Wall clock time and date at job start Tue Mar 31 2020 22:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00215 * 2 1 4 4 H 1.09002 * 109.47153 * 341.42802 * 3 2 1 5 5 C 1.50699 * 109.47516 * 221.42117 * 3 2 1 6 6 O 1.21280 * 120.00163 * 355.00632 * 5 3 2 7 7 N 1.34775 * 119.99860 * 174.99807 * 5 3 2 8 8 C 1.46502 * 120.00098 * 180.02562 * 7 5 3 9 9 H 1.08997 * 109.53534 * 324.90846 * 8 7 5 10 10 C 1.53117 * 109.49969 * 85.00426 * 8 7 5 11 11 C 1.53123 * 109.16071 * 177.60011 * 10 8 7 12 12 C 1.53047 * 109.27477 * 302.34258 * 11 10 8 13 13 N 1.46843 * 109.52038 * 59.18119 * 12 11 10 14 14 C 1.46901 * 110.99947 * 174.16036 * 13 12 11 15 15 C 1.50702 * 109.47080 * 190.73087 * 14 13 12 16 16 O 1.21289 * 120.00353 * 5.96194 * 15 14 13 17 17 N 1.34780 * 119.99964 * 185.96007 * 15 14 13 18 18 C 1.37094 * 119.99831 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00658 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99428 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00612 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99665 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47443 * 90.00268 * 22 20 18 24 24 H 1.48501 * 109.47070 * 209.99922 * 22 20 18 25 25 H 1.48500 * 109.47377 * 330.00079 * 22 20 18 26 26 C 1.46850 * 111.20038 * 298.25726 * 13 12 11 27 27 C 1.53004 * 109.46592 * 101.42400 * 3 2 1 28 28 C 1.53002 * 117.50149 * 4.86848 * 27 3 2 29 29 C 1.53000 * 117.49973 * 296.24288 * 27 3 2 30 30 H 1.09009 * 109.46951 * 62.97657 * 1 2 3 31 31 H 1.09003 * 109.47196 * 182.97015 * 1 2 3 32 32 H 1.08995 * 109.47302 * 302.97842 * 1 2 3 33 33 H 0.97001 * 120.00294 * 0.02562 * 7 5 3 34 34 H 1.09004 * 109.52451 * 57.69336 * 10 8 7 35 35 H 1.09004 * 109.52628 * 297.49968 * 10 8 7 36 36 H 1.09000 * 109.50468 * 62.28261 * 11 10 8 37 37 H 1.08997 * 109.50428 * 182.40603 * 11 10 8 38 38 H 1.09000 * 109.46001 * 179.19556 * 12 11 10 39 39 H 1.08998 * 109.46087 * 299.16686 * 12 11 10 40 40 H 1.09003 * 109.46660 * 310.72827 * 14 13 12 41 41 H 1.08994 * 109.47213 * 70.73172 * 14 13 12 42 42 H 0.97000 * 119.99563 * 359.97438 * 17 15 14 43 43 H 0.96998 * 120.00687 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.46108 * 301.72561 * 26 13 12 45 45 H 1.09001 * 109.45663 * 181.75806 * 26 13 12 46 46 H 1.08995 * 115.54779 * 150.57923 * 27 3 2 47 47 H 1.08996 * 117.49614 * 359.97438 * 28 27 3 48 48 H 1.09000 * 117.49748 * 145.02126 * 28 27 3 49 49 H 1.09000 * 117.50068 * 214.97733 * 29 27 3 50 50 H 1.09002 * 117.49729 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2681 2.0336 -0.3273 5 6 3.1879 1.3310 -0.9400 6 8 3.5547 0.3092 -1.4804 7 7 3.8333 2.4896 -1.1801 8 6 4.9778 2.5146 -2.0943 9 1 5.5406 1.5860 -1.9993 10 6 4.4787 2.6649 -3.5340 11 6 5.6823 2.7505 -4.4768 12 6 6.5673 3.9277 -4.0606 13 7 7.0195 3.7365 -2.6767 14 6 7.9823 4.7760 -2.2890 15 6 8.6195 4.4055 -0.9746 16 8 8.3848 3.3282 -0.4691 17 7 9.4502 5.2713 -0.3606 18 6 10.0303 4.9339 0.8349 19 1 9.8220 3.9744 1.2845 20 6 10.8872 5.8263 1.4675 21 7 11.1419 6.9933 0.9197 22 14 11.6770 5.3671 3.0968 23 1 12.9729 4.6872 2.8445 24 1 11.9105 6.5958 3.8974 25 1 10.7758 4.4533 3.8437 26 6 5.8832 3.6985 -1.7472 27 6 2.4787 1.6550 1.4140 28 6 2.3611 0.5695 2.4858 29 6 1.4111 1.7687 2.5040 30 1 -0.3633 0.4670 -0.9156 31 1 -0.3634 -1.0263 0.0533 32 1 -0.3633 0.5593 0.8620 33 1 3.5401 3.3068 -0.7476 34 1 3.8832 3.5738 -3.6202 35 1 3.8684 1.8018 -3.8001 36 1 6.2561 1.8256 -4.4193 37 1 5.3341 2.9005 -5.4987 38 1 7.4326 3.9828 -4.7212 39 1 5.9968 4.8538 -4.1316 40 1 8.7529 4.8613 -3.0552 41 1 7.4652 5.7299 -2.1860 42 1 9.6382 6.1326 -0.7651 43 1 11.7398 7.6164 1.3614 44 1 5.3160 4.6258 -1.8290 45 1 6.2519 3.5872 -0.7275 46 1 3.3320 2.3305 1.4729 47 1 1.9496 -0.3935 2.1837 48 1 3.1372 0.5307 3.2501 49 1 1.5623 2.5188 3.2803 50 1 0.3749 1.5950 2.2137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317968708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:57 Heat of formation + Delta-G solvation = -108.161476 kcal Electronic energy + Delta-G solvation = -30308.302458 eV Core-core repulsion = 26142.535533 eV Total energy + Delta-G solvation = -4165.766925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49037 -40.58487 -39.56098 -38.72600 -36.85220 -36.07415 -35.69373 -33.77040 -33.21332 -31.40554 -29.49865 -28.90317 -26.97639 -26.50881 -24.22158 -23.95548 -23.24863 -22.39546 -21.36603 -21.04028 -20.79377 -19.85872 -18.73458 -17.91239 -17.73167 -17.45937 -16.88680 -16.55778 -16.50357 -16.24571 -15.82400 -15.72637 -15.61111 -15.40985 -15.17233 -14.81641 -14.59225 -14.40137 -14.28865 -13.97700 -13.78774 -13.54965 -13.26021 -13.06742 -12.97437 -12.72547 -12.42488 -12.41605 -12.37102 -12.30605 -12.13137 -11.93679 -11.79837 -11.72484 -11.52736 -11.44038 -11.29576 -10.91211 -10.40051 -10.30735 -10.11348 -9.98049 -9.18833 -8.46045 -5.94082 1.37096 1.41041 1.46290 1.53162 1.78711 2.07497 2.28529 2.67683 2.86596 3.02720 3.21177 3.39842 3.52967 3.64022 3.79663 3.82932 3.88481 4.04298 4.10103 4.15062 4.16508 4.27328 4.31993 4.34630 4.45303 4.47957 4.55262 4.56773 4.63775 4.69079 4.72954 4.75925 4.85956 4.93437 4.97668 4.99109 5.05825 5.17234 5.20875 5.26802 5.33009 5.41215 5.42472 5.89520 6.01566 6.08350 6.24164 6.50056 6.62622 7.14771 7.18045 7.58629 8.15389 8.71338 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.002903 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.939714 B = 9644.421637 C =11931.878787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.384 6.384 3 C 0.113 3.887 4 H 0.125 0.875 5 C 0.510 3.490 6 O -0.571 6.571 7 N -0.709 5.709 8 C 0.158 3.842 9 H 0.051 0.949 10 C -0.119 4.119 11 C -0.109 4.109 12 C 0.054 3.946 13 N -0.538 5.538 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.616 6.616 17 N -0.574 5.574 18 C -0.330 4.330 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.061 3.939 27 C -0.194 4.194 28 C -0.178 4.178 29 C -0.145 4.145 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.110 0.890 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.064 -1.616 -5.835 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.302 6.302 3 C 0.051 3.949 4 H 0.143 0.857 5 C 0.297 3.703 6 O -0.449 6.449 7 N -0.362 5.362 8 C 0.053 3.947 9 H 0.069 0.931 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.073 4.073 13 N -0.264 5.264 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.502 6.502 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.093 0.907 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.068 4.068 27 C -0.213 4.213 28 C -0.215 4.215 29 C -0.182 4.182 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.128 0.872 47 H 0.117 0.883 48 H 0.108 0.892 49 H 0.129 0.871 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.502 -3.529 -5.801 23.504 hybrid contribution 0.462 1.291 0.897 1.638 sum -22.041 -2.238 -4.904 22.690 Atomic orbital electron populations 1.23223 0.78787 1.04373 1.01472 1.88036 1.21833 1.25723 1.94609 1.21370 0.93601 0.87496 0.92396 0.85733 1.21089 0.84665 0.82970 0.81581 1.90693 1.67361 1.34536 1.52336 1.45814 1.31962 1.10960 1.47503 1.20717 0.85782 0.98413 0.89782 0.93054 1.21897 0.98407 1.02490 0.92954 1.21539 0.95280 0.98330 0.99600 1.22277 0.99515 0.97898 0.87584 1.61259 1.14179 1.47824 1.03130 1.21724 0.96657 0.93658 0.94927 1.20864 0.82900 0.85173 0.88380 1.90507 1.65692 1.25308 1.68674 1.41933 1.41282 1.17581 1.20422 1.19599 1.24982 1.02754 0.98629 0.90659 1.25965 0.97427 0.94979 1.02735 1.69657 1.37279 1.08071 1.41080 0.84992 0.78370 0.77899 0.77473 1.19856 1.19376 1.19937 1.22139 0.90878 0.96473 0.97303 1.22710 1.03632 1.05159 0.89813 1.22937 1.03323 0.95041 1.00173 1.23145 0.95621 1.00098 0.99328 0.92791 0.88465 0.91649 0.74945 0.89676 0.92518 0.92879 0.88122 0.89278 0.92727 0.86832 0.90899 0.76973 0.91325 0.92692 0.92276 0.87162 0.88337 0.89161 0.87143 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.69 113.37 1.21 1.44 16 2 O -0.38 -8.90 8.24 -129.99 -1.07 -9.98 16 3 C 0.11 2.30 2.94 29.85 0.09 2.39 16 4 H 0.13 1.60 7.69 -2.39 -0.02 1.58 16 5 C 0.51 14.54 7.12 87.66 0.62 15.17 16 6 O -0.57 -22.29 16.17 15.96 0.26 -22.03 16 7 N -0.71 -17.38 4.96 -442.30 -2.19 -19.58 16 8 C 0.16 4.63 2.61 45.04 0.12 4.75 16 9 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 10 C -0.12 -2.72 5.58 30.67 0.17 -2.55 16 11 C -0.11 -2.33 6.09 30.65 0.19 -2.14 16 12 C 0.05 1.20 5.46 86.33 0.47 1.68 16 13 N -0.54 -17.10 4.35 -900.91 -3.92 -21.01 16 14 C 0.06 2.05 5.45 85.56 0.47 2.52 16 15 C 0.44 20.77 7.32 87.66 0.64 21.41 16 16 O -0.62 -34.46 14.28 -3.06 -0.04 -34.50 16 17 N -0.57 -29.21 5.29 -306.99 -1.62 -30.83 16 18 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 19 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 22 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.06 1.87 4.59 86.32 0.40 2.27 16 27 C -0.19 -3.76 5.69 -10.79 -0.06 -3.82 16 28 C -0.18 -3.55 9.87 30.60 0.30 -3.25 16 29 C -0.15 -1.98 10.12 30.60 0.31 -1.67 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 0.57 6.06 -2.39 -0.01 0.56 16 33 H 0.41 7.35 8.60 -92.71 -0.80 6.55 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.06 1.43 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 3.32 7.97 -2.39 -0.02 3.30 16 41 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 42 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 43 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.06 2.36 6.06 -2.39 -0.01 2.35 16 46 H 0.11 2.30 8.00 -2.39 -0.02 2.28 16 47 H 0.10 2.12 7.03 -2.39 -0.02 2.11 16 48 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.11 1.10 6.13 -2.39 -0.01 1.09 16 Total: -1.00 -79.15 401.95 -0.64 -79.79 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.57 Total: 41.88 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.21 Total: 20.11 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -7.45 Total: -120.43 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -0.86 Total: -66.51 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -79.15 -0.64 -79.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317968708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.376 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds