Wall clock time and date at job start Tue Mar 31 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46986 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.46941 * 55.00521 * 12 11 10 14 14 N 1.46897 * 109.47200 * 294.99799 * 12 11 10 15 15 C 1.50703 * 109.46520 * 175.00094 * 12 11 10 16 16 O 1.21285 * 119.99926 * 100.00641 * 15 12 11 17 17 N 1.34775 * 120.00012 * 279.99669 * 15 12 11 18 18 C 1.48194 * 126.42237 * 359.69443 * 17 15 12 19 19 C 1.55386 * 106.99749 * 174.81374 * 18 17 15 20 20 C 1.53573 * 101.87892 * 337.90057 * 19 18 17 21 21 H 1.09000 * 111.38142 * 281.41455 * 20 19 18 22 22 C 1.45453 * 126.41997 * 180.02562 * 17 15 12 23 23 H 1.08998 * 109.53008 * 94.47615 * 22 17 15 24 24 C 1.51625 * 117.43828 * 328.75561 * 22 17 15 25 25 C 1.53885 * 106.97350 * 181.14114 * 24 22 17 26 26 C 1.52595 * 111.19582 * 55.00883 * 25 24 22 27 27 N 1.45628 * 115.87218 * 153.53465 * 20 19 18 28 28 C 1.46901 * 111.00152 * 60.33153 * 27 20 19 29 29 C 1.52998 * 109.47095 * 187.06891 * 28 27 20 30 30 O 1.42901 * 109.46982 * 65.00254 * 29 28 27 31 31 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 32 32 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 33 33 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 34 34 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 35 35 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 36 36 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 37 37 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 38 38 H 1.00900 * 110.99756 * 176.04283 * 14 12 11 39 39 H 1.00896 * 111.00524 * 300.00378 * 14 12 11 40 40 H 1.09004 * 109.92066 * 294.27518 * 18 17 15 41 41 H 1.09001 * 109.92392 * 55.59152 * 18 17 15 42 42 H 1.09001 * 111.08677 * 219.66973 * 19 18 17 43 43 H 1.08997 * 110.75872 * 95.98114 * 19 18 17 44 44 H 1.09000 * 109.95725 * 300.51537 * 24 22 17 45 45 H 1.09004 * 109.95267 * 61.77989 * 24 22 17 46 46 H 1.08999 * 109.13641 * 175.44924 * 25 24 22 47 47 H 1.09002 * 109.13643 * 294.62656 * 25 24 22 48 48 H 1.09006 * 109.02778 * 66.91704 * 26 25 24 49 49 H 1.09002 * 109.03258 * 185.75321 * 26 25 24 50 50 H 1.08995 * 109.47364 * 307.07279 * 28 27 20 51 51 H 1.09002 * 109.47067 * 67.07021 * 28 27 20 52 52 H 1.09002 * 109.47538 * 184.99793 * 29 28 27 53 53 H 1.09004 * 109.47250 * 305.00279 * 29 28 27 54 54 H 0.96693 * 114.00238 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 6 2.4745 -6.1500 0.0288 13 1 3.1585 -6.0390 0.8701 14 7 3.2376 -6.1480 -1.2264 15 6 1.7250 -7.4509 0.1590 16 8 1.5128 -8.1295 -0.8237 17 7 1.2907 -7.8604 1.3673 18 6 1.4756 -7.1514 2.6554 19 6 0.6876 -7.9499 3.7306 20 6 -0.3300 -8.7161 2.8727 21 1 -1.1600 -8.0758 2.5741 22 6 0.5584 -9.0844 1.6525 23 1 1.2571 -9.8656 1.9521 24 6 -0.3626 -9.6155 0.5715 25 6 -1.0282 -10.8847 1.1320 26 6 -1.7284 -10.6009 2.4578 27 7 -0.8181 -9.9686 3.4328 28 6 -1.4954 -9.7427 4.7166 29 6 -1.8370 -11.0896 5.3569 30 8 -0.6300 -11.7818 5.6829 31 1 -0.4850 0.8401 -0.0041 32 1 0.6241 -2.5528 0.9015 33 1 0.6247 -2.5609 -0.8785 34 1 2.8719 -3.6083 -0.8736 35 1 2.8719 -3.6004 0.9064 36 1 0.8539 -5.0406 0.9135 37 1 0.8533 -5.0490 -0.8665 38 1 3.9454 -6.8671 -1.2204 39 1 2.6255 -6.2497 -2.0220 40 1 2.5340 -7.1209 2.9140 41 1 1.0789 -6.1387 2.5823 42 1 0.1842 -7.2790 4.4267 43 1 1.3464 -8.6373 4.2612 44 1 -1.1225 -8.8718 0.3317 45 1 0.2136 -9.8608 -0.3207 46 1 -1.7603 -11.2517 0.4127 47 1 -0.2664 -11.6487 1.2877 48 1 -2.5734 -9.9362 2.2782 49 1 -2.0978 -11.5388 2.8726 50 1 -0.8381 -9.1811 5.3803 51 1 -2.4121 -9.1772 4.5492 52 1 -2.4171 -10.9238 6.2647 53 1 -2.4207 -11.6872 4.6567 54 1 -0.7707 -12.6460 6.0932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343474302.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:14 Heat of formation + Delta-G solvation = -116.373286 kcal Electronic energy + Delta-G solvation = -30973.239723 eV Core-core repulsion = 26942.949803 eV Total energy + Delta-G solvation = -4030.289921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97409 -40.21184 -38.04778 -37.14325 -36.77897 -35.26765 -34.63409 -33.12964 -32.21660 -30.15018 -29.52926 -29.34121 -26.91161 -25.29988 -24.82723 -23.59136 -22.49032 -22.34987 -21.70253 -21.06906 -19.88385 -18.45605 -18.33665 -18.20370 -17.35839 -17.14087 -16.84179 -16.47435 -16.43263 -16.03587 -15.73487 -15.50974 -15.30611 -14.95895 -14.85363 -14.53673 -14.48186 -14.30686 -14.18843 -13.84652 -13.62056 -13.42075 -13.17885 -13.11843 -12.96848 -12.86457 -12.58417 -12.46089 -12.35932 -12.28968 -12.14466 -11.90871 -11.84667 -11.69721 -11.49753 -11.39388 -11.25731 -11.12192 -10.87029 -10.75135 -10.52557 -9.72296 -9.69515 -9.39661 -8.17204 -6.27424 1.41191 1.41829 1.44998 1.55550 1.85528 2.43486 2.82254 3.15159 3.15934 3.45837 3.49431 3.56840 3.72636 3.80977 3.92329 3.96973 4.01906 4.12273 4.13274 4.24890 4.26785 4.29642 4.31312 4.46591 4.49209 4.54303 4.58331 4.64668 4.70386 4.72722 4.82774 4.83203 4.90856 4.94943 4.97929 4.98969 5.09750 5.11925 5.15001 5.22615 5.26005 5.33354 5.37124 5.60826 5.83464 5.93108 5.99232 6.02241 6.05232 6.30408 6.42510 6.45617 6.90350 7.02605 7.03464 7.41597 8.94859 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.002337 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.092416 B =11978.762465 C =13006.468838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.082 4.082 11 C -0.091 4.091 12 C 0.092 3.908 13 H 0.117 0.883 14 N -0.816 5.816 15 C 0.499 3.501 16 O -0.576 6.576 17 N -0.610 5.610 18 C 0.092 3.908 19 C -0.111 4.111 20 C 0.066 3.934 21 H 0.046 0.954 22 C 0.135 3.865 23 H 0.072 0.928 24 C -0.116 4.116 25 C -0.106 4.106 26 C 0.048 3.952 27 N -0.510 5.510 28 C 0.045 3.955 29 C 0.081 3.919 30 O -0.582 6.582 31 H 0.262 0.738 32 H -0.008 1.008 33 H -0.018 1.018 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.349 0.651 39 H 0.346 0.654 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.033 0.967 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.056 0.944 52 H 0.065 0.935 53 H 0.053 0.947 54 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -26.842 12.908 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.119 4.119 11 C -0.129 4.129 12 C -0.024 4.024 13 H 0.135 0.865 14 N -0.345 5.345 15 C 0.287 3.713 16 O -0.456 6.456 17 N -0.343 5.343 18 C -0.030 4.030 19 C -0.149 4.149 20 C -0.044 4.044 21 H 0.063 0.937 22 C 0.031 3.969 23 H 0.090 0.910 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.079 4.079 27 N -0.235 5.235 28 C -0.083 4.083 29 C 0.003 3.997 30 O -0.390 6.390 31 H 0.071 0.929 32 H 0.011 0.989 33 H 0.001 0.999 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.112 0.888 50 H 0.103 0.897 51 H 0.074 0.926 52 H 0.083 0.917 53 H 0.071 0.929 54 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.265 -26.108 12.364 28.976 hybrid contribution -1.399 0.132 -0.412 1.465 sum -3.665 -25.976 11.952 28.828 Atomic orbital electron populations 1.70113 1.07807 1.27557 1.52175 1.25999 0.95767 1.03383 0.94938 0.85413 0.79177 0.78845 0.77708 1.18504 1.20639 1.20239 1.21749 0.93572 0.92376 1.49772 0.92165 1.19042 0.94518 0.93472 0.94392 1.21272 0.97508 0.91880 1.01290 1.21421 0.96676 0.93434 1.01372 1.21561 0.95311 0.89567 0.95928 0.86482 1.59061 1.17507 1.54810 1.03107 1.22173 0.79096 0.88653 0.81363 1.90632 1.59272 1.58068 1.37645 1.48397 1.55046 1.23278 1.07566 1.22776 1.02251 0.96618 0.81329 1.22504 0.97137 0.98793 0.96439 1.22539 0.96180 0.90949 0.94721 0.93662 1.21386 0.93327 0.87081 0.95117 0.91022 1.21568 0.97818 0.97878 0.98122 1.21542 1.00365 0.96474 0.96057 1.22272 0.93476 1.00100 0.92064 1.62524 1.36883 1.20923 1.03162 1.22308 0.98270 0.97172 0.90548 1.22225 0.86513 0.92434 0.98486 1.86554 1.31867 1.36624 1.83924 0.92904 0.98923 0.99913 0.92510 0.92517 0.91341 0.93779 0.83776 0.84079 0.88860 0.90370 0.88283 0.88871 0.93582 0.91944 0.89802 0.91199 0.94913 0.88772 0.89703 0.92570 0.91676 0.92936 0.76091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.08 -3.37 5.04 30.59 0.15 -3.22 16 11 C -0.09 -3.10 4.84 30.60 0.15 -2.95 16 12 C 0.09 2.59 2.60 44.17 0.11 2.70 16 13 H 0.12 2.87 7.71 -2.39 -0.02 2.85 16 14 N -0.82 -22.93 8.44 -171.81 -1.45 -24.38 16 15 C 0.50 14.58 7.01 87.66 0.61 15.20 16 16 O -0.58 -20.03 14.47 -3.04 -0.04 -20.07 16 17 N -0.61 -14.92 3.28 -789.24 -2.59 -17.51 16 18 C 0.09 1.73 6.32 86.87 0.55 2.28 16 19 C -0.11 -1.73 5.64 31.61 0.18 -1.55 16 20 C 0.07 1.24 2.14 46.16 0.10 1.34 16 21 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16 22 C 0.14 3.11 2.64 45.55 0.12 3.23 16 23 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 24 C -0.12 -2.77 5.03 30.44 0.15 -2.61 16 25 C -0.11 -1.83 5.99 30.76 0.18 -1.65 16 26 C 0.05 0.72 5.15 86.03 0.44 1.17 16 27 N -0.51 -8.37 4.65 -867.06 -4.03 -12.40 16 28 C 0.04 0.57 5.21 86.30 0.45 1.02 16 29 C 0.08 0.80 7.10 71.98 0.51 1.31 16 30 O -0.58 -7.54 13.61 -148.98 -2.03 -9.57 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 34 H 0.06 2.42 7.75 -2.39 -0.02 2.40 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.23 6.66 -2.39 -0.02 2.21 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.35 8.45 9.06 -89.69 -0.81 7.63 16 39 H 0.35 10.31 8.58 -89.70 -0.77 9.54 16 40 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.08 1.55 6.68 -2.39 -0.02 1.54 16 42 H 0.10 1.26 8.13 -2.39 -0.02 1.24 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 45 H 0.06 1.80 6.67 -2.38 -0.02 1.78 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.03 0.50 8.11 -2.38 -0.02 0.48 16 49 H 0.09 1.11 6.25 -2.39 -0.01 1.10 16 50 H 0.08 1.14 7.20 -2.39 -0.02 1.12 16 51 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 52 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 53 H 0.05 0.43 6.28 -2.38 -0.01 0.42 16 54 H 0.39 1.68 9.12 -74.06 -0.68 1.00 16 Total: -1.00 -74.06 412.82 -4.62 -78.68 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -1.35 Total: 28.81 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.56 Total: -12.93 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -7.78 Total: -111.81 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -2.07 Total: -29.65 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -74.06 -4.62 -78.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343474302.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.695 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds