Wall clock time and date at job start Tue Mar 31 2020 22:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99815 * 2 1 4 4 H 1.09004 * 109.46860 * 29.99446 * 3 2 1 5 5 C 1.50699 * 109.47363 * 149.99375 * 3 2 1 6 6 O 1.21286 * 119.99791 * 5.00008 * 5 3 2 7 7 N 1.34770 * 120.00521 * 185.00239 * 5 3 2 8 8 C 1.46492 * 120.00379 * 180.02562 * 7 5 3 9 9 H 1.08999 * 112.85365 * 336.19387 * 8 7 5 10 10 C 1.53961 * 113.66983 * 107.43743 * 8 7 5 11 11 C 1.53784 * 87.01882 * 139.93395 * 10 8 7 12 12 H 1.09002 * 113.61228 * 89.23287 * 11 10 8 13 13 N 1.46901 * 113.61030 * 220.04885 * 11 10 8 14 14 C 1.46905 * 110.99870 * 254.13616 * 13 11 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99431 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00201 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47527 * 89.99837 * 22 20 18 24 24 H 1.48505 * 109.46906 * 209.99968 * 22 20 18 25 25 H 1.48499 * 109.47065 * 329.99736 * 22 20 18 26 26 C 1.53780 * 113.61534 * 204.99710 * 8 7 5 27 27 C 1.52999 * 109.46943 * 269.99614 * 3 2 1 28 28 C 1.53783 * 113.61099 * 159.13883 * 27 3 2 29 29 C 1.53953 * 87.01696 * 220.04770 * 28 27 3 30 30 C 1.53776 * 113.61313 * 61.53140 * 27 3 2 31 31 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47678 * 300.00368 * 1 2 3 33 33 H 1.09001 * 109.46996 * 60.00488 * 1 2 3 34 34 H 0.97006 * 119.99440 * 359.97438 * 7 5 3 35 35 H 1.08990 * 113.61266 * 25.40978 * 10 8 7 36 36 H 1.09003 * 113.66281 * 254.46174 * 10 8 7 37 37 H 1.00901 * 111.00067 * 18.08792 * 13 11 10 38 38 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 39 39 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 40 40 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99652 * 180.02562 * 21 20 18 42 42 H 1.08999 * 113.61874 * 105.46930 * 26 8 7 43 43 H 1.09000 * 113.69471 * 334.57626 * 26 8 7 44 44 H 1.08993 * 112.84537 * 290.32997 * 27 3 2 45 45 H 1.09003 * 113.61511 * 334.56523 * 28 27 3 46 46 H 1.09000 * 113.61459 * 105.46904 * 28 27 3 47 47 H 1.09003 * 113.53625 * 270.81100 * 29 28 27 48 48 H 1.08995 * 113.67099 * 139.93470 * 29 28 27 49 49 H 1.09002 * 113.61390 * 254.52420 * 30 27 3 50 50 H 1.08997 * 113.62078 * 25.35096 * 30 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 3.3385 1.2640 0.7105 6 8 3.7896 0.2046 1.0916 7 7 4.0252 2.4041 0.9226 8 6 5.3168 2.3637 1.6128 9 1 5.4284 1.4872 2.2510 10 6 6.5211 2.6087 0.6854 11 6 7.1239 3.4496 1.8232 12 1 7.7314 2.8709 2.5191 13 7 7.7949 4.6715 1.3599 14 6 9.2553 4.5322 1.4385 15 6 9.9076 5.8023 0.9568 16 8 9.2234 6.7324 0.5851 17 7 11.2513 5.9050 0.9390 18 6 11.8449 7.0608 0.5013 19 1 11.2357 7.8887 0.1704 20 6 13.2303 7.1663 0.4824 21 7 13.7991 8.2740 0.0624 22 14 14.2840 5.7333 1.0528 23 1 14.5839 4.8489 -0.1018 24 1 15.5539 6.2493 1.6241 25 1 13.5519 4.9624 2.0896 26 6 5.6842 3.6842 2.3100 27 6 2.2177 1.7713 -1.4425 28 6 2.3477 3.2970 -1.5844 29 6 1.4920 3.1708 -2.8580 30 6 0.9121 1.8841 -2.2472 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.6646 3.2514 0.6175 35 1 6.2763 3.1891 -0.2040 36 1 7.0904 1.7069 0.4601 37 1 7.5044 4.9108 0.4238 38 1 9.5471 4.3433 2.4715 39 1 9.5749 3.6991 0.8125 40 1 11.7985 5.1613 1.2366 41 1 14.7663 8.3475 0.0489 42 1 5.5789 3.6495 3.3944 43 1 5.2106 4.5602 1.8667 44 1 3.0017 1.2165 -1.9577 45 1 1.8597 3.8532 -0.7839 46 1 3.3673 3.6327 -1.7737 47 1 2.0782 2.9998 -3.7610 48 1 0.7584 3.9686 -2.9732 49 1 0.7745 1.0807 -2.9709 50 1 0.0307 2.0518 -1.6283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480217618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:40 Heat of formation + Delta-G solvation = -66.190803 kcal Electronic energy + Delta-G solvation = -29224.911046 eV Core-core repulsion = 25060.964106 eV Total energy + Delta-G solvation = -4163.946940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91520 -39.68422 -38.57600 -38.06732 -37.24146 -34.67538 -33.91539 -32.68387 -31.64734 -30.04836 -27.10310 -26.86185 -26.07697 -25.85231 -24.69189 -23.85616 -22.52289 -20.79987 -20.17791 -20.02747 -19.33031 -18.31933 -17.79713 -17.25017 -16.63855 -16.44971 -15.98178 -15.68607 -15.48018 -15.10734 -14.89330 -14.82238 -14.63776 -14.13150 -13.87395 -13.68895 -13.36925 -13.15833 -13.03229 -12.91314 -12.63699 -12.57283 -12.43238 -12.33848 -12.12242 -11.95845 -11.78643 -11.44562 -11.29879 -11.19421 -11.03891 -10.99434 -10.90573 -10.83581 -10.59791 -10.25196 -9.98274 -9.59810 -9.58028 -9.26982 -8.59218 -8.20029 -8.11045 -6.31954 -3.83378 2.30550 2.54732 3.02586 3.06516 3.14924 3.48595 3.73232 3.96148 4.08141 4.11079 4.12312 4.19639 4.34207 4.39449 4.42873 4.48917 4.59989 4.71150 4.75964 4.79474 4.91557 4.94589 4.97093 5.12877 5.20973 5.21497 5.29699 5.34657 5.37324 5.45165 5.48253 5.56133 5.58096 5.63379 5.65337 5.73601 5.83631 5.85723 5.88585 5.92618 5.98028 6.30217 6.60243 7.10634 7.22683 7.54484 7.57850 7.95275 8.13645 8.58856 8.94059 9.41670 9.81713 10.81119 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.001832 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.859986 B =15282.242635 C =16002.149102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.356 6.356 3 C 0.083 3.917 4 H 0.085 0.915 5 C 0.515 3.485 6 O -0.521 6.521 7 N -0.714 5.714 8 C 0.123 3.877 9 H 0.115 0.885 10 C -0.182 4.182 11 C 0.071 3.929 12 H 0.100 0.900 13 N -0.654 5.654 14 C 0.047 3.953 15 C 0.449 3.551 16 O -0.566 6.566 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.142 4.142 29 C -0.138 4.138 30 C -0.135 4.135 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.401 0.599 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.353 0.647 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.371 0.629 41 H 0.273 0.727 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.652 -15.779 -0.575 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.273 6.273 3 C 0.021 3.979 4 H 0.103 0.897 5 C 0.300 3.700 6 O -0.396 6.396 7 N -0.367 5.367 8 C 0.017 3.983 9 H 0.133 0.867 10 C -0.222 4.222 11 C -0.041 4.041 12 H 0.118 0.882 13 N -0.286 5.286 14 C -0.086 4.086 15 C 0.235 3.765 16 O -0.448 6.448 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.172 4.172 27 C -0.148 4.148 28 C -0.180 4.180 29 C -0.175 4.175 30 C -0.173 4.173 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.236 0.764 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -26.518 -15.640 0.011 30.787 hybrid contribution 0.882 -1.027 -0.471 1.433 sum -25.637 -16.667 -0.461 30.582 Atomic orbital electron populations 1.23074 0.80737 1.03388 1.00388 1.88039 1.19597 1.24823 1.94842 1.21991 0.93466 0.86928 0.95524 0.89701 1.20407 0.86051 0.84271 0.79233 1.90724 1.69306 1.29740 1.49795 1.45947 1.21640 1.09291 1.59794 1.22457 0.81193 0.99811 0.94801 0.86699 1.24282 0.97725 1.01438 0.98801 1.22819 0.94348 0.90137 0.96770 0.88156 1.60004 1.04833 1.31898 1.31823 1.21757 0.88726 0.96414 1.01710 1.19731 0.82574 0.89475 0.84732 1.90561 1.62488 1.40326 1.51435 1.42216 1.05482 1.15976 1.59296 1.19431 0.90928 0.93224 1.39826 0.86291 1.25046 0.96524 0.97047 0.97566 1.69625 1.10993 1.25489 1.45998 0.86666 0.81036 0.82390 0.79268 1.19658 1.20158 1.19455 1.23464 0.96147 0.96474 1.01066 1.23058 1.00166 0.97108 0.94454 1.23068 1.01506 0.94544 0.98869 1.22807 0.99404 0.97850 0.97480 1.22992 0.96428 0.98559 0.99289 0.89206 0.93958 0.93005 0.76397 0.89391 0.91005 0.82679 0.89405 0.93602 0.79670 0.91613 0.90495 0.88950 0.88009 0.89680 0.90415 0.89818 0.90998 0.90916 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.58 101.05 1.07 1.19 16 2 O -0.36 -3.58 9.85 -55.09 -0.54 -4.12 16 3 C 0.08 0.67 2.44 -27.88 -0.07 0.60 16 4 H 0.09 0.49 7.62 -51.93 -0.40 0.09 16 5 C 0.52 5.56 7.18 -10.99 -0.08 5.48 16 6 O -0.52 -8.01 16.11 -14.31 -0.23 -8.24 16 7 N -0.71 -6.00 5.25 -52.93 -0.28 -6.28 16 8 C 0.12 1.14 4.24 -67.03 -0.28 0.86 16 9 H 0.12 1.22 7.46 -51.93 -0.39 0.83 16 10 C -0.18 -1.79 7.52 -25.82 -0.19 -1.98 16 11 C 0.07 0.76 4.16 -66.90 -0.28 0.49 16 12 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 13 N -0.65 -9.51 6.24 -107.13 -0.67 -10.18 16 14 C 0.05 0.75 6.02 -4.97 -0.03 0.72 16 15 C 0.45 10.06 7.82 -10.99 -0.09 9.97 16 16 O -0.57 -15.00 15.78 5.54 0.09 -14.91 16 17 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 18 C -0.31 -8.61 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 21 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 22 Si 0.88 19.33 27.74 -169.99 -4.72 14.61 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 C -0.13 -1.21 7.63 -25.92 -0.20 -1.41 16 27 C -0.13 -0.85 3.32 -89.81 -0.30 -1.15 16 28 C -0.14 -0.72 6.18 -25.83 -0.16 -0.88 16 29 C -0.14 -0.68 8.09 -25.83 -0.21 -0.89 16 30 C -0.14 -0.70 6.14 -25.92 -0.16 -0.86 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 33 H 0.05 0.23 5.04 -51.93 -0.26 -0.03 16 34 H 0.40 2.45 7.31 -40.82 -0.30 2.15 16 35 H 0.09 0.86 7.83 -51.93 -0.41 0.45 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.35 5.29 7.91 -39.29 -0.31 4.98 16 38 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.32 7.98 -51.93 -0.41 -0.09 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.34 6.48 -51.93 -0.34 0.01 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -35.79 402.30 -8.87 -44.66 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -8.08 Total: 12.93 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.22 Total: 4.39 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.23 Total: -55.39 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.69 Total: -27.27 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.72 Total: 14.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.79 -8.87 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480217618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.534 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds