Wall clock time and date at job start Tue Mar 31 2020 22:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99991 * 2 1 4 4 C 1.53003 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47086 * 64.99895 * 4 3 2 6 6 C 1.46761 * 124.35189 * 90.00068 * 5 4 3 7 7 C 1.54483 * 105.47573 * 163.00600 * 6 5 4 8 8 H 1.09004 * 110.96135 * 267.25802 * 7 6 5 9 9 C 1.50698 * 110.97202 * 143.53573 * 7 6 5 10 10 O 1.21284 * 119.99784 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99857 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99581 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.50277 * 35.06927 * 12 11 9 14 14 C 1.53045 * 109.52281 * 155.14458 * 12 11 9 15 15 C 1.53035 * 109.54272 * 181.33127 * 14 12 11 16 16 C 1.53194 * 109.31220 * 298.64186 * 15 14 12 17 17 N 1.47199 * 108.85857 * 54.64941 * 16 15 14 18 18 C 1.36935 * 120.81754 * 126.33714 * 17 16 15 19 19 H 1.08007 * 119.99920 * 207.54133 * 18 17 16 20 20 C 1.38804 * 120.00238 * 27.53769 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17 23 23 H 1.48497 * 109.47244 * 60.00150 * 22 20 18 24 24 H 1.48504 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47113 * 300.00082 * 22 20 18 26 26 C 1.46936 * 118.55327 * 306.47807 * 17 16 15 27 27 C 1.54627 * 101.76345 * 25.41464 * 7 6 5 28 28 C 1.34418 * 124.35055 * 270.01916 * 5 4 3 29 29 O 1.21287 * 124.94003 * 0.39420 * 28 5 4 30 30 H 1.08994 * 109.47102 * 300.00286 * 1 2 3 31 31 H 1.09001 * 109.46904 * 60.00536 * 1 2 3 32 32 H 1.09005 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47360 * 59.99626 * 3 2 1 34 34 H 1.09004 * 109.46808 * 299.99745 * 3 2 1 35 35 H 1.08996 * 109.47453 * 304.99598 * 4 3 2 36 36 H 1.08998 * 109.46988 * 184.99329 * 4 3 2 37 37 H 1.08998 * 110.24688 * 43.99937 * 6 5 4 38 38 H 1.09006 * 110.31809 * 282.04149 * 6 5 4 39 39 H 0.96990 * 120.00110 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.46079 * 301.35993 * 14 12 11 41 41 H 1.09002 * 109.45688 * 61.31339 * 14 12 11 42 42 H 1.09007 * 109.49366 * 58.58686 * 15 14 12 43 43 H 1.08993 * 109.50367 * 178.65164 * 15 14 12 44 44 H 1.09001 * 109.58692 * 174.42002 * 16 15 14 45 45 H 1.09002 * 109.58373 * 294.69613 * 16 15 14 46 46 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.58176 * 293.68056 * 26 17 16 48 48 H 1.08992 * 109.58520 * 173.40016 * 26 17 16 49 49 H 1.08997 * 110.48410 * 93.88509 * 27 7 6 50 50 H 1.09006 * 110.48037 * 216.52837 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.3130 1.3075 -2.4705 7 6 5.1176 0.3213 -3.3460 8 1 6.1880 0.4262 -3.1685 9 6 4.7949 0.5091 -4.8060 10 8 3.9932 1.3534 -5.1461 11 7 5.3978 -0.2603 -5.7338 12 6 5.0835 -0.0780 -7.1531 13 1 4.9024 0.9781 -7.3529 14 6 6.2591 -0.5644 -8.0037 15 6 5.9450 -0.3436 -9.4851 16 6 4.7034 -1.1561 -9.8663 17 7 3.6030 -0.7985 -8.9564 18 6 2.3920 -0.3887 -9.4471 19 1 1.7670 0.2697 -8.8620 20 6 1.9678 -0.8194 -10.6966 21 7 2.5375 -1.8628 -11.2615 22 14 0.5882 0.0818 -11.5765 23 1 0.9839 1.4956 -11.7997 24 1 0.3252 -0.5714 -12.8840 25 1 -0.6414 0.0373 -10.7451 26 6 3.8323 -0.8875 -7.5078 27 6 4.6026 -1.0448 -2.8367 28 6 4.1251 -0.7601 -1.4297 29 8 3.9077 -1.6037 -0.5859 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1764 0.0901 37 1 4.9218 2.1779 -2.2258 38 1 3.4048 1.6167 -2.9880 39 1 6.0397 -0.9347 -5.4619 40 1 7.1565 -0.0068 -7.7358 41 1 6.4240 -1.6265 -7.8219 42 1 5.7556 0.7150 -9.6630 43 1 6.7922 -0.6681 -10.0891 44 1 4.4171 -0.9261 -10.8926 45 1 4.9219 -2.2203 -9.7778 46 1 2.2408 -2.1640 -12.1345 47 1 3.9789 -1.9298 -7.2245 48 1 2.9717 -0.4819 -6.9760 49 1 3.7773 -1.3963 -3.4559 50 1 5.4104 -1.7766 -2.8246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007447521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:21 Heat of formation + Delta-G solvation = -117.366379 kcal Electronic energy + Delta-G solvation = -30466.659005 eV Core-core repulsion = 26300.492925 eV Total energy + Delta-G solvation = -4166.166079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86207 -40.54818 -38.97768 -38.75347 -37.22257 -35.90711 -34.52129 -33.92573 -32.32780 -30.82288 -29.73595 -28.67036 -27.27568 -27.23489 -25.12440 -23.87118 -23.77571 -22.99926 -21.28952 -20.83074 -20.36232 -18.74541 -18.57131 -17.90388 -17.57462 -17.11858 -16.93799 -16.68204 -16.50461 -16.15656 -15.94787 -15.76857 -15.58624 -15.24964 -14.87320 -14.79105 -14.54059 -14.26503 -14.15687 -14.00325 -13.88036 -13.63018 -13.37484 -13.02702 -12.98367 -12.76004 -12.73009 -12.56236 -12.41845 -12.35291 -12.14062 -12.12357 -11.96237 -11.72613 -11.54343 -11.28591 -11.07967 -10.71139 -10.62042 -10.60972 -10.08259 -9.71345 -8.69282 -7.90824 -5.35686 1.44095 1.45981 1.53406 1.56544 1.62519 1.89721 2.23886 2.50555 2.87589 3.22403 3.23725 3.39189 3.68381 3.82561 3.93222 3.94758 4.06684 4.13393 4.15274 4.22092 4.29943 4.35014 4.43481 4.45159 4.50265 4.50993 4.56594 4.60116 4.66691 4.76755 4.79112 4.84144 4.86275 4.93144 4.98300 5.05854 5.15726 5.20213 5.30988 5.49462 5.55466 5.59547 5.63496 5.78130 6.09208 6.23802 6.36252 6.62685 7.12410 7.18109 7.32036 7.82827 8.32491 9.14788 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002692 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.416815 B =10398.768732 C =11715.202111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.033 3.967 4 C 0.125 3.875 5 N -0.614 5.614 6 C 0.116 3.884 7 C -0.104 4.104 8 H 0.161 0.839 9 C 0.522 3.478 10 O -0.578 6.578 11 N -0.703 5.703 12 C 0.143 3.857 13 H 0.060 0.940 14 C -0.104 4.104 15 C -0.130 4.130 16 C 0.169 3.831 17 N -0.608 5.608 18 C -0.268 4.268 19 H 0.054 0.946 20 C -0.044 4.044 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.140 4.140 28 C 0.516 3.484 29 O -0.564 6.564 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.418 0.582 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.004 0.996 46 H 0.252 0.748 47 H 0.019 0.981 48 H 0.028 0.972 49 H 0.092 0.908 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 7.551 21.550 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.044 4.044 4 C 0.003 3.997 5 N -0.347 5.347 6 C -0.007 4.007 7 C -0.126 4.126 8 H 0.178 0.822 9 C 0.308 3.692 10 O -0.457 6.457 11 N -0.355 5.355 12 C 0.036 3.964 13 H 0.079 0.921 14 C -0.142 4.142 15 C -0.169 4.169 16 C 0.044 3.956 17 N -0.332 5.332 18 C -0.398 4.398 19 H 0.071 0.929 20 C -0.240 4.240 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.181 4.181 28 C 0.304 3.696 29 O -0.443 6.443 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.255 0.745 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.022 0.978 46 H 0.061 0.939 47 H 0.037 0.963 48 H 0.046 0.954 49 H 0.111 0.889 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.439 7.510 21.666 24.797 hybrid contribution -1.438 0.028 -0.806 1.649 sum 8.001 7.537 20.860 23.579 Atomic orbital electron populations 1.22822 0.80294 1.03037 1.00615 1.88010 1.20732 1.28880 1.95527 1.23219 0.94782 0.84815 1.01617 1.21678 0.92098 1.00809 0.85091 1.48314 1.66276 1.06871 1.13245 1.22050 1.00244 0.94933 0.83425 1.22211 1.04888 0.95754 0.89724 0.82158 1.20641 0.79853 0.80330 0.88356 1.90747 1.35731 1.36534 1.82709 1.45855 1.45095 1.38804 1.05727 1.21224 0.95704 0.99507 0.79978 0.92133 1.21609 0.96524 1.02154 0.93923 1.22005 0.98337 1.00098 0.96499 1.20778 0.85930 0.94326 0.94550 1.44276 1.10098 1.78423 1.00378 1.19364 0.96624 1.21902 1.01925 0.92861 1.25706 1.00922 0.97048 1.00337 1.70158 1.45709 1.24502 1.17167 0.85396 0.79343 0.78399 0.77659 1.20401 1.21335 1.20546 1.21232 0.95894 0.96307 0.84898 1.22342 1.04286 0.98169 0.93261 1.21062 0.76224 0.82561 0.89725 1.90707 1.53116 1.50376 1.50107 0.92253 0.94207 0.89979 0.89901 0.93199 0.90179 0.84725 0.86481 0.91577 0.74475 0.89065 0.90648 0.93377 0.89807 0.92858 0.97773 0.93881 0.96289 0.95355 0.88930 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -10.24 10.22 -148.98 -1.52 -11.76 16 3 C 0.03 0.55 6.28 71.98 0.45 1.01 16 4 C 0.12 1.83 6.33 86.38 0.55 2.38 16 5 N -0.61 -11.46 2.90 -817.98 -2.37 -13.83 16 6 C 0.12 1.85 6.71 86.83 0.58 2.43 16 7 C -0.10 -1.54 3.54 -10.48 -0.04 -1.58 16 8 H 0.16 1.05 8.14 -2.38 -0.02 1.03 16 9 C 0.52 12.53 7.02 87.66 0.62 13.14 16 10 O -0.58 -19.98 15.17 -3.04 -0.05 -20.02 16 11 N -0.70 -15.80 5.08 -442.16 -2.25 -18.05 16 12 C 0.14 4.58 2.60 45.07 0.12 4.70 16 13 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 14 C -0.10 -2.80 5.36 30.62 0.16 -2.64 16 15 C -0.13 -4.45 6.08 30.67 0.19 -4.26 16 16 C 0.17 7.96 5.33 86.31 0.46 8.42 16 17 N -0.61 -31.25 3.01 -698.39 -2.10 -33.35 16 18 C -0.27 -15.48 9.59 84.03 0.81 -14.67 16 19 H 0.05 3.13 7.89 -2.91 -0.02 3.11 16 20 C -0.04 -2.54 4.92 84.86 0.42 -2.12 16 21 N -0.93 -55.29 11.18 21.65 0.24 -55.05 16 22 Si 0.96 46.11 29.59 68.60 2.03 48.14 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.14 6.15 6.08 86.36 0.53 6.68 16 27 C -0.14 -2.50 6.41 30.59 0.20 -2.30 16 28 C 0.52 12.49 7.72 87.90 0.68 13.17 16 29 O -0.56 -18.64 17.45 -3.05 -0.05 -18.70 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.39 7.93 -2.39 -0.02 1.37 16 36 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.46 6.96 -2.38 -0.02 1.44 16 39 H 0.42 5.98 8.60 -92.72 -0.80 5.18 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 45 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 46 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16 49 H 0.09 2.04 7.89 -2.39 -0.02 2.02 16 50 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -83.52 402.16 1.02 -82.49 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.13 Total: 13.99 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.96 Total: 26.14 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.48 Total: -120.28 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -1.62 Total: -50.48 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -83.52 1.02 -82.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007447521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.875 kcal (2) G-P(sol) polarization free energy of solvation -83.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds