Wall clock time and date at job start Tue Mar 31 2020 22:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 C 1.50699 * 109.47237 * 240.00347 * 2 1 3 5 5 H 1.08001 * 119.99992 * 239.99959 * 4 2 1 6 6 C 1.37884 * 120.00109 * 59.99647 * 4 2 1 7 7 N 1.31515 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99727 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47286 * 60.00690 * 8 6 4 10 10 H 1.48510 * 109.46794 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47151 * 299.99793 * 8 6 4 12 12 C 1.53001 * 109.47029 * 120.00225 * 2 1 3 13 13 N 1.46497 * 109.46898 * 300.00295 * 12 2 1 14 14 C 1.34780 * 119.99909 * 180.02562 * 13 12 2 15 15 O 1.21345 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.49448 * 120.00064 * 179.97438 * 14 13 12 17 17 O 1.21353 * 120.00159 * 359.97438 * 16 14 13 18 18 N 1.34780 * 120.00064 * 180.02562 * 16 14 13 19 19 C 1.46494 * 120.00120 * 179.97438 * 18 16 14 20 20 H 1.08999 * 109.03188 * 323.95141 * 19 18 16 21 21 C 1.45879 * 109.03893 * 82.83428 * 19 18 16 22 22 C 1.53981 * 112.66511 * 182.05839 * 21 19 18 23 23 N 1.44301 * 108.31404 * 278.59449 * 22 21 19 24 24 C 1.47940 * 113.64498 * 95.40261 * 23 22 21 25 25 C 1.53913 * 113.32892 * 318.13418 * 24 23 22 26 26 C 1.53001 * 108.78866 * 78.65218 * 25 24 23 27 27 C 1.53009 * 108.78970 * 196.97489 * 25 24 23 28 28 C 1.50540 * 112.94553 * 317.75568 * 25 24 23 29 29 H 1.08990 * 109.47511 * 299.99741 * 1 2 3 30 30 H 1.09005 * 109.47083 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46979 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47504 * 300.00243 * 3 2 1 34 34 H 1.09003 * 109.47092 * 59.99979 * 3 2 1 35 35 H 0.97001 * 119.99797 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.46858 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47028 * 60.00303 * 12 2 1 38 38 H 0.97005 * 120.00227 * 359.97438 * 13 12 2 39 39 H 0.97004 * 119.99282 * 359.97438 * 18 16 14 40 40 H 1.08996 * 108.84582 * 302.88035 * 21 19 18 41 41 H 1.09005 * 108.84346 * 61.34447 * 21 19 18 42 42 H 1.09002 * 109.69259 * 158.88931 * 22 21 19 43 43 H 1.08994 * 109.69707 * 38.30077 * 22 21 19 44 44 H 1.00896 * 111.00322 * 329.44293 * 23 22 21 45 45 H 1.08999 * 108.71525 * 79.13684 * 24 23 22 46 46 H 1.09007 * 108.70645 * 197.14688 * 24 23 22 47 47 H 1.09004 * 109.47059 * 43.53270 * 26 25 24 48 48 H 1.08994 * 109.47483 * 163.53188 * 26 25 24 49 49 H 1.08996 * 109.46709 * 283.53184 * 26 25 24 50 50 H 1.08999 * 109.46860 * 60.00507 * 27 25 24 51 51 H 1.08999 * 109.46893 * 179.97438 * 27 25 24 52 52 H 1.09000 * 109.47422 * 300.00603 * 27 25 24 53 53 H 1.08995 * 109.57404 * 211.56464 * 28 25 24 54 54 H 1.08997 * 109.56486 * 331.93499 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0079 10 1 1.8270 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8776 -0.4910 3.6695 15 8 2.5752 -1.4775 3.7808 16 6 1.3798 0.2138 4.8897 17 8 0.6825 1.2007 4.7784 18 7 1.7062 -0.2461 6.1139 19 6 1.2188 0.4450 7.3100 20 1 1.2026 1.5180 7.1188 21 6 -0.1379 -0.0057 7.6004 22 6 -0.7526 0.7085 8.8182 23 7 -0.2671 0.0639 10.0146 24 6 0.9132 0.7285 10.6094 25 6 1.9490 1.1808 9.5646 26 6 1.4614 2.4784 8.9169 27 6 3.2772 1.4538 10.2736 28 6 2.1796 0.1570 8.4854 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 0.7095 1.1619 -3.4844 36 1 3.1299 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2491 38 1 0.9942 0.7581 2.3564 39 1 2.2639 -1.0348 6.2028 40 1 -0.7652 0.1815 6.7289 41 1 -0.1184 -1.0779 7.7958 42 1 -1.8394 0.6357 8.7769 43 1 -0.4539 1.7567 8.8187 44 1 -0.0863 -0.9149 9.8500 45 1 0.5778 1.6011 11.1699 46 1 1.3933 0.0356 11.3005 47 1 1.0726 3.1450 9.6868 48 1 2.2918 2.9623 8.4029 49 1 0.6724 2.2522 8.1998 50 1 3.6209 0.5433 10.7643 51 1 4.0197 1.7748 9.5430 52 1 3.1372 2.2373 11.0183 53 1 3.2107 0.2188 8.1377 54 1 1.9847 -0.8400 8.8805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332251721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:44 Heat of formation + Delta-G solvation = -76.217801 kcal Electronic energy + Delta-G solvation = -30964.782426 eV Core-core repulsion = 26936.233778 eV Total energy + Delta-G solvation = -4028.548648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.22077 -41.14570 -39.56152 -38.21249 -36.41744 -35.36599 -35.01685 -32.76446 -32.45893 -29.24859 -28.27186 -27.93327 -27.60723 -27.23287 -26.29807 -25.20534 -23.66407 -21.89866 -21.48879 -20.74459 -20.04654 -19.10267 -18.24349 -17.84362 -17.20742 -17.13264 -16.82309 -16.62624 -16.43320 -16.08249 -15.85069 -15.40542 -15.08849 -14.78107 -14.51529 -14.45424 -14.28834 -14.12270 -14.05737 -13.86182 -13.47319 -13.22692 -13.13901 -12.95923 -12.94190 -12.83074 -12.69685 -12.62967 -12.37439 -12.29024 -12.14985 -12.13073 -11.87141 -11.69454 -11.52455 -11.42809 -11.31794 -10.93153 -10.78470 -10.64320 -10.41949 -10.35772 -10.14448 -9.18120 -8.02287 -6.18933 0.32798 1.32086 1.45537 1.46824 1.53328 2.12743 2.44469 2.66933 3.21474 3.38366 3.40083 3.45669 3.72525 3.85700 3.92241 4.16254 4.17021 4.32158 4.32594 4.45057 4.45924 4.53043 4.57421 4.65794 4.66410 4.78680 4.85304 4.90289 4.93532 5.01630 5.01847 5.03755 5.05346 5.07676 5.10903 5.15098 5.18429 5.19603 5.24271 5.37824 5.38703 5.46105 5.47160 5.62940 5.66295 5.92968 6.09451 6.17247 6.24125 6.37429 6.40152 6.54279 6.72437 6.85132 6.94642 7.48966 8.96811 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.002052 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.948526 B =13642.340324 C =13786.931182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.143 3.857 13 N -0.681 5.681 14 C 0.496 3.504 15 O -0.552 6.552 16 C 0.514 3.486 17 O -0.540 6.540 18 N -0.686 5.686 19 C 0.128 3.872 20 H 0.097 0.903 21 C -0.164 4.164 22 C 0.056 3.944 23 N -0.694 5.694 24 C 0.073 3.927 25 C -0.086 4.086 26 C -0.176 4.176 27 C -0.137 4.137 28 C -0.110 4.110 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.413 0.587 39 H 0.417 0.583 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.346 0.654 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.051 0.949 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.052 0.948 52 H 0.063 0.937 53 H 0.078 0.922 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 1.018 27.873 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.276 3.724 15 O -0.431 6.431 16 C 0.294 3.706 17 O -0.418 6.418 18 N -0.338 5.338 19 C 0.026 3.974 20 H 0.115 0.885 21 C -0.204 4.204 22 C -0.074 4.074 23 N -0.324 5.324 24 C -0.056 4.056 25 C -0.088 4.088 26 C -0.232 4.232 27 C -0.195 4.195 28 C -0.148 4.148 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.251 0.749 39 H 0.254 0.746 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.166 0.834 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.082 0.918 53 H 0.097 0.903 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.129 1.483 28.117 28.156 hybrid contribution 0.936 -0.711 -2.113 2.418 sum 1.065 0.772 26.004 26.037 Atomic orbital electron populations 1.21707 0.97370 0.98890 1.00205 1.18378 0.93129 0.92998 0.90508 1.21709 0.98219 0.98037 1.00211 1.21207 1.31868 1.12314 0.91138 0.93033 1.25509 0.95121 0.95590 1.01181 1.69918 1.36951 1.23350 1.23720 0.85762 0.78648 0.78765 0.79299 1.20088 1.21112 1.20088 1.21548 0.97905 0.95484 0.83036 1.46078 1.50743 1.31427 1.05049 1.20404 0.81686 0.84927 0.85353 1.90708 1.38544 1.26718 1.87112 1.20006 0.81066 0.84342 0.85189 1.90746 1.37757 1.26256 1.87006 1.45988 1.51767 1.31922 1.04166 1.20686 0.94325 0.98763 0.83605 0.88526 1.21603 0.96119 1.01818 1.00845 1.22077 0.99524 0.99895 0.85897 1.59574 1.34651 1.07108 1.31044 1.22518 0.88088 0.99877 0.95145 1.20779 0.97412 0.95064 0.95570 1.22786 1.01706 0.97226 1.01488 1.21915 0.94906 1.02311 1.00396 1.21727 0.99124 1.00478 0.93435 0.95210 0.91758 0.95777 0.95761 0.91746 0.95213 0.93027 0.92740 0.92757 0.74936 0.74621 0.92968 0.90796 0.90818 0.88783 0.83410 0.90971 0.90051 0.91603 0.93040 0.90469 0.91612 0.92937 0.91815 0.90296 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 4 C -0.53 -27.41 8.01 25.60 0.21 -27.21 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.35 5.15 84.66 0.44 1.79 16 7 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 8 Si 0.95 42.22 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 C 0.14 5.96 4.50 86.38 0.39 6.35 16 13 N -0.68 -24.83 4.95 -464.43 -2.30 -27.13 16 14 C 0.50 16.91 7.89 87.27 0.69 17.60 16 15 O -0.55 -20.54 16.48 -3.23 -0.05 -20.59 16 16 C 0.51 14.96 7.69 87.27 0.67 15.63 16 17 O -0.54 -17.77 15.82 -3.26 -0.05 -17.82 16 18 N -0.69 -14.69 5.02 -451.88 -2.27 -16.96 16 19 C 0.13 2.18 1.89 43.33 0.08 2.26 16 20 H 0.10 1.95 4.42 -2.39 -0.01 1.94 16 21 C -0.16 -2.68 4.71 28.74 0.14 -2.55 16 22 C 0.06 0.78 6.23 87.12 0.54 1.32 16 23 N -0.69 -8.00 6.54 -513.92 -3.36 -11.37 16 24 C 0.07 0.68 5.44 86.41 0.47 1.15 16 25 C -0.09 -0.86 0.71 -52.67 -0.04 -0.90 16 26 C -0.18 -2.21 6.39 71.98 0.46 -1.75 16 27 C -0.14 -1.17 8.02 71.99 0.58 -0.59 16 28 C -0.11 -1.27 4.44 30.31 0.13 -1.13 16 29 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 30 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 34 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 35 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 36 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.41 14.74 5.64 -92.70 -0.52 14.22 16 39 H 0.42 7.96 8.06 -92.71 -0.75 7.22 16 40 H 0.05 1.13 7.67 -2.39 -0.02 1.12 16 41 H 0.07 1.09 7.50 -2.38 -0.02 1.07 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.32 4.09 -2.39 -0.01 1.31 16 44 H 0.35 3.48 7.57 -89.70 -0.68 2.80 16 45 H 0.07 0.72 7.71 -2.39 -0.02 0.70 16 46 H 0.08 0.59 7.95 -2.38 -0.02 0.57 16 47 H 0.07 0.73 7.73 -2.38 -0.02 0.71 16 48 H 0.05 0.72 8.04 -2.39 -0.02 0.70 16 49 H 0.08 1.16 2.80 -2.39 -0.01 1.15 16 50 H 0.06 0.45 8.11 -2.39 -0.02 0.44 16 51 H 0.05 0.52 7.98 -2.39 -0.02 0.50 16 52 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.08 0.95 7.63 -2.39 -0.02 0.94 16 54 H 0.08 0.77 7.44 -2.39 -0.02 0.75 16 Total: -1.00 -58.72 397.85 -0.93 -59.65 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -1.01 Total: 33.99 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.89 Total: 4.14 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -7.73 Total: -103.61 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.10 Total: -38.41 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -58.72 -0.93 -59.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332251721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.567 kcal (2) G-P(sol) polarization free energy of solvation -58.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds