Wall clock time and date at job start Tue Mar 31 2020 22:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.53000 * 109.46989 * 240.00325 * 2 1 3 5 5 C 1.50694 * 109.47168 * 120.00314 * 2 1 3 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 2 1 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 2 1 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 2 9 9 C 1.53001 * 109.47084 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.50557 * 60.07314 * 9 8 7 11 11 C 1.53128 * 109.49919 * 299.99746 * 9 8 7 12 12 C 1.53123 * 109.15644 * 182.40483 * 11 9 8 13 13 C 1.53032 * 109.27877 * 57.65493 * 12 11 9 14 14 N 1.46846 * 109.52545 * 300.81553 * 13 12 11 15 15 C 1.46904 * 110.99996 * 185.83791 * 14 13 12 16 16 C 1.50701 * 109.46952 * 66.04932 * 15 14 13 17 17 O 1.21298 * 119.99573 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99854 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99977 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99489 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00153 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46741 * 60.00191 * 23 21 19 25 25 H 1.48499 * 109.47279 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47423 * 300.00429 * 23 21 19 27 27 C 1.46851 * 111.19410 * 61.74448 * 14 13 12 28 28 H 1.09002 * 109.46926 * 299.99861 * 1 2 3 29 29 H 1.08998 * 109.47385 * 59.99321 * 1 2 3 30 30 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47131 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47544 * 300.00581 * 3 2 1 33 33 H 1.09007 * 109.46721 * 60.00490 * 3 2 1 34 34 H 1.09000 * 109.47156 * 300.00206 * 4 2 1 35 35 H 1.08998 * 109.47223 * 59.99698 * 4 2 1 36 36 H 1.08995 * 109.47095 * 179.97438 * 4 2 1 37 37 H 0.97000 * 119.99339 * 0.02562 * 7 5 2 38 38 H 1.09007 * 109.47196 * 299.99538 * 8 7 5 39 39 H 1.09006 * 109.47678 * 59.99732 * 8 7 5 40 40 H 1.09000 * 109.46914 * 60.00087 * 10 9 8 41 41 H 1.09001 * 109.47131 * 180.02562 * 10 9 8 42 42 H 1.08998 * 109.47334 * 300.00276 * 10 9 8 43 43 H 1.08994 * 109.52177 * 302.30601 * 11 9 8 44 44 H 1.08992 * 109.52460 * 62.50027 * 11 9 8 45 45 H 1.09007 * 109.49731 * 177.59488 * 12 11 9 46 46 H 1.08996 * 109.50376 * 297.67428 * 12 11 9 47 47 H 1.09002 * 109.46746 * 60.83557 * 13 12 11 48 48 H 1.09003 * 109.46357 * 180.80185 * 13 12 11 49 49 H 1.09003 * 109.46742 * 186.04772 * 15 14 13 50 50 H 1.08999 * 109.46920 * 306.04823 * 15 14 13 51 51 H 0.96991 * 120.00313 * 0.02562 * 18 16 15 52 52 H 0.97000 * 120.00513 * 179.97438 * 22 21 19 53 53 H 1.09000 * 109.46131 * 178.24017 * 27 14 13 54 54 H 1.09000 * 109.46149 * 58.27727 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0290 7 7 3.3575 -0.8340 1.4434 8 6 3.8458 -1.5195 2.6425 9 6 5.3758 -1.5206 2.6418 10 6 5.8877 -0.0788 2.6368 11 6 5.8858 -2.2486 1.3949 12 6 7.4158 -2.2977 1.4324 13 6 7.8676 -2.9953 2.7174 14 7 7.3551 -2.2606 3.8809 15 6 7.8832 -2.8211 5.1319 16 6 9.3722 -2.5968 5.1937 17 8 9.9377 -2.0266 4.2847 18 7 10.0752 -3.0299 6.2588 19 6 11.4299 -2.8263 6.3148 20 1 11.9335 -2.3185 5.5055 21 6 12.1548 -3.2732 7.4127 22 7 11.5421 -3.8915 8.3971 23 14 14.0006 -2.9965 7.4886 24 1 14.2851 -1.5397 7.4397 25 1 14.5344 -3.5623 8.7536 26 1 14.6496 -3.6666 6.3332 27 6 5.8868 -2.2408 3.8917 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 3.9877 -0.4653 0.8048 38 1 3.4837 -1.0009 3.5303 39 1 3.4813 -2.5468 2.6477 40 1 5.5255 0.4384 3.5252 41 1 6.9778 -0.0803 2.6358 42 1 5.5247 0.4325 1.7453 43 1 5.4891 -3.2636 1.3779 44 1 5.5603 -1.7142 0.5025 45 1 7.7833 -2.8521 0.5688 46 1 7.8132 -1.2830 1.4095 47 1 7.4814 -4.0145 2.7325 48 1 8.9567 -3.0193 2.7540 49 1 7.4062 -2.3298 5.9800 50 1 7.6750 -3.8905 5.1673 51 1 9.6230 -3.4862 6.9855 52 1 12.0482 -4.2038 9.1634 53 1 5.5372 -1.7167 4.7812 54 1 5.5098 -3.2635 3.9013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754733036.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:01 Heat of formation + Delta-G solvation = -113.156594 kcal Electronic energy + Delta-G solvation = -30701.911311 eV Core-core repulsion = 26671.760876 eV Total energy + Delta-G solvation = -4030.150435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.51290 -40.71787 -39.63814 -36.82452 -36.51343 -35.81974 -34.15394 -33.24254 -32.65108 -29.10646 -28.28367 -28.19288 -27.87929 -27.09236 -26.50854 -24.23649 -23.58989 -22.37860 -20.95967 -20.42921 -19.84622 -19.34092 -17.82456 -17.73127 -17.08960 -16.67283 -16.50689 -16.40042 -16.27858 -15.71982 -15.52904 -15.38434 -15.17482 -14.98079 -14.83941 -14.51359 -14.39307 -14.07435 -13.87619 -13.69246 -13.45659 -13.26912 -13.15964 -13.01830 -12.98007 -12.89224 -12.68702 -12.60631 -12.55158 -12.42202 -12.29728 -12.11981 -11.99260 -11.87964 -11.83352 -11.54549 -11.47263 -11.25809 -11.16316 -10.68290 -10.21027 -10.05716 -9.98017 -9.13885 -8.44993 -5.93526 1.40028 1.41566 1.52482 1.66777 2.07690 2.16775 2.30176 2.80142 3.21794 3.40602 3.61917 3.69030 3.72308 3.84175 3.87461 3.96014 4.20173 4.25312 4.29056 4.31997 4.39569 4.43519 4.50063 4.54714 4.63790 4.70466 4.73651 4.74447 4.77057 4.81856 4.84678 4.90241 4.97232 4.97434 5.00565 5.03526 5.09585 5.11736 5.22368 5.24628 5.28738 5.35997 5.36270 5.41249 5.42585 5.47790 5.65236 5.92341 6.12507 6.27435 6.56389 6.62450 7.14567 7.26845 7.58679 8.14397 8.72219 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032476 B = 0.001935 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.967472 B =14467.406243 C =14726.578006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.516 3.484 6 O -0.588 6.588 7 N -0.711 5.711 8 C 0.138 3.862 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.102 4.102 12 C -0.107 4.107 13 C 0.052 3.948 14 N -0.521 5.521 15 C 0.057 3.943 16 C 0.444 3.556 17 O -0.610 6.610 18 N -0.577 5.577 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.066 3.934 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.026 0.974 48 H 0.059 0.941 49 H 0.107 0.893 50 H 0.062 0.938 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.080 0.920 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.009 6.460 -18.283 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.304 3.696 6 O -0.468 6.468 7 N -0.363 5.363 8 C 0.014 3.986 9 C -0.056 4.056 10 C -0.187 4.187 11 C -0.139 4.139 12 C -0.145 4.145 13 C -0.076 4.076 14 N -0.246 5.246 15 C -0.075 4.075 16 C 0.231 3.769 17 O -0.496 6.496 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.062 4.062 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.044 0.956 48 H 0.077 0.923 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.228 0.772 52 H 0.086 0.914 53 H 0.099 0.901 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.933 6.905 -18.168 27.841 hybrid contribution 0.871 -1.110 0.977 1.716 sum -19.063 5.795 -17.191 26.316 Atomic orbital electron populations 1.21665 0.92430 1.01982 1.02393 1.20867 0.97751 0.97287 0.92843 1.21892 1.01943 0.92438 1.03397 1.21888 1.01977 1.00072 0.95677 1.21202 0.82035 0.78754 0.87652 1.90679 1.56571 1.50689 1.48903 1.45941 1.06928 1.58283 1.25193 1.21185 0.92510 0.97079 0.87859 1.20667 0.92513 0.97094 0.95374 1.21744 1.01785 0.93666 1.01510 1.21629 0.94703 1.00491 0.97101 1.21528 0.96122 1.01262 0.95588 1.22174 1.00348 0.94146 0.90893 1.61420 1.07644 1.54624 1.00910 1.21712 0.91756 0.99355 0.94636 1.20716 0.90007 0.82990 0.83187 1.90458 1.72571 1.47143 1.39418 1.41945 1.07798 1.52291 1.19376 1.19612 0.84036 1.36845 1.05488 0.90230 1.26036 1.04731 0.96111 0.94580 1.69669 1.38499 1.39072 1.09072 0.84994 0.76924 0.78650 0.77798 1.19729 1.19633 1.19690 1.22109 0.86237 0.99244 0.98635 0.93535 0.89670 0.93450 0.91000 0.89391 0.93089 0.92967 0.89428 0.90925 0.75027 0.92185 0.92139 0.93257 0.92514 0.91495 0.91805 0.89712 0.90614 0.91657 0.95579 0.92264 0.87509 0.92006 0.77170 0.91398 0.90120 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 7.76 71.98 0.56 -1.19 16 2 C -0.08 -1.04 0.87 -52.93 -0.05 -1.09 16 3 C -0.14 -1.20 8.37 71.98 0.60 -0.60 16 4 C -0.14 -1.13 8.37 71.98 0.60 -0.53 16 5 C 0.52 9.93 6.48 87.65 0.57 10.50 16 6 O -0.59 -16.84 15.98 -3.04 -0.05 -16.89 16 7 N -0.71 -10.88 4.76 -463.05 -2.21 -13.08 16 8 C 0.14 2.53 4.57 86.38 0.39 2.93 16 9 C -0.06 -1.04 0.53 -52.13 -0.03 -1.07 16 10 C -0.13 -2.54 7.86 71.98 0.57 -1.98 16 11 C -0.10 -1.76 4.58 30.68 0.14 -1.62 16 12 C -0.11 -2.50 5.74 30.65 0.18 -2.32 16 13 C 0.05 1.62 5.11 86.32 0.44 2.06 16 14 N -0.52 -16.23 3.68 -900.91 -3.31 -19.54 16 15 C 0.06 1.97 5.45 85.56 0.47 2.44 16 16 C 0.44 21.03 7.46 87.66 0.65 21.68 16 17 O -0.61 -33.06 13.92 -3.09 -0.04 -33.10 16 18 N -0.58 -29.71 5.29 -306.98 -1.62 -31.33 16 19 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.07 1.54 4.18 86.32 0.36 1.90 16 28 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.07 0.47 7.57 -2.39 -0.02 0.45 16 32 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.07 0.42 7.56 -2.39 -0.02 0.40 16 37 H 0.41 4.32 5.03 -92.71 -0.47 3.85 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.45 6.01 -2.39 -0.01 1.44 16 42 H 0.07 0.96 6.86 -2.39 -0.02 0.94 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.05 6.95 -2.39 -0.02 1.03 16 45 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.06 1.68 6.58 -2.39 -0.02 1.66 16 47 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 2.38 5.80 -2.39 -0.01 2.36 16 49 H 0.11 3.32 7.98 -2.39 -0.02 3.30 16 50 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 51 H 0.39 19.46 7.90 -92.71 -0.73 18.73 16 52 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 53 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 54 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -71.81 413.81 1.50 -70.31 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.31 Total: 35.54 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.74 Total: 12.83 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -6.86 Total: -113.81 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.09 Total: -49.99 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -71.81 1.50 -70.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754733036.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.845 kcal (2) G-P(sol) polarization free energy of solvation -71.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds