Wall clock time and date at job start Tue Mar 31 2020 22:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00215 * 2 1 4 4 H 1.09002 * 109.47153 * 341.42802 * 3 2 1 5 5 C 1.50699 * 109.47516 * 221.42117 * 3 2 1 6 6 O 1.21280 * 120.00163 * 355.00632 * 5 3 2 7 7 N 1.34775 * 119.99860 * 174.99807 * 5 3 2 8 8 C 1.46502 * 120.00098 * 180.02562 * 7 5 3 9 9 H 1.08997 * 109.53534 * 324.90846 * 8 7 5 10 10 C 1.53117 * 109.49969 * 85.00426 * 8 7 5 11 11 C 1.53123 * 109.16071 * 177.60011 * 10 8 7 12 12 C 1.53047 * 109.27477 * 302.34258 * 11 10 8 13 13 N 1.46843 * 109.52038 * 59.18119 * 12 11 10 14 14 C 1.46901 * 110.99947 * 174.16036 * 13 12 11 15 15 C 1.50702 * 109.47080 * 190.73087 * 14 13 12 16 16 O 1.21289 * 120.00353 * 5.96194 * 15 14 13 17 17 N 1.34780 * 119.99964 * 185.96007 * 15 14 13 18 18 C 1.37094 * 119.99831 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00658 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99428 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00612 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99665 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47443 * 90.00268 * 22 20 18 24 24 H 1.48501 * 109.47070 * 209.99922 * 22 20 18 25 25 H 1.48500 * 109.47377 * 330.00079 * 22 20 18 26 26 C 1.46850 * 111.20038 * 298.25726 * 13 12 11 27 27 C 1.53004 * 109.46592 * 101.42400 * 3 2 1 28 28 C 1.53002 * 117.50149 * 4.86848 * 27 3 2 29 29 C 1.53000 * 117.49973 * 296.24288 * 27 3 2 30 30 H 1.09009 * 109.46951 * 62.97657 * 1 2 3 31 31 H 1.09003 * 109.47196 * 182.97015 * 1 2 3 32 32 H 1.08995 * 109.47302 * 302.97842 * 1 2 3 33 33 H 0.97001 * 120.00294 * 0.02562 * 7 5 3 34 34 H 1.09004 * 109.52451 * 57.69336 * 10 8 7 35 35 H 1.09004 * 109.52628 * 297.49968 * 10 8 7 36 36 H 1.09000 * 109.50468 * 62.28261 * 11 10 8 37 37 H 1.08997 * 109.50428 * 182.40603 * 11 10 8 38 38 H 1.09000 * 109.46001 * 179.19556 * 12 11 10 39 39 H 1.08998 * 109.46087 * 299.16686 * 12 11 10 40 40 H 1.09003 * 109.46660 * 310.72827 * 14 13 12 41 41 H 1.08994 * 109.47213 * 70.73172 * 14 13 12 42 42 H 0.97000 * 119.99563 * 359.97438 * 17 15 14 43 43 H 0.96998 * 120.00687 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.46108 * 301.72561 * 26 13 12 45 45 H 1.09001 * 109.45663 * 181.75806 * 26 13 12 46 46 H 1.08995 * 115.54779 * 150.57923 * 27 3 2 47 47 H 1.08996 * 117.49614 * 359.97438 * 28 27 3 48 48 H 1.09000 * 117.49748 * 145.02126 * 28 27 3 49 49 H 1.09000 * 117.50068 * 214.97733 * 29 27 3 50 50 H 1.09002 * 117.49729 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2681 2.0336 -0.3273 5 6 3.1879 1.3310 -0.9400 6 8 3.5547 0.3092 -1.4804 7 7 3.8333 2.4896 -1.1801 8 6 4.9778 2.5146 -2.0943 9 1 5.5406 1.5860 -1.9993 10 6 4.4787 2.6649 -3.5340 11 6 5.6823 2.7505 -4.4768 12 6 6.5673 3.9277 -4.0606 13 7 7.0195 3.7365 -2.6767 14 6 7.9823 4.7760 -2.2890 15 6 8.6195 4.4055 -0.9746 16 8 8.3848 3.3282 -0.4691 17 7 9.4502 5.2713 -0.3606 18 6 10.0303 4.9339 0.8349 19 1 9.8220 3.9744 1.2845 20 6 10.8872 5.8263 1.4675 21 7 11.1419 6.9933 0.9197 22 14 11.6770 5.3671 3.0968 23 1 12.9729 4.6872 2.8445 24 1 11.9105 6.5958 3.8974 25 1 10.7758 4.4533 3.8437 26 6 5.8832 3.6985 -1.7472 27 6 2.4787 1.6550 1.4140 28 6 2.3611 0.5695 2.4858 29 6 1.4111 1.7687 2.5040 30 1 -0.3633 0.4670 -0.9156 31 1 -0.3634 -1.0263 0.0533 32 1 -0.3633 0.5593 0.8620 33 1 3.5401 3.3068 -0.7476 34 1 3.8832 3.5738 -3.6202 35 1 3.8684 1.8018 -3.8001 36 1 6.2561 1.8256 -4.4193 37 1 5.3341 2.9005 -5.4987 38 1 7.4326 3.9828 -4.7212 39 1 5.9968 4.8538 -4.1316 40 1 8.7529 4.8613 -3.0552 41 1 7.4652 5.7299 -2.1860 42 1 9.6382 6.1326 -0.7651 43 1 11.7398 7.6164 1.3614 44 1 5.3160 4.6258 -1.8290 45 1 6.2519 3.5872 -0.7275 46 1 3.3320 2.3305 1.4729 47 1 1.9496 -0.3935 2.1837 48 1 3.1372 0.5307 3.2501 49 1 1.5623 2.5188 3.2803 50 1 0.3749 1.5950 2.2137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317968708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:58 Heat of formation + Delta-G solvation = -82.734034 kcal Electronic energy + Delta-G solvation = -30307.199841 eV Core-core repulsion = 26142.535533 eV Total energy + Delta-G solvation = -4164.664308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44585 -39.29997 -38.26143 -37.38681 -36.08967 -34.67747 -33.90758 -32.57545 -31.21635 -30.38486 -28.57404 -27.45608 -26.28651 -24.69914 -22.93719 -22.88653 -22.54828 -21.45696 -20.32755 -19.85024 -19.15963 -17.86494 -17.76620 -17.00328 -16.62254 -16.01674 -15.81571 -15.44418 -15.02920 -14.82982 -14.63470 -14.53240 -14.38856 -14.07272 -13.91057 -13.54270 -13.40003 -13.36675 -13.09205 -13.02276 -12.48998 -12.27537 -11.97562 -11.68024 -11.66153 -11.53009 -11.47279 -11.28957 -11.06749 -10.89169 -10.78644 -10.64019 -10.54007 -10.46982 -10.39789 -10.21862 -10.16299 -9.48283 -9.43631 -9.02810 -8.44739 -7.98158 -7.88763 -6.42159 -3.82804 2.51607 2.74907 3.17544 3.26280 3.31913 3.51336 3.74160 3.90509 4.01540 4.24146 4.35865 4.47262 4.58479 4.79480 4.85977 4.89488 4.94657 4.95001 4.99701 5.05836 5.07436 5.22171 5.24039 5.28279 5.30357 5.40373 5.47762 5.61860 5.62513 5.70705 5.72085 5.79424 5.84425 5.85414 5.97831 6.02211 6.09931 6.14145 6.25284 6.29942 6.41860 6.46735 6.73385 7.22788 7.36232 7.47853 7.54979 8.06247 8.21800 8.61762 9.18156 9.54334 10.06369 10.75616 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.002903 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.939714 B = 9644.421637 C =11931.878787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.352 6.352 3 C 0.104 3.896 4 H 0.090 0.910 5 C 0.517 3.483 6 O -0.516 6.516 7 N -0.721 5.721 8 C 0.152 3.848 9 H 0.100 0.900 10 C -0.129 4.129 11 C -0.112 4.112 12 C 0.053 3.947 13 N -0.511 5.511 14 C 0.048 3.952 15 C 0.442 3.558 16 O -0.574 6.574 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.052 3.948 27 C -0.181 4.181 28 C -0.157 4.157 29 C -0.177 4.177 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.398 0.602 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.026 0.974 45 H 0.103 0.897 46 H 0.119 0.881 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.187 -3.699 -5.158 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.269 6.269 3 C 0.043 3.957 4 H 0.107 0.893 5 C 0.301 3.699 6 O -0.390 6.390 7 N -0.374 5.374 8 C 0.048 3.952 9 H 0.118 0.882 10 C -0.168 4.168 11 C -0.151 4.151 12 C -0.075 4.075 13 N -0.236 5.236 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.458 6.458 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.077 4.077 27 C -0.200 4.200 28 C -0.194 4.194 29 C -0.214 4.214 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.231 0.769 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.121 0.879 46 H 0.137 0.863 47 H 0.125 0.875 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.606 -5.668 -5.113 21.974 hybrid contribution -0.105 1.998 0.704 2.121 sum -20.711 -3.669 -4.409 21.491 Atomic orbital electron populations 1.22996 0.80929 1.03287 1.00030 1.88065 1.19382 1.24975 1.94508 1.21376 0.94393 0.86809 0.93151 0.89260 1.20317 0.84061 0.83648 0.81870 1.90725 1.65549 1.32676 1.50055 1.45917 1.33017 1.10427 1.48058 1.20940 0.85523 1.01167 0.87577 0.88169 1.21978 0.98082 1.01740 0.94978 1.21519 0.95935 0.99543 0.98057 1.22171 0.98559 0.96698 0.90091 1.61331 1.13642 1.47517 1.01067 1.21856 0.95819 0.92455 0.98201 1.19766 0.84250 0.86310 0.86986 1.90525 1.64703 1.23486 1.67075 1.41882 1.40613 1.17011 1.20711 1.19690 1.23065 1.03107 0.96852 0.87933 1.25247 0.97587 0.95204 0.99897 1.69606 1.37137 1.07672 1.39997 0.85876 0.79474 0.77803 0.81255 1.20386 1.20971 1.19429 1.22329 0.90749 0.94959 0.99613 1.22728 1.02497 1.05090 0.89689 1.22926 1.02047 0.94553 0.99866 1.23060 0.95479 1.01935 1.00941 0.93861 0.89118 0.93677 0.76851 0.92338 0.91495 0.90607 0.91348 0.90500 0.95173 0.89022 0.93529 0.77536 0.91901 0.95540 0.87880 0.86269 0.87520 0.88511 0.88337 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.69 101.05 1.08 1.26 16 2 O -0.35 -4.15 8.24 -55.09 -0.45 -4.60 16 3 C 0.10 1.11 2.94 -27.88 -0.08 1.03 16 4 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 5 C 0.52 7.17 7.12 -10.99 -0.08 7.09 16 6 O -0.52 -9.50 16.17 -14.30 -0.23 -9.73 16 7 N -0.72 -8.78 4.96 -53.73 -0.27 -9.05 16 8 C 0.15 2.18 2.61 -67.85 -0.18 2.00 16 9 H 0.10 1.81 7.58 -51.93 -0.39 1.41 16 10 C -0.13 -1.56 5.58 -26.61 -0.15 -1.71 16 11 C -0.11 -1.31 6.09 -26.64 -0.16 -1.47 16 12 C 0.05 0.66 5.46 -3.83 -0.02 0.64 16 13 N -0.51 -8.34 4.35 -236.11 -1.03 -9.37 16 14 C 0.05 0.83 5.45 -4.97 -0.03 0.81 16 15 C 0.44 10.23 7.32 -10.98 -0.08 10.15 16 16 O -0.57 -15.32 14.28 5.55 0.08 -15.24 16 17 N -0.57 -14.10 5.29 -10.96 -0.06 -14.15 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.05 0.81 4.59 -3.83 -0.02 0.79 16 27 C -0.18 -1.80 5.69 -90.62 -0.52 -2.32 16 28 C -0.16 -1.57 9.87 -26.73 -0.26 -1.83 16 29 C -0.18 -1.40 10.12 -26.73 -0.27 -1.67 16 30 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.26 6.06 -51.93 -0.31 -0.05 16 33 H 0.40 3.72 8.60 -40.82 -0.35 3.37 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 1.44 7.97 -51.93 -0.41 1.03 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 1.97 6.06 -51.93 -0.31 1.66 16 46 H 0.12 1.23 8.00 -51.93 -0.42 0.81 16 47 H 0.11 1.12 7.03 -51.93 -0.37 0.76 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 0.62 6.13 -51.93 -0.32 0.30 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -34.16 401.95 -9.39 -43.55 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -8.18 Total: 13.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.00 Total: 6.90 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.63 Total: -56.20 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.61 Total: -29.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.16 -9.39 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317968708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.185 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds