Wall clock time and date at job start Tue Mar 31 2020 22:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99991 * 2 1 4 4 C 1.53003 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47086 * 64.99895 * 4 3 2 6 6 C 1.46761 * 124.35189 * 90.00068 * 5 4 3 7 7 C 1.54483 * 105.47573 * 163.00600 * 6 5 4 8 8 H 1.09004 * 110.96135 * 267.25802 * 7 6 5 9 9 C 1.50698 * 110.97202 * 143.53573 * 7 6 5 10 10 O 1.21284 * 119.99784 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99857 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99581 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.50277 * 35.06927 * 12 11 9 14 14 C 1.53045 * 109.52281 * 155.14458 * 12 11 9 15 15 C 1.53035 * 109.54272 * 181.33127 * 14 12 11 16 16 C 1.53194 * 109.31220 * 298.64186 * 15 14 12 17 17 N 1.47199 * 108.85857 * 54.64941 * 16 15 14 18 18 C 1.36935 * 120.81754 * 126.33714 * 17 16 15 19 19 H 1.08007 * 119.99920 * 207.54133 * 18 17 16 20 20 C 1.38804 * 120.00238 * 27.53769 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17 23 23 H 1.48497 * 109.47244 * 60.00150 * 22 20 18 24 24 H 1.48504 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47113 * 300.00082 * 22 20 18 26 26 C 1.46936 * 118.55327 * 306.47807 * 17 16 15 27 27 C 1.54627 * 101.76345 * 25.41464 * 7 6 5 28 28 C 1.34418 * 124.35055 * 270.01916 * 5 4 3 29 29 O 1.21287 * 124.94003 * 0.39420 * 28 5 4 30 30 H 1.08994 * 109.47102 * 300.00286 * 1 2 3 31 31 H 1.09001 * 109.46904 * 60.00536 * 1 2 3 32 32 H 1.09005 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47360 * 59.99626 * 3 2 1 34 34 H 1.09004 * 109.46808 * 299.99745 * 3 2 1 35 35 H 1.08996 * 109.47453 * 304.99598 * 4 3 2 36 36 H 1.08998 * 109.46988 * 184.99329 * 4 3 2 37 37 H 1.08998 * 110.24688 * 43.99937 * 6 5 4 38 38 H 1.09006 * 110.31809 * 282.04149 * 6 5 4 39 39 H 0.96990 * 120.00110 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.46079 * 301.35993 * 14 12 11 41 41 H 1.09002 * 109.45688 * 61.31339 * 14 12 11 42 42 H 1.09007 * 109.49366 * 58.58686 * 15 14 12 43 43 H 1.08993 * 109.50367 * 178.65164 * 15 14 12 44 44 H 1.09001 * 109.58692 * 174.42002 * 16 15 14 45 45 H 1.09002 * 109.58373 * 294.69613 * 16 15 14 46 46 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.58176 * 293.68056 * 26 17 16 48 48 H 1.08992 * 109.58520 * 173.40016 * 26 17 16 49 49 H 1.08997 * 110.48410 * 93.88509 * 27 7 6 50 50 H 1.09006 * 110.48037 * 216.52837 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.3130 1.3075 -2.4705 7 6 5.1176 0.3213 -3.3460 8 1 6.1880 0.4262 -3.1685 9 6 4.7949 0.5091 -4.8060 10 8 3.9932 1.3534 -5.1461 11 7 5.3978 -0.2603 -5.7338 12 6 5.0835 -0.0780 -7.1531 13 1 4.9024 0.9781 -7.3529 14 6 6.2591 -0.5644 -8.0037 15 6 5.9450 -0.3436 -9.4851 16 6 4.7034 -1.1561 -9.8663 17 7 3.6030 -0.7985 -8.9564 18 6 2.3920 -0.3887 -9.4471 19 1 1.7670 0.2697 -8.8620 20 6 1.9678 -0.8194 -10.6966 21 7 2.5375 -1.8628 -11.2615 22 14 0.5882 0.0818 -11.5765 23 1 0.9839 1.4956 -11.7997 24 1 0.3252 -0.5714 -12.8840 25 1 -0.6414 0.0373 -10.7451 26 6 3.8323 -0.8875 -7.5078 27 6 4.6026 -1.0448 -2.8367 28 6 4.1251 -0.7601 -1.4297 29 8 3.9077 -1.6037 -0.5859 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1764 0.0901 37 1 4.9218 2.1779 -2.2258 38 1 3.4048 1.6167 -2.9880 39 1 6.0397 -0.9347 -5.4619 40 1 7.1565 -0.0068 -7.7358 41 1 6.4240 -1.6265 -7.8219 42 1 5.7556 0.7150 -9.6630 43 1 6.7922 -0.6681 -10.0891 44 1 4.4171 -0.9261 -10.8926 45 1 4.9219 -2.2203 -9.7778 46 1 2.2408 -2.1640 -12.1345 47 1 3.9789 -1.9298 -7.2245 48 1 2.9717 -0.4819 -6.9760 49 1 3.7773 -1.3963 -3.4559 50 1 5.4104 -1.7766 -2.8246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007447521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:22 Heat of formation + Delta-G solvation = -90.993345 kcal Electronic energy + Delta-G solvation = -30465.515384 eV Core-core repulsion = 26300.492925 eV Total energy + Delta-G solvation = -4165.022459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93732 -39.41791 -37.97162 -37.44141 -36.20998 -34.38125 -33.58922 -32.38690 -30.48555 -29.77712 -28.50301 -27.81368 -26.49702 -25.30195 -24.14594 -22.91099 -22.15172 -21.66379 -20.09332 -19.63549 -19.25372 -17.64961 -17.08983 -16.81443 -16.73477 -16.07351 -15.74807 -15.65115 -15.23199 -14.96855 -14.73667 -14.66452 -14.10568 -13.74795 -13.63713 -13.53328 -13.44508 -13.25626 -12.98601 -12.83814 -12.43236 -12.42331 -12.23459 -12.05556 -11.88134 -11.66085 -11.52001 -11.39347 -11.10786 -10.91491 -10.79125 -10.29027 -10.26303 -10.13925 -9.92686 -9.91871 -9.81754 -9.66571 -9.51006 -8.89768 -8.87073 -8.41607 -6.68782 -5.78827 -3.20739 2.51856 2.63605 2.72759 3.24814 3.40796 3.45541 3.48317 3.55741 4.06044 4.19032 4.49692 4.59275 4.69045 4.74554 4.81129 4.95537 5.01502 5.05966 5.15885 5.17047 5.25137 5.26049 5.35402 5.37427 5.50350 5.51276 5.51673 5.56401 5.59615 5.68581 5.72932 6.04361 6.12021 6.21017 6.30391 6.49540 6.58316 6.62336 6.65969 6.80714 6.91205 6.95401 6.97993 7.33964 7.63517 7.64148 7.81966 8.08917 8.31159 8.45301 9.21151 9.83665 10.39445 11.30091 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002692 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.416815 B =10398.768732 C =11715.202111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.039 3.961 4 C 0.131 3.869 5 N -0.619 5.619 6 C 0.117 3.883 7 C -0.123 4.123 8 H 0.115 0.885 9 C 0.522 3.478 10 O -0.531 6.531 11 N -0.717 5.717 12 C 0.125 3.875 13 H 0.087 0.913 14 C -0.115 4.115 15 C -0.139 4.139 16 C 0.166 3.834 17 N -0.587 5.587 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.142 3.858 27 C -0.145 4.145 28 C 0.526 3.474 29 O -0.517 6.517 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.396 0.604 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.017 0.983 48 H 0.057 0.943 49 H 0.111 0.889 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 6.319 20.253 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.039 4.039 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.006 4.006 7 C -0.145 4.145 8 H 0.133 0.867 9 C 0.306 3.694 10 O -0.407 6.407 11 N -0.367 5.367 12 C 0.020 3.980 13 H 0.105 0.895 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.040 3.960 17 N -0.310 5.310 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.014 3.986 27 C -0.185 4.185 28 C 0.313 3.687 29 O -0.392 6.392 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.230 0.770 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.075 0.925 49 H 0.129 0.871 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.990 6.260 20.336 22.397 hybrid contribution -0.615 0.401 -0.449 0.861 sum 6.375 6.661 19.887 21.921 Atomic orbital electron populations 1.22739 0.81224 1.02868 0.99679 1.88052 1.19399 1.26683 1.95292 1.23024 0.94446 0.85874 1.00602 1.21400 0.92300 0.99145 0.86303 1.48182 1.67454 1.07371 1.12425 1.21978 1.00689 0.93922 0.84041 1.22234 1.02433 0.96610 0.93249 0.86690 1.19978 0.81137 0.81465 0.86832 1.90750 1.33788 1.34433 1.81711 1.46108 1.44811 1.38251 1.07553 1.21785 0.96959 1.02086 0.77195 0.89525 1.21675 0.96225 1.00605 0.96770 1.22172 1.00221 1.01825 0.93706 1.20893 0.84217 0.94340 0.96517 1.44041 1.10305 1.78127 0.98551 1.19171 0.95416 1.22040 1.01462 0.91601 1.25011 0.98464 0.96307 0.99781 1.70024 1.44361 1.23355 1.17118 0.86352 0.81980 0.79460 0.78909 1.20969 1.21633 1.20856 1.21171 0.94545 0.95702 0.87141 1.22351 1.04005 0.96966 0.95216 1.20631 0.76624 0.82151 0.89295 1.90736 1.50843 1.49046 1.48560 0.94325 0.94094 0.89626 0.92426 0.92850 0.89118 0.88728 0.89916 0.89005 0.77041 0.93077 0.92186 0.92430 0.92675 0.89243 0.96248 0.93587 0.96475 0.92486 0.87083 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.63 10.22 -35.23 -0.36 -4.99 16 3 C 0.04 0.34 6.28 37.16 0.23 0.58 16 4 C 0.13 1.08 6.33 -4.04 -0.03 1.06 16 5 N -0.62 -6.31 2.90 -172.41 -0.50 -6.81 16 6 C 0.12 1.07 6.71 -3.12 -0.02 1.05 16 7 C -0.12 -1.11 3.54 -90.14 -0.32 -1.43 16 8 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 9 C 0.52 6.75 7.02 -10.99 -0.08 6.67 16 10 O -0.53 -9.21 15.17 5.55 0.08 -9.13 16 11 N -0.72 -8.98 5.08 -53.69 -0.27 -9.25 16 12 C 0.12 2.09 2.60 -67.81 -0.18 1.91 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 14 C -0.11 -1.73 5.36 -26.69 -0.14 -1.87 16 15 C -0.14 -2.51 6.08 -26.61 -0.16 -2.67 16 16 C 0.17 3.84 5.33 -3.56 -0.02 3.82 16 17 N -0.59 -14.68 3.01 -172.10 -0.52 -15.20 16 18 C -0.25 -7.01 9.59 -15.06 -0.14 -7.15 16 19 H 0.07 1.85 7.89 -52.48 -0.41 1.43 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.14 11.18 55.49 0.62 -25.52 16 22 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.14 2.99 6.08 -3.71 -0.02 2.97 16 27 C -0.14 -1.43 6.41 -26.74 -0.17 -1.60 16 28 C 0.53 6.60 7.72 -10.86 -0.08 6.52 16 29 O -0.52 -8.48 17.45 5.55 0.10 -8.39 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.84 7.93 -51.93 -0.41 0.42 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.04 6.96 -51.93 -0.36 0.68 16 39 H 0.40 3.67 8.60 -40.82 -0.35 3.31 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 49 H 0.11 1.25 7.89 -51.93 -0.41 0.84 16 50 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -35.59 402.16 -8.47 -44.05 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.54 Total: 1.01 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.11 Total: 11.26 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.67 Total: -56.78 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.18 Total: -22.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.59 -8.47 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007447521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.940 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds