Wall clock time and date at job start Tue Mar 31 2020 22:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46844 * 111.00192 * 2 1 4 4 C 1.53043 * 109.52486 * 185.84254 * 3 2 1 5 5 C 1.53121 * 109.27463 * 300.81769 * 4 3 2 6 6 C 1.53115 * 109.15327 * 57.65765 * 5 4 3 7 7 C 1.53007 * 109.49396 * 182.39449 * 6 5 4 8 8 C 1.52997 * 109.51000 * 62.27677 * 6 5 4 9 9 C 1.46855 * 110.99827 * 124.20598 * 2 1 3 10 10 H 1.08998 * 109.46420 * 294.16367 * 9 2 1 11 11 C 1.52999 * 109.46220 * 54.14457 * 9 2 1 12 12 N 1.46494 * 109.46934 * 188.68058 * 11 9 2 13 13 C 1.34780 * 119.99651 * 185.98596 * 12 11 9 14 14 O 1.21582 * 120.00263 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99714 * 179.97438 * 13 12 11 16 16 C 1.47429 * 125.64959 * 0.04482 * 15 13 12 17 17 C 1.55117 * 104.94055 * 203.96432 * 16 15 13 18 18 C 1.55159 * 101.48884 * 323.21928 * 17 16 15 19 19 O 1.42899 * 110.72204 * 276.83344 * 18 17 16 20 20 C 1.50706 * 110.72012 * 153.73387 * 18 17 16 21 21 H 1.07998 * 119.99484 * 269.71987 * 20 18 17 22 22 C 1.37876 * 119.99629 * 89.99441 * 20 18 17 23 23 N 1.31511 * 119.99658 * 172.13680 * 22 20 18 24 24 Si 1.86796 * 120.00237 * 352.14192 * 22 20 18 25 25 H 1.48507 * 109.47378 * 85.84811 * 24 22 20 26 26 H 1.48498 * 109.47397 * 205.84860 * 24 22 20 27 27 H 1.48497 * 109.47306 * 325.85228 * 24 22 20 28 28 C 1.47020 * 125.64858 * 179.97438 * 15 13 12 29 29 H 1.09002 * 109.47032 * 289.23230 * 1 2 3 30 30 H 1.08997 * 109.46814 * 49.22728 * 1 2 3 31 31 H 1.09000 * 109.47333 * 169.23303 * 1 2 3 32 32 H 1.09005 * 109.46223 * 305.85322 * 3 2 1 33 33 H 1.08994 * 109.46745 * 65.82970 * 3 2 1 34 34 H 1.09004 * 109.50290 * 60.75300 * 4 3 2 35 35 H 1.08994 * 109.50405 * 180.83767 * 4 3 2 36 36 H 1.08994 * 109.52079 * 177.56198 * 5 4 3 37 37 H 1.09009 * 109.52175 * 297.68677 * 5 4 3 38 38 H 1.09004 * 109.46959 * 187.46525 * 7 6 5 39 39 H 1.09000 * 109.46980 * 307.46438 * 7 6 5 40 40 H 1.09000 * 109.46978 * 67.46881 * 7 6 5 41 41 H 1.08992 * 109.47455 * 300.19174 * 8 6 5 42 42 H 1.09006 * 109.47329 * 60.19166 * 8 6 5 43 43 H 1.09006 * 109.47381 * 180.18859 * 8 6 5 44 44 H 1.09003 * 109.47094 * 68.67570 * 11 9 2 45 45 H 1.09004 * 109.47116 * 308.68269 * 11 9 2 46 46 H 0.96998 * 120.00399 * 5.98297 * 12 11 9 47 47 H 1.08995 * 110.36065 * 322.92860 * 16 15 13 48 48 H 1.09000 * 110.36216 * 85.13901 * 16 15 13 49 49 H 1.09006 * 111.16172 * 205.13077 * 17 16 15 50 50 H 1.08999 * 110.93938 * 81.21421 * 17 16 15 51 51 H 0.96700 * 113.99875 * 181.54372 * 19 18 17 52 52 H 0.96999 * 120.00196 * 180.02562 * 23 22 20 53 53 H 1.08999 * 109.88618 * 59.55876 * 28 15 13 54 54 H 1.09004 * 109.88420 * 298.40093 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.5181 -0.8714 1.0206 7 6 4.0682 -1.6559 2.2136 8 6 3.8874 -1.5903 -0.2785 9 6 1.9953 -0.7708 1.1339 10 1 1.7327 -0.2707 2.0661 11 6 1.3891 -2.1755 1.1206 12 7 1.7480 -2.8739 2.3573 13 6 1.4253 -4.1728 2.5156 14 8 0.8367 -4.7651 1.6318 15 7 1.7559 -4.8155 3.6532 16 6 2.4667 -4.2216 4.8002 17 6 3.1320 -5.4218 5.5234 18 6 2.0521 -6.5227 5.3528 19 8 1.0448 -6.4032 6.3594 20 6 2.6777 -7.8933 5.3873 21 1 3.0140 -8.3565 4.4715 22 6 2.8156 -8.5581 6.5873 23 7 3.2166 -9.8105 6.6029 24 14 2.4326 -7.6800 8.1909 25 1 0.9802 -7.7895 8.4807 26 1 3.2059 -8.3045 9.2942 27 1 2.8071 -6.2479 8.0728 28 6 1.4661 -6.2246 3.9566 29 1 -0.3633 0.3385 0.9703 30 1 -0.3633 0.6711 -0.7782 31 1 -0.3634 -1.0096 -0.1920 32 1 1.5635 1.9257 -0.8330 33 1 1.7327 1.8608 0.9375 34 1 3.7814 0.8566 -1.0907 35 1 3.9099 2.3511 -0.1319 36 1 5.1998 0.4714 0.8905 37 1 3.8897 1.0361 1.9559 38 1 3.7463 -2.6950 2.1447 39 1 5.1573 -1.6116 2.2064 40 1 3.6929 -1.2198 3.1394 41 1 3.4966 -1.0297 -1.1276 42 1 4.9721 -1.6618 -0.3586 43 1 3.4566 -2.5916 -0.2748 44 1 1.7751 -2.7297 0.2651 45 1 0.3040 -2.1023 1.0463 46 1 2.2178 -2.4015 3.0623 47 1 3.2244 -3.5186 4.4541 48 1 1.7625 -3.7222 5.4655 49 1 3.3019 -5.2011 6.5773 50 1 4.0617 -5.7068 5.0308 51 1 0.3584 -7.0826 6.3114 52 1 3.3133 -10.2783 7.4470 53 1 1.9357 -6.8682 3.2126 54 1 0.3885 -6.3883 3.9639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592017849.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:13 Heat of formation + Delta-G solvation = -80.367795 kcal Electronic energy + Delta-G solvation = -32106.038890 eV Core-core repulsion = 28077.310285 eV Total energy + Delta-G solvation = -4028.728606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.81634 -40.83463 -39.32724 -36.38546 -36.35191 -35.69487 -34.44400 -33.04117 -31.70721 -30.06099 -29.18888 -28.23692 -27.51609 -27.20225 -25.87028 -24.01796 -22.51521 -22.35595 -21.57385 -21.08113 -19.78094 -19.38947 -18.78469 -17.51261 -17.22999 -17.07562 -16.62839 -16.39590 -16.29657 -16.04768 -15.72649 -15.25968 -15.16649 -14.88051 -14.62248 -14.51881 -14.26274 -14.07310 -14.00762 -13.96158 -13.44873 -13.35019 -13.25551 -13.21839 -13.05248 -12.87693 -12.75762 -12.70419 -12.34378 -12.31743 -12.21414 -12.14514 -11.89299 -11.82014 -11.36050 -11.35349 -11.25307 -11.12236 -11.01449 -10.62396 -10.42679 -10.11535 -9.42483 -9.27833 -8.34501 -6.48793 1.51287 1.53528 1.55413 1.74784 2.10064 2.43717 2.77676 2.97155 3.17699 3.48576 3.54850 3.64855 3.81881 3.88032 4.05433 4.11732 4.14981 4.23648 4.28168 4.37285 4.41768 4.44646 4.51950 4.55434 4.57805 4.63175 4.68602 4.76063 4.81670 4.84183 4.91342 4.94689 4.97497 4.99512 5.05141 5.08973 5.13467 5.16871 5.18927 5.20586 5.32189 5.37002 5.41983 5.42787 5.45203 5.50729 5.63236 6.02510 6.04349 6.08123 6.14774 6.58328 6.91347 6.96810 7.27731 7.51148 8.79029 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.002667 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.427561 B =10496.117698 C =10819.225365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.057 3.943 4 C -0.118 4.118 5 C -0.107 4.107 6 C -0.053 4.053 7 C -0.162 4.162 8 C -0.133 4.133 9 C 0.095 3.905 10 H 0.051 0.949 11 C 0.142 3.858 12 N -0.726 5.726 13 C 0.714 3.286 14 O -0.639 6.639 15 N -0.630 5.630 16 C 0.106 3.894 17 C -0.118 4.118 18 C 0.220 3.780 19 O -0.560 6.560 20 C -0.553 4.553 21 H 0.037 0.963 22 C 0.024 3.976 23 N -0.936 5.936 24 Si 1.006 2.994 25 H -0.279 1.279 26 H -0.335 1.335 27 H -0.248 1.248 28 C 0.122 3.878 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.409 0.591 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.382 0.618 52 H 0.268 0.732 53 H 0.043 0.957 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 28.165 -9.218 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.053 4.053 7 C -0.220 4.220 8 C -0.190 4.190 9 C -0.014 4.014 10 H 0.069 0.931 11 C 0.018 3.982 12 N -0.386 5.386 13 C 0.416 3.584 14 O -0.521 6.521 15 N -0.367 5.367 16 C -0.016 4.016 17 C -0.157 4.157 18 C 0.179 3.821 19 O -0.369 6.369 20 C -0.590 4.590 21 H 0.055 0.945 22 C -0.176 4.176 23 N -0.574 5.574 24 Si 0.837 3.163 25 H -0.206 1.206 26 H -0.267 1.267 27 H -0.173 1.173 28 C -0.003 4.003 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.249 0.751 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.098 0.902 51 H 0.232 0.768 52 H 0.077 0.923 53 H 0.062 0.938 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.049 27.955 -10.139 29.737 hybrid contribution -0.605 -0.785 1.368 1.689 sum -0.556 27.169 -8.771 28.555 Atomic orbital electron populations 1.22484 0.86828 1.02667 1.00983 1.61801 1.08007 1.14473 1.42251 1.22176 0.96063 0.87719 1.01070 1.21650 0.93953 1.00788 0.99153 1.21650 1.00351 0.93534 0.98958 1.20539 0.92414 0.96357 0.95990 1.22316 1.01953 1.00351 0.97403 1.21821 1.00517 0.99223 0.97418 1.21708 0.95095 0.91801 0.92758 0.93084 1.21313 0.99125 0.92045 0.85749 1.45338 1.63282 1.08729 1.21241 1.15610 0.79482 0.82192 0.81132 1.90863 1.49688 1.68197 1.43392 1.47591 1.60783 1.12187 1.16151 1.22483 0.95855 0.96270 0.86959 1.23036 0.97695 0.93384 1.01542 1.19936 0.85606 0.93651 0.82917 1.86092 1.39307 1.57154 1.54311 1.21393 1.42198 1.01048 0.94387 0.94453 1.25933 0.93229 0.94770 1.03661 1.70094 1.47354 1.11626 1.28312 0.84824 0.77186 0.78828 0.75423 1.20599 1.26729 1.17317 1.22351 0.99263 0.80450 0.98193 0.95290 0.89817 0.91887 0.89558 0.94630 0.91283 0.89954 0.90972 0.91601 0.92634 0.91410 0.91459 0.91197 0.92764 0.94719 0.91903 0.92480 0.75050 0.88603 0.90293 0.89265 0.90242 0.76850 0.92292 0.93835 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.90 127.69 1.14 1.40 16 2 N -0.54 -8.33 4.03 -897.14 -3.62 -11.95 16 3 C 0.06 0.65 5.46 86.33 0.47 1.13 16 4 C -0.12 -1.23 5.74 30.65 0.18 -1.05 16 5 C -0.11 -1.25 4.79 30.67 0.15 -1.11 16 6 C -0.05 -0.82 0.54 -52.13 -0.03 -0.84 16 7 C -0.16 -2.59 6.85 71.98 0.49 -2.10 16 8 C -0.13 -2.43 7.68 71.98 0.55 -1.88 16 9 C 0.10 1.62 1.32 44.94 0.06 1.68 16 10 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 11 C 0.14 3.34 4.64 86.38 0.40 3.74 16 12 N -0.73 -18.60 3.48 -478.54 -1.66 -20.27 16 13 C 0.71 25.55 8.49 179.05 1.52 27.07 16 14 O -0.64 -28.53 16.66 -3.97 -0.07 -28.60 16 15 N -0.63 -22.36 3.33 -829.33 -2.76 -25.12 16 16 C 0.11 3.05 6.57 86.93 0.57 3.62 16 17 C -0.12 -4.27 5.91 32.06 0.19 -4.08 16 18 C 0.22 9.40 0.69 -10.35 -0.01 9.39 16 19 O -0.56 -22.48 9.00 -148.98 -1.34 -23.82 16 20 C -0.55 -29.59 8.75 25.60 0.22 -29.36 16 21 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 22 C 0.02 1.32 5.46 84.65 0.46 1.78 16 23 N -0.94 -56.33 13.96 21.45 0.30 -56.04 16 24 Si 1.01 45.50 24.63 68.60 1.69 47.19 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.34 -15.78 7.11 99.48 0.71 -15.08 16 27 H -0.25 -10.34 5.28 99.48 0.53 -9.81 16 28 C 0.12 5.10 6.22 86.73 0.54 5.64 16 29 H 0.03 0.40 8.12 -2.39 -0.02 0.38 16 30 H 0.08 0.95 7.97 -2.39 -0.02 0.93 16 31 H 0.06 1.08 6.43 -2.39 -0.02 1.07 16 32 H 0.09 0.83 8.01 -2.38 -0.02 0.81 16 33 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.83 6.58 -2.39 -0.02 0.82 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.05 1.16 5.78 -2.39 -0.01 1.15 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.86 7.39 -2.39 -0.02 0.84 16 41 H 0.07 1.26 6.01 -2.39 -0.01 1.25 16 42 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.03 0.80 6.24 -2.38 -0.01 0.78 16 44 H 0.06 1.76 5.97 -2.39 -0.01 1.74 16 45 H 0.06 1.43 5.98 -2.38 -0.01 1.42 16 46 H 0.41 8.35 4.26 -92.71 -0.39 7.96 16 47 H 0.10 2.06 7.30 -2.39 -0.02 2.04 16 48 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.09 3.13 6.28 -2.38 -0.01 3.12 16 50 H 0.08 2.94 8.04 -2.39 -0.02 2.92 16 51 H 0.38 14.17 8.65 -74.06 -0.64 13.53 16 52 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 53 H 0.04 2.05 7.65 -2.39 -0.02 2.03 16 54 H 0.05 2.26 8.07 -2.39 -0.02 2.24 16 Total: -1.00 -70.09 388.56 -0.86 -70.96 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.31 Total: 32.64 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.91 Total: 15.01 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -7.74 Total: -113.37 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -1.41 Total: -52.42 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.69 Total: 47.19 kcal Total: -70.09 -0.86 -70.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017849.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.412 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds