Wall clock time and date at job start Tue Mar 31 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45205 * 109.47037 * 2 1 4 4 C 1.34230 * 116.99828 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99780 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00106 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47338 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47427 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.46776 * 60.00101 * 8 7 6 10 10 O 1.42894 * 109.47078 * 60.00075 * 9 8 7 11 11 C 1.53001 * 109.46818 * 180.02562 * 9 8 7 12 12 N 1.46899 * 109.46836 * 305.92747 * 11 9 8 13 13 C 1.46850 * 110.99799 * 285.95030 * 12 11 9 14 14 C 1.53043 * 109.52135 * 174.16257 * 13 12 11 15 15 C 1.53113 * 109.27764 * 59.18161 * 14 13 12 16 16 C 1.50704 * 109.52240 * 182.43818 * 15 14 13 17 17 H 1.07999 * 119.99788 * 119.68447 * 16 15 14 18 18 C 1.37877 * 120.00003 * 299.68587 * 16 15 14 19 19 N 1.31514 * 120.00104 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00145 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.46848 * 89.99837 * 20 18 16 22 22 H 1.48493 * 109.47115 * 210.00102 * 20 18 16 23 23 H 1.48507 * 109.46831 * 330.00044 * 20 18 16 24 24 C 1.53114 * 109.16404 * 302.34574 * 15 14 13 25 25 C 1.46853 * 111.00081 * 161.74685 * 12 11 9 26 26 C 1.53003 * 109.46971 * 299.99971 * 9 8 7 27 27 C 1.53001 * 109.47005 * 60.00536 * 26 9 8 28 28 H 1.08996 * 109.47788 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47191 * 300.00481 * 1 2 3 30 30 H 1.08998 * 109.47445 * 60.00003 * 1 2 3 31 31 H 1.08993 * 109.47412 * 239.99872 * 2 1 3 32 32 H 1.09003 * 109.47161 * 119.99624 * 2 1 3 33 33 H 1.08999 * 109.47010 * 300.00406 * 6 4 3 34 34 H 1.09004 * 109.47043 * 59.99649 * 7 6 4 35 35 H 1.08999 * 109.47513 * 300.00234 * 7 6 4 36 36 H 1.08999 * 109.46966 * 300.00570 * 8 7 6 37 37 H 1.08993 * 109.47267 * 179.97438 * 8 7 6 38 38 H 0.96697 * 114.00298 * 299.99387 * 10 9 8 39 39 H 1.09006 * 109.47131 * 65.92448 * 11 9 8 40 40 H 1.08997 * 109.47077 * 185.92507 * 11 9 8 41 41 H 1.09001 * 109.46691 * 294.18021 * 13 12 11 42 42 H 1.09004 * 109.46019 * 54.15313 * 13 12 11 43 43 H 1.09000 * 109.50413 * 299.24129 * 14 13 12 44 44 H 1.09002 * 109.49984 * 179.12518 * 14 13 12 45 45 H 1.09007 * 109.51936 * 62.25068 * 15 14 13 46 46 H 0.96994 * 120.00177 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.50171 * 297.71380 * 24 15 14 48 48 H 1.09003 * 109.50704 * 177.59563 * 24 15 14 49 49 H 1.09002 * 109.45781 * 305.85704 * 25 12 11 50 50 H 1.08997 * 109.45923 * 65.81633 * 25 12 11 51 51 H 1.09001 * 109.47160 * 180.02562 * 26 9 8 52 52 H 1.08997 * 109.47029 * 300.00447 * 26 9 8 53 53 H 1.09002 * 109.46813 * 180.02562 * 27 26 9 54 54 H 1.08992 * 109.47453 * 59.99628 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8574 0.0014 8 6 6.0334 4.2712 0.0002 9 6 5.5608 5.0196 1.2482 10 8 6.0002 4.3233 2.4161 11 6 6.1451 6.4336 1.2467 12 7 7.6054 6.3598 1.1047 13 6 8.2332 5.9071 2.3527 14 6 9.7329 5.7027 2.1258 15 6 10.3592 7.0224 1.6670 16 6 11.8246 6.8130 1.3845 17 1 12.2158 6.9993 0.3952 18 6 12.6659 6.3836 2.3889 19 7 13.9448 6.2013 2.1425 20 14 11.9894 6.0620 4.1002 21 1 11.5516 4.6467 4.2015 22 1 13.0472 6.3264 5.1083 23 1 10.8316 6.9575 4.3510 24 6 9.6551 7.4967 0.3928 25 6 8.1577 7.6491 0.6698 26 6 4.0329 5.0997 1.2467 27 6 3.4481 3.6858 1.2480 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5852 3.4691 -0.8904 34 1 5.7853 2.3245 -0.8879 35 1 5.7838 2.3259 0.8921 36 1 5.6982 4.8023 -0.8907 37 1 7.1219 4.2141 0.0017 38 1 5.6669 3.4181 2.4831 39 1 5.7272 6.9986 0.4134 40 1 5.8959 6.9308 2.1841 41 1 8.0822 6.6578 3.1284 42 1 7.7817 4.9656 2.6656 43 1 9.8848 4.9421 1.3600 44 1 10.2012 5.3817 3.0563 45 1 10.2416 7.7727 2.4490 46 1 14.5366 5.8989 2.8490 47 1 9.8058 6.7644 -0.4003 48 1 10.0678 8.4575 0.0850 49 1 7.6512 7.9730 -0.2394 50 1 8.0070 8.3916 1.4534 51 1 3.6961 5.6333 2.1356 52 1 3.6978 5.6307 0.3558 53 1 2.3596 3.7429 1.2465 54 1 3.7832 3.1548 2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574384224.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:50 Heat of formation + Delta-G solvation = -173.072352 kcal Electronic energy + Delta-G solvation = -31380.748314 eV Core-core repulsion = 27315.706986 eV Total energy + Delta-G solvation = -4065.041328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.91708 -40.75227 -39.35386 -37.75605 -36.01276 -35.44213 -33.76727 -32.70236 -31.83518 -31.64131 -31.44065 -28.43130 -26.42019 -24.52104 -24.05052 -23.69512 -23.33057 -22.51801 -21.43292 -20.44166 -20.38019 -18.82064 -18.74408 -18.23875 -17.60092 -17.39248 -17.16333 -16.21675 -16.02221 -15.69766 -15.41783 -15.26820 -15.05640 -14.91875 -14.76425 -14.39335 -14.33519 -14.11286 -13.98502 -13.60228 -13.51730 -13.44015 -13.20944 -12.91626 -12.88949 -12.86093 -12.60625 -12.54408 -12.47142 -12.26879 -12.10367 -12.06046 -11.78109 -11.74088 -11.59986 -11.56909 -11.49338 -11.35273 -11.11222 -10.92012 -10.73713 -10.60465 -10.30893 -9.09392 -8.30262 -6.32044 1.13791 1.28578 1.31801 1.42941 1.66150 2.31151 3.02857 3.05334 3.38854 3.47905 3.69376 3.73344 3.95741 3.99492 4.07381 4.08558 4.12102 4.24612 4.26958 4.32053 4.33549 4.35594 4.45690 4.47452 4.51334 4.66093 4.72147 4.77449 4.79547 4.83802 4.85565 4.89363 4.92255 4.92434 4.99549 5.03871 5.13657 5.14918 5.19355 5.20201 5.24909 5.29648 5.34801 5.45536 5.52170 5.58605 5.61691 5.70550 5.81727 6.26684 6.34178 6.37635 6.70497 6.74983 6.91103 7.32903 8.86831 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.002424 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.595526 B =11546.041154 C =12009.055436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.073 4.073 7 C -0.104 4.104 8 C -0.125 4.125 9 C 0.138 3.862 10 O -0.568 6.568 11 C 0.065 3.935 12 N -0.531 5.531 13 C 0.061 3.939 14 C -0.111 4.111 15 C 0.010 3.990 16 C -0.513 4.513 17 H 0.033 0.967 18 C 0.009 3.991 19 N -0.951 5.951 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.298 1.298 23 H -0.253 1.253 24 C -0.091 4.091 25 C 0.063 3.937 26 C -0.132 4.132 27 C -0.105 4.105 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.374 0.626 39 H 0.109 0.891 40 H 0.035 0.965 41 H 0.010 0.990 42 H 0.106 0.894 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.012 0.988 46 H 0.264 0.736 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.025 0.975 51 H 0.080 0.920 52 H 0.097 0.903 53 H 0.096 0.904 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.133 -6.845 -3.870 35.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.092 4.092 7 C -0.141 4.141 8 C -0.163 4.163 9 C 0.098 3.902 10 O -0.377 6.377 11 C -0.063 4.063 12 N -0.255 5.255 13 C -0.067 4.067 14 C -0.149 4.149 15 C -0.009 4.009 16 C -0.551 4.551 17 H 0.051 0.949 18 C -0.187 4.187 19 N -0.592 5.592 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.226 1.226 23 H -0.178 1.178 24 C -0.129 4.129 25 C -0.065 4.065 26 C -0.170 4.170 27 C -0.142 4.142 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.224 0.776 39 H 0.127 0.873 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.123 0.877 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.114 0.886 50 H 0.043 0.957 51 H 0.099 0.901 52 H 0.116 0.884 53 H 0.114 0.886 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -33.392 -6.978 -4.061 34.354 hybrid contribution 0.637 -0.599 1.248 1.524 sum -32.755 -7.577 -2.813 33.738 Atomic orbital electron populations 1.21813 0.90372 1.04263 1.03838 1.23256 0.97126 0.79517 1.02287 1.86514 1.24036 1.33311 1.83518 1.24294 0.80571 0.93180 0.70957 1.90679 1.61243 1.44505 1.46760 1.21234 0.95741 0.88471 1.03726 1.21419 0.92116 0.97795 1.02794 1.21967 1.01596 0.94140 0.98610 1.21307 0.92891 0.91232 0.84785 1.86555 1.75675 1.30903 1.44590 1.22231 0.87129 0.95348 1.01571 1.61865 1.04418 1.28252 1.31003 1.22298 0.93669 1.01072 0.89636 1.21843 0.94899 0.99327 0.98787 1.19171 0.93029 0.93408 0.95244 1.21435 0.93309 1.43672 0.96725 0.94876 1.25870 0.94866 0.95030 1.02927 1.70050 1.05260 1.49065 1.34835 0.85803 0.77588 0.79325 0.79401 1.19562 1.22584 1.17753 1.21375 0.94111 1.00007 0.97439 1.22119 0.94876 0.89466 1.00026 1.22113 0.93441 0.96776 1.04670 1.21490 1.02429 0.95312 0.94982 0.88550 0.91125 0.91108 0.91653 0.91678 0.84945 0.91802 0.92304 0.89601 0.91625 0.77564 0.87330 0.94703 0.97152 0.87662 0.93050 0.95212 0.97013 0.92686 0.93050 0.92707 0.88594 0.95654 0.90146 0.88415 0.88562 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 71.98 0.74 -0.26 16 2 C 0.05 0.66 6.19 71.98 0.45 1.11 16 3 O -0.36 -5.59 10.12 -51.42 -0.52 -6.11 16 4 C 0.47 8.54 7.26 71.24 0.52 9.06 16 5 O -0.54 -13.90 15.73 21.96 0.35 -13.55 16 6 C -0.07 -0.97 2.63 -11.54 -0.03 -1.00 16 7 C -0.10 -1.86 4.24 30.59 0.13 -1.73 16 8 C -0.13 -2.37 4.72 30.60 0.14 -2.23 16 9 C 0.14 2.49 0.85 -10.79 -0.01 2.48 16 10 O -0.57 -12.62 9.85 -148.98 -1.47 -14.09 16 11 C 0.06 1.38 4.34 86.30 0.37 1.76 16 12 N -0.53 -15.80 3.58 -896.32 -3.21 -19.01 16 13 C 0.06 2.19 5.19 86.33 0.45 2.64 16 14 C -0.11 -4.96 4.84 30.65 0.15 -4.82 16 15 C 0.01 0.50 1.75 -11.46 -0.02 0.48 16 16 C -0.51 -30.55 9.14 25.60 0.23 -30.32 16 17 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 18 C 0.01 0.58 5.45 84.65 0.46 1.04 16 19 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 20 Si 0.95 47.92 24.37 68.60 1.67 49.59 16 21 H -0.27 -13.08 6.89 99.48 0.69 -12.39 16 22 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 23 H -0.25 -12.04 6.53 99.48 0.65 -11.39 16 24 C -0.09 -3.66 5.32 30.64 0.16 -3.49 16 25 C 0.06 1.91 5.43 86.32 0.47 2.38 16 26 C -0.13 -1.46 4.94 30.60 0.15 -1.30 16 27 C -0.10 -1.10 4.88 30.60 0.15 -0.95 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.88 8.13 -2.39 -0.02 0.87 16 32 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.06 1.20 6.74 -2.39 -0.02 1.19 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.74 7.45 -2.39 -0.02 1.72 16 38 H 0.37 6.66 5.69 -74.06 -0.42 6.24 16 39 H 0.11 1.73 7.83 -2.38 -0.02 1.71 16 40 H 0.03 0.79 8.02 -2.39 -0.02 0.77 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.11 3.64 5.08 -2.38 -0.01 3.63 16 43 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.03 1.41 3.38 -2.39 -0.01 1.40 16 45 H 0.01 0.59 7.19 -2.38 -0.02 0.57 16 46 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 47 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.10 2.30 7.94 -2.39 -0.02 2.28 16 50 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.10 0.78 8.11 -2.39 -0.02 0.76 16 54 H 0.06 0.76 6.78 -2.39 -0.02 0.74 16 Total: -1.00 -75.13 398.18 2.01 -73.12 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.37 Total: 16.65 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.52 Total: -25.16 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.91 Total: -80.44 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.64 Total: -33.75 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.67 Total: 49.59 kcal Total: -75.13 2.01 -73.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574384224.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.954 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds