Wall clock time and date at job start Tue Mar 31 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99815 * 2 1 4 4 H 1.09004 * 109.46860 * 29.99446 * 3 2 1 5 5 C 1.50699 * 109.47363 * 149.99375 * 3 2 1 6 6 O 1.21286 * 119.99791 * 5.00008 * 5 3 2 7 7 N 1.34770 * 120.00521 * 185.00239 * 5 3 2 8 8 C 1.46492 * 120.00379 * 180.02562 * 7 5 3 9 9 H 1.08999 * 112.85365 * 336.19387 * 8 7 5 10 10 C 1.53961 * 113.66983 * 107.43743 * 8 7 5 11 11 C 1.53784 * 87.01882 * 139.93395 * 10 8 7 12 12 H 1.09002 * 113.61228 * 89.23287 * 11 10 8 13 13 N 1.46901 * 113.61030 * 220.04885 * 11 10 8 14 14 C 1.46905 * 110.99870 * 254.13616 * 13 11 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99431 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00201 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47527 * 89.99837 * 22 20 18 24 24 H 1.48505 * 109.46906 * 209.99968 * 22 20 18 25 25 H 1.48499 * 109.47065 * 329.99736 * 22 20 18 26 26 C 1.53780 * 113.61534 * 204.99710 * 8 7 5 27 27 C 1.52999 * 109.46943 * 269.99614 * 3 2 1 28 28 C 1.53783 * 113.61099 * 159.13883 * 27 3 2 29 29 C 1.53953 * 87.01696 * 220.04770 * 28 27 3 30 30 C 1.53776 * 113.61313 * 61.53140 * 27 3 2 31 31 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47678 * 300.00368 * 1 2 3 33 33 H 1.09001 * 109.46996 * 60.00488 * 1 2 3 34 34 H 0.97006 * 119.99440 * 359.97438 * 7 5 3 35 35 H 1.08990 * 113.61266 * 25.40978 * 10 8 7 36 36 H 1.09003 * 113.66281 * 254.46174 * 10 8 7 37 37 H 1.00901 * 111.00067 * 18.08792 * 13 11 10 38 38 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 39 39 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 40 40 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99652 * 180.02562 * 21 20 18 42 42 H 1.08999 * 113.61874 * 105.46930 * 26 8 7 43 43 H 1.09000 * 113.69471 * 334.57626 * 26 8 7 44 44 H 1.08993 * 112.84537 * 290.32997 * 27 3 2 45 45 H 1.09003 * 113.61511 * 334.56523 * 28 27 3 46 46 H 1.09000 * 113.61459 * 105.46904 * 28 27 3 47 47 H 1.09003 * 113.53625 * 270.81100 * 29 28 27 48 48 H 1.08995 * 113.67099 * 139.93470 * 29 28 27 49 49 H 1.09002 * 113.61390 * 254.52420 * 30 27 3 50 50 H 1.08997 * 113.62078 * 25.35096 * 30 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 3.3385 1.2640 0.7105 6 8 3.7896 0.2046 1.0916 7 7 4.0252 2.4041 0.9226 8 6 5.3168 2.3637 1.6128 9 1 5.4284 1.4872 2.2510 10 6 6.5211 2.6087 0.6854 11 6 7.1239 3.4496 1.8232 12 1 7.7314 2.8709 2.5191 13 7 7.7949 4.6715 1.3599 14 6 9.2553 4.5322 1.4385 15 6 9.9076 5.8023 0.9568 16 8 9.2234 6.7324 0.5851 17 7 11.2513 5.9050 0.9390 18 6 11.8449 7.0608 0.5013 19 1 11.2357 7.8887 0.1704 20 6 13.2303 7.1663 0.4824 21 7 13.7991 8.2740 0.0624 22 14 14.2840 5.7333 1.0528 23 1 14.5839 4.8489 -0.1018 24 1 15.5539 6.2493 1.6241 25 1 13.5519 4.9624 2.0896 26 6 5.6842 3.6842 2.3100 27 6 2.2177 1.7713 -1.4425 28 6 2.3477 3.2970 -1.5844 29 6 1.4920 3.1708 -2.8580 30 6 0.9121 1.8841 -2.2472 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.6646 3.2514 0.6175 35 1 6.2763 3.1891 -0.2040 36 1 7.0904 1.7069 0.4601 37 1 7.5044 4.9108 0.4238 38 1 9.5471 4.3433 2.4715 39 1 9.5749 3.6991 0.8125 40 1 11.7985 5.1613 1.2366 41 1 14.7663 8.3475 0.0489 42 1 5.5789 3.6495 3.3944 43 1 5.2106 4.5602 1.8667 44 1 3.0017 1.2165 -1.9577 45 1 1.8597 3.8532 -0.7839 46 1 3.3673 3.6327 -1.7737 47 1 2.0782 2.9998 -3.7610 48 1 0.7584 3.9686 -2.9732 49 1 0.7745 1.0807 -2.9709 50 1 0.0307 2.0518 -1.6283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480217618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:38 Heat of formation + Delta-G solvation = -94.308915 kcal Electronic energy + Delta-G solvation = -29226.130338 eV Core-core repulsion = 25060.964106 eV Total energy + Delta-G solvation = -4165.166233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62402 -40.55954 -40.00782 -39.06815 -37.84447 -36.14605 -35.45670 -33.83508 -33.58856 -30.66061 -28.54967 -27.38118 -26.62976 -26.51771 -25.98703 -24.92335 -23.38253 -21.60062 -21.35298 -20.91828 -20.46893 -20.15552 -18.51145 -18.01954 -17.65999 -17.16264 -17.04224 -16.98147 -16.50212 -16.20346 -15.98444 -15.83001 -15.56814 -15.34078 -14.82738 -14.67344 -14.56600 -14.43673 -14.13899 -14.06279 -13.51622 -13.45485 -13.41296 -13.17579 -12.98524 -12.90610 -12.85038 -12.45117 -12.41185 -12.16259 -12.01694 -11.94079 -11.86778 -11.75492 -11.50759 -11.43623 -11.29642 -10.90819 -10.41892 -10.25730 -10.24312 -10.06913 -9.23562 -8.41003 -6.01666 1.30989 1.35751 1.44835 1.49775 1.87119 1.96512 2.23259 2.74715 2.95088 3.15723 3.37860 3.42615 3.62188 3.62847 3.73861 3.76235 3.88857 3.92304 3.93739 4.00356 4.08060 4.18120 4.31653 4.47189 4.51150 4.51748 4.53475 4.63480 4.76641 4.79432 4.80543 4.81390 4.85946 4.92680 5.00213 5.07793 5.09159 5.09626 5.12018 5.23483 5.51199 5.52118 5.55676 5.92927 6.05695 6.11395 6.40482 6.53241 6.60367 6.88599 7.18968 7.40514 7.96827 8.76526 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.001832 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.859986 B =15282.242635 C =16002.149102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.391 6.391 3 C 0.086 3.914 4 H 0.113 0.887 5 C 0.511 3.489 6 O -0.574 6.574 7 N -0.700 5.700 8 C 0.125 3.875 9 H 0.104 0.896 10 C -0.176 4.176 11 C 0.070 3.930 12 H 0.114 0.886 13 N -0.669 5.669 14 C 0.060 3.940 15 C 0.448 3.552 16 O -0.614 6.614 17 N -0.592 5.592 18 C -0.328 4.328 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.231 1.231 26 C -0.122 4.122 27 C -0.131 4.131 28 C -0.138 4.138 29 C -0.138 4.138 30 C -0.130 4.130 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.347 0.653 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.527 -17.765 0.599 32.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.310 6.310 3 C 0.025 3.975 4 H 0.131 0.869 5 C 0.298 3.702 6 O -0.453 6.453 7 N -0.352 5.352 8 C 0.020 3.980 9 H 0.122 0.878 10 C -0.217 4.217 11 C -0.041 4.041 12 H 0.132 0.868 13 N -0.300 5.300 14 C -0.072 4.072 15 C 0.236 3.764 16 O -0.498 6.498 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.784 3.216 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.154 1.154 26 C -0.161 4.161 27 C -0.150 4.150 28 C -0.176 4.176 29 C -0.175 4.175 30 C -0.167 4.167 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.252 0.748 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.432 -17.615 1.188 32.622 hybrid contribution 1.033 -0.322 -0.887 1.399 sum -26.399 -17.937 0.301 31.918 Atomic orbital electron populations 1.23269 0.78870 1.04223 1.01762 1.87995 1.21786 1.26128 1.95066 1.22086 0.92310 0.86994 0.96131 0.86926 1.21006 0.86919 0.83809 0.78510 1.90693 1.70769 1.31629 1.52204 1.45846 1.21095 1.09454 1.58834 1.22322 0.81468 0.99571 0.94651 0.87806 1.24222 0.97729 1.01052 0.98676 1.22943 0.94899 0.88978 0.97269 0.86798 1.60035 1.04095 1.34192 1.31698 1.21694 0.89238 0.92956 1.03335 1.21023 0.81976 0.90976 0.82423 1.90539 1.63531 1.42840 1.52922 1.42053 1.06282 1.15139 1.59857 1.19014 0.91276 0.93722 1.41761 0.92586 1.26112 0.97602 1.00795 0.96891 1.69806 1.11776 1.28576 1.47301 0.85372 0.78312 0.77952 0.79945 1.18237 1.20075 1.15433 1.23392 0.94880 0.96179 1.01606 1.23005 1.00579 0.97908 0.93552 1.23118 1.01539 0.93337 0.99586 1.22802 0.99516 0.98073 0.97143 1.23009 0.96177 0.98467 0.99037 0.88842 0.92744 0.91343 0.74846 0.89337 0.91348 0.83318 0.86769 0.90634 0.77495 0.91173 0.89575 0.88675 0.90323 0.87702 0.90987 0.90498 0.89898 0.91358 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.58 113.37 1.20 1.35 16 2 O -0.39 -7.64 9.85 -129.99 -1.28 -8.92 16 3 C 0.09 1.28 2.44 29.85 0.07 1.36 16 4 H 0.11 1.00 7.62 -2.39 -0.02 0.98 16 5 C 0.51 10.73 7.18 87.66 0.63 11.36 16 6 O -0.57 -17.91 16.11 15.94 0.26 -17.66 16 7 N -0.70 -10.81 5.25 -439.77 -2.31 -13.12 16 8 C 0.13 2.15 4.24 45.58 0.19 2.35 16 9 H 0.10 2.10 7.46 -2.39 -0.02 2.09 16 10 C -0.18 -3.17 7.52 31.18 0.23 -2.93 16 11 C 0.07 1.33 4.16 45.44 0.19 1.51 16 12 H 0.11 1.90 7.88 -2.39 -0.02 1.88 16 13 N -0.67 -18.07 6.24 -492.84 -3.07 -21.15 16 14 C 0.06 1.75 6.02 85.55 0.52 2.27 16 15 C 0.45 19.83 7.82 87.66 0.69 20.52 16 16 O -0.61 -33.40 15.78 -3.08 -0.05 -33.44 16 17 N -0.59 -27.62 5.09 -306.99 -1.56 -29.18 16 18 C -0.33 -19.17 10.16 84.04 0.85 -18.31 16 19 H 0.06 3.89 7.39 -2.92 -0.02 3.87 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 21 N -0.93 -56.19 13.96 21.67 0.30 -55.89 16 22 Si 0.96 38.67 27.74 68.60 1.90 40.57 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 26 C -0.12 -1.95 7.63 31.12 0.24 -1.71 16 27 C -0.13 -1.60 3.32 -10.27 -0.03 -1.63 16 28 C -0.14 -1.14 6.18 31.18 0.19 -0.95 16 29 C -0.14 -1.12 8.09 31.18 0.25 -0.87 16 30 C -0.13 -1.10 6.14 31.12 0.19 -0.91 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.07 0.45 5.04 -2.39 -0.01 0.44 16 34 H 0.41 4.22 7.31 -92.70 -0.68 3.54 16 35 H 0.09 1.60 7.83 -2.39 -0.02 1.58 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.35 10.01 7.91 -89.69 -0.71 9.30 16 38 H 0.11 2.82 8.13 -2.39 -0.02 2.80 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.39 15.03 5.76 -92.70 -0.53 14.50 16 41 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 0.46 7.98 -2.39 -0.02 0.44 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.10 0.52 6.48 -2.39 -0.02 0.51 16 Total: -1.00 -84.06 402.30 -0.94 -84.99 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -1.00 Total: 40.79 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.88 Total: 13.00 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -6.64 Total: -119.34 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -1.07 Total: -60.02 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.57 kcal Total: -84.06 -0.94 -84.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480217618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.314 kcal (2) G-P(sol) polarization free energy of solvation -84.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds