Wall clock time and date at job start Tue Mar 31 2020 23:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46842 * 110.99962 * 2 1 4 4 C 1.53040 * 109.52319 * 185.84347 * 3 2 1 5 5 C 1.53119 * 109.27635 * 300.81975 * 4 3 2 6 6 O 1.42907 * 109.52305 * 177.56306 * 5 4 3 7 7 C 1.42894 * 113.99913 * 149.99738 * 6 5 4 8 8 C 1.50705 * 109.47014 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99730 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00375 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00324 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.77630 * 36.78775 * 11 10 8 13 13 C 1.54321 * 110.72476 * 273.54921 * 11 10 8 14 14 N 1.47019 * 107.27014 * 263.83012 * 13 11 10 15 15 C 1.36938 * 125.64450 * 181.02032 * 14 13 11 16 16 H 1.08001 * 119.99827 * 185.22843 * 15 14 13 17 17 C 1.38812 * 120.00245 * 5.23408 * 15 14 13 18 18 N 1.31609 * 119.99932 * 352.94926 * 17 15 14 19 19 Si 1.86805 * 119.99958 * 173.22565 * 17 15 14 20 20 H 1.48505 * 109.46599 * 274.73230 * 19 17 15 21 21 H 1.48502 * 109.47243 * 34.72693 * 19 17 15 22 22 H 1.48490 * 109.47253 * 154.73321 * 19 17 15 23 23 C 1.47425 * 108.70635 * 1.28580 * 14 13 11 24 24 C 1.55135 * 104.71897 * 335.55370 * 23 14 13 25 25 C 1.53005 * 111.19354 * 279.19261 * 24 23 14 26 26 C 1.52995 * 110.90412 * 155.27559 * 24 23 14 27 27 C 1.53112 * 109.16174 * 57.65604 * 5 4 3 28 28 C 1.46844 * 111.00226 * 124.21320 * 2 1 3 29 29 H 1.08999 * 109.47338 * 60.00279 * 1 2 3 30 30 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46968 * 299.99692 * 1 2 3 32 32 H 1.09003 * 109.46420 * 65.82356 * 3 2 1 33 33 H 1.09003 * 109.46507 * 305.85419 * 3 2 1 34 34 H 1.09000 * 109.50090 * 180.88092 * 4 3 2 35 35 H 1.08994 * 109.50842 * 60.76530 * 4 3 2 36 36 H 1.09002 * 109.52266 * 297.68416 * 5 4 3 37 37 H 1.08997 * 109.47112 * 60.00397 * 7 6 5 38 38 H 1.08996 * 109.47362 * 299.99980 * 7 6 5 39 39 H 0.96998 * 119.99636 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.88102 * 144.40815 * 13 11 10 41 41 H 1.09000 * 110.01159 * 23.32027 * 13 11 10 42 42 H 0.96998 * 120.00147 * 180.02562 * 18 17 15 43 43 H 1.08988 * 110.36607 * 94.48214 * 23 14 13 44 44 H 1.08999 * 110.36784 * 216.81116 * 23 14 13 45 45 H 1.08993 * 109.46919 * 172.18762 * 25 24 23 46 46 H 1.09004 * 109.46839 * 292.19026 * 25 24 23 47 47 H 1.09002 * 109.47166 * 52.18139 * 25 24 23 48 48 H 1.08997 * 109.47469 * 307.97445 * 26 24 23 49 49 H 1.09000 * 109.47256 * 67.97964 * 26 24 23 50 50 H 1.08999 * 109.47206 * 187.97606 * 26 24 23 51 51 H 1.08999 * 109.50355 * 62.28849 * 27 5 4 52 52 H 1.08999 * 109.50371 * 182.40379 * 27 5 4 53 53 H 1.09005 * 109.46190 * 294.17252 * 28 2 1 54 54 H 1.08998 * 109.46718 * 54.14487 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1469 5 6 4.1188 0.5369 1.0142 6 8 5.5360 0.4510 0.8518 7 6 6.2579 0.3674 2.0822 8 6 7.7345 0.2809 1.7932 9 8 8.1296 0.2904 0.6466 10 7 8.6159 0.1929 2.8089 11 6 10.0512 0.1082 2.5281 12 1 10.3149 0.7289 1.6717 13 6 10.4761 -1.3565 2.2922 14 7 10.9970 -1.8706 3.5673 15 6 11.4961 -3.1285 3.7763 16 1 11.7776 -3.4393 4.7716 17 6 11.6404 -4.0042 2.7089 18 7 11.1709 -3.6794 1.5231 19 14 12.4941 -5.6471 2.9575 20 1 13.9617 -5.4684 2.8176 21 1 12.1857 -6.1649 4.3147 22 1 12.0137 -6.6138 1.9379 23 6 10.8870 -0.8098 4.5851 24 6 10.8796 0.5137 3.7758 25 6 12.2984 0.9286 3.3809 26 6 10.1825 1.6283 4.5584 27 6 3.5182 -0.8715 1.0207 28 6 1.9953 -0.7708 1.1337 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7324 1.8608 0.9376 33 1 1.5634 1.9257 -0.8330 34 1 3.9098 2.3512 -0.1311 35 1 3.7813 0.8568 -1.0907 36 1 3.8897 1.0360 1.9558 37 1 5.9425 -0.5213 2.6288 38 1 6.0563 1.2542 2.6828 39 1 8.2999 0.1848 3.7260 40 1 11.2540 -1.3986 1.5298 41 1 9.6164 -1.9481 1.9774 42 1 11.2714 -4.2914 0.7773 43 1 9.9598 -0.9184 5.1475 44 1 11.7449 -0.8383 5.2569 45 1 12.2522 1.7789 2.7007 46 1 12.8572 1.2077 4.2742 47 1 12.7966 0.0945 2.8867 48 1 9.2021 1.2832 4.8869 49 1 10.7844 1.8932 5.4276 50 1 10.0642 2.5025 3.9183 51 1 3.7814 -1.3836 0.0952 52 1 3.9100 -1.4303 1.8706 53 1 1.7325 -0.2709 2.0660 54 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675480923.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:05 Heat of formation + Delta-G solvation = -76.210106 kcal Electronic energy + Delta-G solvation = -30862.919279 eV Core-core repulsion = 26834.370964 eV Total energy + Delta-G solvation = -4028.548315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.29837 -40.39429 -39.41288 -37.93983 -35.69349 -34.49371 -33.50320 -32.61633 -31.90017 -30.41346 -28.81036 -27.88932 -27.36225 -26.84289 -25.01608 -24.16072 -23.43896 -22.38196 -21.47218 -20.88141 -20.15203 -18.68875 -18.31205 -17.92815 -17.11771 -17.00932 -16.77897 -16.36809 -16.05898 -15.73771 -15.63975 -15.50771 -15.38038 -15.07669 -14.78619 -14.31705 -14.17520 -13.93832 -13.80964 -13.72437 -13.41341 -13.40755 -13.13666 -13.03463 -12.94486 -12.83563 -12.70054 -12.58971 -12.55700 -12.19127 -12.13044 -12.11109 -11.89487 -11.85392 -11.74663 -11.50930 -11.47756 -11.29243 -10.84454 -10.68644 -10.51481 -9.98949 -9.28060 -8.88844 -7.84399 -5.20174 1.43029 1.46119 1.54041 1.62692 1.86727 2.48851 2.93169 3.00857 3.33722 3.49690 3.69066 3.75305 3.78653 3.86730 3.97038 4.08516 4.09731 4.11945 4.18537 4.28197 4.32653 4.35666 4.40735 4.53816 4.54714 4.56782 4.67765 4.71006 4.73659 4.85445 4.87075 4.90533 4.93648 4.97106 5.00850 5.04463 5.06685 5.14861 5.17887 5.20281 5.27452 5.32114 5.38162 5.46904 5.58439 5.72069 5.75347 6.10579 6.12891 6.16233 6.17889 6.63087 7.07784 7.32379 7.78387 8.43001 9.25100 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.002544 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.138895 B =11002.496917 C =12473.098349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.567 5.567 3 C 0.065 3.935 4 C -0.113 4.113 5 C 0.086 3.914 6 O -0.389 6.389 7 C 0.053 3.947 8 C 0.504 3.496 9 O -0.578 6.578 10 N -0.696 5.696 11 C 0.139 3.861 12 H 0.073 0.927 13 C 0.193 3.807 14 N -0.621 5.621 15 C -0.236 4.236 16 H 0.088 0.912 17 C -0.071 4.071 18 N -0.953 5.953 19 Si 0.976 3.024 20 H -0.285 1.285 21 H -0.264 1.264 22 H -0.301 1.301 23 C 0.138 3.862 24 C -0.073 4.073 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.142 4.142 28 C 0.064 3.936 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.412 0.588 40 H 0.003 0.997 41 H -0.005 1.005 42 H 0.243 0.757 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.027 0.973 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.053 0.947 52 H 0.074 0.926 53 H 0.049 0.951 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.541 15.419 7.038 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.293 5.293 3 C -0.063 4.063 4 C -0.151 4.151 5 C 0.028 3.972 6 O -0.307 6.307 7 C -0.027 4.027 8 C 0.291 3.709 9 O -0.457 6.457 10 N -0.350 5.350 11 C 0.033 3.967 12 H 0.091 0.909 13 C 0.066 3.934 14 N -0.347 5.347 15 C -0.365 4.365 16 H 0.106 0.894 17 C -0.264 4.264 18 N -0.602 5.602 19 Si 0.804 3.196 20 H -0.212 1.212 21 H -0.189 1.189 22 H -0.228 1.228 23 C 0.013 3.987 24 C -0.075 4.075 25 C -0.182 4.182 26 C -0.181 4.181 27 C -0.180 4.180 28 C -0.063 4.063 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.251 0.749 40 H 0.022 0.978 41 H 0.013 0.987 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.093 0.907 53 H 0.067 0.933 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.997 15.016 5.525 24.837 hybrid contribution 0.319 -1.327 0.516 1.459 sum -18.679 13.689 6.041 23.933 Atomic orbital electron populations 1.22373 0.85703 1.02671 1.01374 1.61891 1.09038 1.14299 1.44047 1.22039 0.93268 0.89070 1.01875 1.21646 0.95011 1.00452 0.98032 1.22390 0.79028 0.95864 0.99885 1.88061 1.18970 1.94914 1.28804 1.22310 0.87357 1.04838 0.88160 1.21032 0.89420 0.75549 0.84942 1.90712 1.81125 1.50655 1.23196 1.45697 1.05730 1.73945 1.09623 1.22038 0.80109 0.96157 0.98412 0.90902 1.21070 0.94655 0.89916 0.87725 1.44698 1.72888 1.10307 1.06786 1.19455 1.33763 0.89213 0.94075 0.89393 1.25714 1.02455 1.02652 0.95530 1.70254 1.51196 1.37531 1.01229 0.85128 0.78179 0.79012 0.77247 1.21207 1.18887 1.22820 1.21962 0.98873 0.86561 0.91287 1.22026 0.95834 0.95888 0.93717 1.21595 0.94366 1.00227 1.02016 1.21658 1.00394 0.96153 0.99909 1.22106 0.95809 0.97540 1.02525 1.22001 0.93536 0.99004 0.91801 0.90666 0.91023 0.94752 0.93313 0.89183 0.89980 0.92506 0.89685 0.88723 0.86204 0.74935 0.97838 0.98651 0.94824 0.94754 0.93265 0.91677 0.90161 0.95353 0.91379 0.90285 0.91633 0.92782 0.90743 0.93331 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.59 127.69 1.22 1.53 16 2 N -0.57 -9.36 4.91 -922.59 -4.53 -13.89 16 3 C 0.07 0.95 5.46 86.33 0.47 1.42 16 4 C -0.11 -2.20 5.75 30.65 0.18 -2.02 16 5 C 0.09 1.76 2.68 30.67 0.08 1.85 16 6 O -0.39 -11.44 9.53 -129.94 -1.24 -12.68 16 7 C 0.05 1.29 6.23 71.24 0.44 1.73 16 8 C 0.50 17.84 7.90 87.66 0.69 18.54 16 9 O -0.58 -27.52 16.23 16.00 0.26 -27.26 16 10 N -0.70 -22.27 4.57 -436.92 -2.00 -24.26 16 11 C 0.14 5.40 2.50 46.18 0.12 5.52 16 12 H 0.07 3.06 7.61 -2.38 -0.02 3.04 16 13 C 0.19 10.16 4.80 86.73 0.42 10.58 16 14 N -0.62 -31.63 3.38 -691.56 -2.34 -33.96 16 15 C -0.24 -13.28 10.27 84.03 0.86 -12.42 16 16 H 0.09 4.64 7.84 -2.91 -0.02 4.62 16 17 C -0.07 -4.17 5.48 84.86 0.46 -3.71 16 18 N -0.95 -61.20 10.36 21.65 0.22 -60.98 16 19 Si 0.98 47.24 29.56 68.60 2.03 49.27 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 23 C 0.14 5.14 6.15 86.93 0.53 5.68 16 24 C -0.07 -2.26 0.83 -50.71 -0.04 -2.30 16 25 C -0.12 -3.80 8.59 71.98 0.62 -3.18 16 26 C -0.12 -2.49 8.22 71.98 0.59 -1.90 16 27 C -0.14 -2.93 5.72 30.65 0.18 -2.75 16 28 C 0.06 1.02 5.46 86.33 0.47 1.50 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.78 8.09 -2.38 -0.02 0.76 16 31 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.26 7.79 -2.39 -0.02 1.25 16 37 H 0.09 1.98 7.96 -2.39 -0.02 1.96 16 38 H 0.12 1.83 8.09 -2.39 -0.02 1.81 16 39 H 0.41 10.00 6.90 -92.71 -0.64 9.36 16 40 H 0.00 0.21 7.30 -2.38 -0.02 0.20 16 41 H 0.00 -0.29 7.51 -2.39 -0.02 -0.31 16 42 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.03 1.18 7.99 -2.39 -0.02 1.16 16 44 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.03 1.08 7.91 -2.39 -0.02 1.07 16 48 H 0.07 1.16 6.38 -2.39 -0.02 1.14 16 49 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.07 1.44 7.96 -2.39 -0.02 1.42 16 53 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 54 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 Total: -1.00 -83.02 416.93 -0.07 -83.09 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.21 Total: 20.63 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 7.30 Total: 20.04 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -8.64 Total: -133.09 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.98 Total: -39.94 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.02 -0.07 -83.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675480923.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.885 kcal (2) G-P(sol) polarization free energy of solvation -83.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds