Wall clock time and date at job start Tue Mar 31 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48497 * 109.47105 * 240.00098 * 3 2 1 5 5 H 1.48497 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47130 * 119.99949 * 3 2 1 7 7 C 1.38821 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 163.07367 * 7 2 1 9 9 N 1.36936 * 119.99848 * 343.06835 * 7 2 1 10 10 C 1.46930 * 120.63039 * 331.83856 * 9 7 2 11 11 C 1.53192 * 108.77738 * 233.62840 * 10 9 7 12 12 C 1.53044 * 109.31114 * 305.37016 * 11 10 9 13 13 N 1.46499 * 109.45895 * 181.38586 * 12 11 10 14 14 C 1.34777 * 119.99916 * 154.96947 * 13 12 11 15 15 O 1.21583 * 120.00252 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99721 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00017 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47455 * 180.02562 * 17 16 14 19 19 O 1.42897 * 108.87512 * 64.99607 * 18 17 16 20 20 C 1.54245 * 108.89428 * 306.39499 * 18 17 16 21 21 C 1.50554 * 108.48527 * 159.17968 * 20 18 17 22 22 C 1.54060 * 112.41874 * 94.26677 * 21 20 18 23 23 C 1.54073 * 112.81730 * 318.28066 * 22 21 20 24 24 C 1.50473 * 112.49216 * 318.28869 * 23 22 21 25 25 C 1.45540 * 108.90038 * 183.60671 * 18 17 16 26 26 C 1.53035 * 109.53126 * 61.36678 * 12 11 10 27 27 C 1.46927 * 120.63076 * 151.85755 * 9 7 2 28 28 H 0.96993 * 120.00045 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58695 * 113.84475 * 10 9 7 30 30 H 1.09000 * 109.70603 * 353.48926 * 10 9 7 31 31 H 1.08996 * 109.49867 * 185.41738 * 11 10 9 32 32 H 1.08998 * 109.52211 * 65.32962 * 11 10 9 33 33 H 1.09002 * 109.45565 * 301.35279 * 12 11 10 34 34 H 0.97002 * 120.00154 * 335.24303 * 13 12 11 35 35 H 0.96996 * 120.00087 * 0.02562 * 16 14 13 36 36 H 1.08997 * 109.47139 * 300.00087 * 17 16 14 37 37 H 1.09005 * 109.47418 * 59.99767 * 17 16 14 38 38 H 0.96698 * 114.00368 * 300.00636 * 19 18 17 39 39 H 1.08999 * 109.62723 * 278.97264 * 20 18 17 40 40 H 1.08999 * 109.62904 * 39.54915 * 20 18 17 41 41 H 1.09003 * 108.91817 * 333.50837 * 21 20 18 42 42 H 1.09004 * 108.91503 * 215.02053 * 21 20 18 43 43 H 1.08992 * 108.81670 * 197.42128 * 22 21 20 44 44 H 1.09006 * 108.72718 * 79.07715 * 22 21 20 45 45 H 1.08993 * 108.87689 * 197.50801 * 23 22 21 46 46 H 1.09001 * 108.87528 * 79.05862 * 23 22 21 47 47 H 1.09001 * 109.63193 * 334.43739 * 24 23 22 48 48 H 1.09001 * 109.62666 * 213.86542 * 24 23 22 49 49 H 1.09001 * 108.89291 * 303.44181 * 25 18 17 50 50 H 1.09006 * 108.89482 * 62.02356 * 25 18 17 51 51 H 1.09001 * 109.49578 * 58.58268 * 26 12 11 52 52 H 1.09000 * 109.50173 * 178.67722 * 26 12 11 53 53 H 1.08997 * 109.59021 * 246.15913 * 27 9 7 54 54 H 1.08997 * 109.58368 * 6.44740 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2224 -0.2728 9 7 1.3701 -2.3626 0.3443 10 6 0.2263 -2.3409 1.2663 11 6 0.4982 -3.3202 2.4125 12 6 0.8133 -4.7016 1.8340 13 7 1.0414 -5.6486 2.9282 14 6 0.8380 -6.9664 2.7324 15 8 0.4647 -7.3693 1.6477 16 7 1.0484 -7.8376 3.7390 17 6 0.8278 -9.2701 3.5260 18 6 1.1358 -10.0311 4.8171 19 8 0.1943 -9.6417 5.8190 20 6 2.5545 -9.6556 5.2919 21 6 2.6650 -9.9691 6.7603 22 6 3.2598 -11.3664 7.0196 23 6 2.7067 -12.4385 6.0612 24 6 1.2248 -12.3021 5.8385 25 6 0.9959 -11.4582 4.5680 26 6 2.0685 -4.6172 0.9627 27 6 1.8142 -3.6529 -0.2002 28 1 -0.4850 0.8400 0.0004 29 1 -0.6768 -2.6418 0.7352 30 1 0.0965 -1.3358 1.6674 31 1 -0.3822 -3.3857 3.0517 32 1 1.3477 -2.9687 2.9981 33 1 -0.0268 -5.0419 1.2285 34 1 1.3351 -5.3267 3.7949 35 1 1.3458 -7.5161 4.6045 36 1 -0.2112 -9.4398 3.2438 37 1 1.4829 -9.6243 2.7300 38 1 0.2095 -8.6976 6.0274 39 1 3.2919 -10.2344 4.7358 40 1 2.7243 -8.5909 5.1320 41 1 1.6723 -9.9198 7.2079 42 1 3.3010 -9.2215 7.2344 43 1 3.0331 -11.6604 8.0444 44 1 4.3421 -11.3135 6.9009 45 1 2.9114 -13.4242 6.4789 46 1 3.2170 -12.3511 5.1020 47 1 0.7700 -11.8049 6.6952 48 1 0.7820 -13.2894 5.7071 49 1 -0.0078 -11.6538 4.1904 50 1 1.7216 -11.7573 3.8116 51 1 2.9033 -4.2531 1.5616 52 1 2.3060 -5.6059 0.5698 53 1 1.0407 -4.0607 -0.8509 54 1 2.7335 -3.5125 -0.7689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609810708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:28 Heat of formation + Delta-G solvation = -96.525308 kcal Electronic energy + Delta-G solvation = -30747.139481 eV Core-core repulsion = 26717.710233 eV Total energy + Delta-G solvation = -4029.429248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.65383 -40.67951 -39.04496 -36.74551 -35.98150 -35.27192 -33.90047 -33.29186 -32.26244 -31.69157 -30.99683 -27.97113 -26.73102 -25.76607 -24.27576 -23.87587 -23.35760 -21.86931 -21.21864 -21.05113 -20.10761 -19.59046 -18.70707 -17.70703 -17.51397 -16.85671 -16.73331 -16.51787 -16.02706 -15.75509 -15.62926 -15.35489 -15.23641 -15.09043 -14.76795 -14.57131 -14.38050 -14.25304 -14.03215 -13.85606 -13.70339 -13.20990 -13.06732 -12.99036 -12.76100 -12.57108 -12.53789 -12.31155 -12.23274 -12.03012 -12.01251 -11.86521 -11.56608 -11.51689 -11.41219 -11.32136 -11.25571 -11.18967 -11.06928 -10.74922 -10.54649 -10.33648 -9.75381 -8.70377 -7.87119 -5.32938 1.49474 1.51002 1.58393 1.66210 2.16830 2.52697 3.17796 3.28031 3.34463 3.52962 3.67143 3.70162 3.85482 3.91092 4.07390 4.15511 4.21003 4.29594 4.35312 4.39995 4.43585 4.47054 4.56755 4.60446 4.65886 4.73209 4.82558 4.86666 4.87996 4.97248 5.02972 5.03214 5.07308 5.12785 5.16849 5.24438 5.29942 5.30740 5.34368 5.38189 5.39190 5.46070 5.48328 5.55968 5.60298 5.65110 5.67406 5.70868 5.99756 6.39541 6.75176 7.10971 7.14993 7.60591 7.84469 8.37701 9.19887 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028809 B = 0.001937 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.698189 B =14454.824608 C =14704.601256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.725 5.725 14 C 0.700 3.300 15 O -0.637 6.637 16 N -0.729 5.729 17 C 0.113 3.887 18 C 0.148 3.852 19 O -0.557 6.557 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.106 4.106 25 C -0.116 4.116 26 C -0.122 4.122 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.007 1.007 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.410 0.590 35 H 0.409 0.591 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.382 0.618 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.067 0.933 52 H 0.057 0.943 53 H 0.005 0.995 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 -23.706 18.446 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.166 4.166 12 C 0.076 3.924 13 N -0.379 5.379 14 C 0.399 3.601 15 O -0.518 6.518 16 N -0.387 5.387 17 C -0.012 4.012 18 C 0.107 3.893 19 O -0.365 6.365 20 C -0.179 4.179 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.086 0.914 52 H 0.075 0.925 53 H 0.023 0.977 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.253 -24.584 17.443 30.598 hybrid contribution 0.390 1.900 0.072 1.941 sum 5.643 -22.684 17.516 29.209 Atomic orbital electron populations 1.70177 1.06694 1.26033 1.55244 1.25839 0.96064 1.01584 1.01115 0.85306 0.77509 0.79013 0.78384 1.20349 1.22110 1.20056 1.19483 0.92869 0.85814 1.41237 0.91484 1.44342 1.35948 1.02171 1.50748 1.20573 0.87688 0.97798 0.88786 1.22249 1.01992 0.93530 0.98879 1.20476 0.96859 0.87750 0.87332 1.45099 1.72676 1.04221 1.15933 1.16151 0.78170 0.81620 0.84118 1.90909 1.55380 1.78779 1.26740 1.44918 1.73520 1.06380 1.13930 1.22037 1.01212 0.78949 0.99020 1.20039 0.89316 0.94867 0.85089 1.86642 1.60566 1.30639 1.58606 1.22031 0.95942 1.02149 0.97818 1.21329 1.02727 0.96729 0.95446 1.21895 0.99803 0.94436 0.99249 1.21379 0.95669 0.98789 0.99962 1.21149 0.96523 0.99273 0.97437 1.20499 1.03033 0.92398 0.99403 1.22171 0.97947 0.98424 0.97739 1.20967 0.97296 0.86011 0.93930 0.94007 0.98872 0.91765 0.90492 0.90976 0.92850 0.75353 0.75281 0.92632 0.91692 0.76893 0.90510 0.90762 0.90283 0.91794 0.92333 0.92398 0.91957 0.92123 0.91271 0.91582 0.91831 0.89752 0.91447 0.92477 0.97677 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.18 11.19 21.65 0.24 -54.93 16 2 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 3 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.26 -14.48 9.58 84.04 0.81 -13.67 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.61 -30.80 2.99 -699.08 -2.09 -32.89 16 10 C 0.18 8.49 5.30 86.36 0.46 8.94 16 11 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 12 C 0.18 6.15 2.42 45.02 0.11 6.26 16 13 N -0.72 -18.33 5.08 -457.69 -2.33 -20.66 16 14 C 0.70 19.35 8.53 179.05 1.53 20.88 16 15 O -0.64 -24.41 16.01 -3.98 -0.06 -24.48 16 16 N -0.73 -12.80 4.80 -478.55 -2.30 -15.09 16 17 C 0.11 2.00 4.71 86.38 0.41 2.40 16 18 C 0.15 1.81 0.62 -12.65 -0.01 1.80 16 19 O -0.56 -7.04 9.98 -148.98 -1.49 -8.53 16 20 C -0.14 -1.40 4.70 30.22 0.14 -1.25 16 21 C -0.13 -1.16 5.25 30.16 0.16 -1.00 16 22 C -0.12 -1.11 5.85 31.32 0.18 -0.92 16 23 C -0.12 -1.18 5.31 30.14 0.16 -1.02 16 24 C -0.11 -1.20 5.57 30.19 0.17 -1.03 16 25 C -0.12 -1.44 4.12 28.73 0.12 -1.32 16 26 C -0.12 -4.40 5.65 30.67 0.17 -4.22 16 27 C 0.14 6.31 6.52 86.36 0.56 6.88 16 28 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.06 3.41 6.06 -2.39 -0.01 3.40 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 34 H 0.41 7.31 8.61 -92.71 -0.80 6.51 16 35 H 0.41 4.22 6.32 -92.71 -0.59 3.63 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.38 2.93 8.12 -74.06 -0.60 2.33 16 39 H 0.08 0.82 6.97 -2.39 -0.02 0.80 16 40 H 0.07 0.65 6.06 -2.39 -0.01 0.64 16 41 H 0.08 0.82 5.46 -2.39 -0.01 0.81 16 42 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 46 H 0.06 0.59 6.62 -2.39 -0.02 0.57 16 47 H 0.07 0.92 6.24 -2.39 -0.01 0.91 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 50 H 0.08 0.93 7.46 -2.38 -0.02 0.92 16 51 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 54 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 Total: -1.00 -71.33 399.16 -1.52 -72.85 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -1.07 Total: 21.28 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 5.55 Total: 16.06 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -6.47 Total: -123.57 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.55 Total: -33.00 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.33 -1.52 -72.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609810708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.679 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds