Wall clock time and date at job start Tue Mar 31 2020 23:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47360 * 2 1 4 4 C 1.52999 * 109.47362 * 60.00114 * 3 2 1 5 5 C 1.52997 * 109.47208 * 299.99909 * 3 2 1 6 6 C 1.50700 * 109.47194 * 179.97438 * 3 2 1 7 7 O 1.21282 * 120.00018 * 0.02562 * 6 3 2 8 8 N 1.34784 * 120.00066 * 179.97438 * 6 3 2 9 9 C 1.46495 * 119.99785 * 179.97438 * 8 6 3 10 10 C 1.53001 * 109.47039 * 176.06928 * 9 8 6 11 11 N 1.46896 * 110.01680 * 303.76546 * 10 9 8 12 12 C 1.46905 * 110.99962 * 305.54394 * 11 10 9 13 13 C 1.50706 * 109.47161 * 185.17013 * 12 11 10 14 14 O 1.21295 * 119.99832 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99762 * 180.02562 * 13 12 11 16 16 C 1.37091 * 119.99937 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00008 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00212 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47193 * 89.99328 * 20 18 16 22 22 H 1.48498 * 109.47272 * 209.99761 * 20 18 16 23 23 H 1.48507 * 109.46830 * 329.99881 * 20 18 16 24 24 C 1.54268 * 110.03502 * 182.31911 * 10 9 8 25 25 C 1.54884 * 104.19711 * 217.10390 * 24 10 9 26 26 C 1.54891 * 102.75002 * 37.94337 * 25 24 10 27 27 C 1.53873 * 110.03221 * 65.15227 * 10 9 8 28 28 H 1.09001 * 109.47074 * 300.00342 * 1 2 3 29 29 H 1.09002 * 109.47220 * 60.00026 * 1 2 3 30 30 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47074 * 239.99657 * 2 1 3 32 32 H 1.09004 * 109.46889 * 120.00394 * 2 1 3 33 33 H 1.09001 * 109.47436 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.46758 * 299.99819 * 4 3 2 35 35 H 1.08999 * 109.47527 * 59.99302 * 4 3 2 36 36 H 1.09001 * 109.46897 * 300.00141 * 5 3 2 37 37 H 1.09005 * 109.47241 * 59.99980 * 5 3 2 38 38 H 1.09001 * 109.47200 * 179.97438 * 5 3 2 39 39 H 0.96998 * 119.99962 * 0.02562 * 8 6 3 40 40 H 1.08997 * 109.47336 * 56.07101 * 9 8 6 41 41 H 1.09004 * 109.47431 * 296.06698 * 9 8 6 42 42 H 1.00900 * 111.00806 * 69.50185 * 11 10 9 43 43 H 1.08990 * 109.47194 * 305.17269 * 12 11 10 44 44 H 1.09000 * 109.46774 * 65.17443 * 12 11 10 45 45 H 0.97003 * 119.99958 * 359.97438 * 15 13 12 46 46 H 0.97001 * 120.00193 * 180.02562 * 19 18 16 47 47 H 1.08994 * 110.48369 * 335.78796 * 24 10 9 48 48 H 1.09005 * 110.48502 * 98.42734 * 24 10 9 49 49 H 1.08995 * 110.75915 * 279.62842 * 25 24 10 50 50 H 1.08997 * 110.75421 * 156.25955 * 25 24 10 51 51 H 1.08989 * 110.48949 * 203.37593 * 26 25 24 52 52 H 1.09004 * 110.48637 * 80.73279 * 26 25 24 53 53 H 1.09002 * 110.03646 * 238.56843 * 27 10 9 54 54 H 1.09006 * 110.03374 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5470 1.4424 0.0006 7 8 4.1534 0.3920 0.0006 8 7 4.2210 2.6096 0.0002 9 6 5.6859 2.6095 0.0014 10 6 6.1961 4.0485 -0.0982 11 7 5.6415 4.6969 -1.2940 12 6 5.9252 3.9079 -2.5002 13 6 5.4547 4.6630 -3.7166 14 8 4.9346 5.7516 -3.5910 15 7 5.6118 4.1287 -4.9439 16 6 5.1843 4.8158 -6.0504 17 1 4.7212 5.7851 -5.9387 18 6 5.3467 4.2653 -7.3158 19 7 4.9364 4.9237 -8.3766 20 14 6.1470 2.5885 -7.5092 21 1 5.1038 1.5329 -7.4555 22 1 6.8504 2.5233 -8.8154 23 1 7.1230 2.3762 -6.4102 24 6 7.7376 4.0599 -0.1566 25 6 8.1397 5.3089 0.6663 26 6 7.1117 5.3004 1.8248 27 6 5.7981 4.8373 1.1616 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8931 3.1915 1.2490 34 1 0.4401 2.1638 1.2492 35 1 1.8933 1.6499 2.1392 36 1 1.8934 1.6498 -2.1392 37 1 0.4400 2.1637 -1.2493 38 1 1.8931 3.1915 -1.2490 39 1 3.7360 3.4496 -0.0001 40 1 6.0500 2.0352 -0.8505 41 1 6.0486 2.1586 0.9252 42 1 4.6506 4.8575 -1.1917 43 1 6.9981 3.7312 -2.5748 44 1 5.4029 2.9530 -2.4409 45 1 6.0280 3.2583 -5.0443 46 1 5.0495 4.5391 -9.2599 47 1 8.1432 3.1563 0.2985 48 1 8.0797 4.1557 -1.1871 49 1 8.0398 6.2144 0.0679 50 1 9.1550 5.2082 1.0500 51 1 6.9969 6.3015 2.2404 52 1 7.4162 4.5972 2.6000 53 1 5.1942 5.7017 0.8857 54 1 5.2419 4.1948 1.8442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753667613.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:37 Heat of formation + Delta-G solvation = -113.797587 kcal Electronic energy + Delta-G solvation = -31656.290418 eV Core-core repulsion = 27626.112188 eV Total energy + Delta-G solvation = -4030.178230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65511 -40.56503 -39.69735 -37.35094 -36.11596 -35.77358 -34.60099 -33.73449 -31.39456 -30.04833 -29.66985 -28.32663 -28.09153 -26.30891 -25.67535 -24.93624 -22.66022 -21.60253 -21.14175 -20.41137 -20.18517 -19.76968 -18.27263 -17.83196 -17.21152 -17.06870 -16.70838 -16.57062 -16.06578 -15.83543 -15.72670 -15.42314 -15.38410 -14.99023 -14.96575 -14.60885 -14.36731 -14.17828 -13.99468 -13.93485 -13.57468 -13.55771 -13.13662 -13.01391 -12.85680 -12.84718 -12.52948 -12.44500 -12.32708 -12.19259 -12.16675 -12.01111 -11.91298 -11.80528 -11.68886 -11.57740 -11.57493 -11.53330 -11.34010 -10.72159 -10.44735 -10.25998 -10.16883 -9.38919 -8.43149 -6.03008 1.27150 1.31174 1.39701 1.58135 1.93102 2.09735 2.19304 2.66796 3.13279 3.33682 3.52503 3.56756 3.63935 3.74454 3.85089 3.87599 4.08506 4.17521 4.28789 4.32306 4.35787 4.39515 4.41602 4.52279 4.56104 4.62928 4.64521 4.70467 4.70706 4.84651 4.86455 4.90000 4.92806 5.02023 5.05180 5.08168 5.09574 5.10473 5.14157 5.20117 5.28042 5.30507 5.37691 5.38945 5.51008 5.51265 5.58240 5.89597 6.02509 6.35548 6.42976 6.57582 6.86519 7.15817 7.37987 7.93613 8.74302 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007618 B = 0.004114 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3674.781345 B = 6803.679411 C = 9326.237755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.078 4.078 4 C -0.138 4.138 5 C -0.144 4.144 6 C 0.519 3.481 7 O -0.581 6.581 8 N -0.717 5.717 9 C 0.094 3.906 10 C 0.108 3.892 11 N -0.654 5.654 12 C 0.060 3.940 13 C 0.453 3.547 14 O -0.606 6.606 15 N -0.593 5.593 16 C -0.325 4.325 17 H 0.060 0.940 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.956 3.044 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.236 1.236 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.113 4.113 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.406 0.594 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.343 0.657 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.386 0.614 46 H 0.279 0.721 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.077 0.923 53 H 0.071 0.929 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -8.930 24.563 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.081 4.081 4 C -0.196 4.196 5 C -0.202 4.202 6 C 0.307 3.693 7 O -0.460 6.460 8 N -0.370 5.370 9 C -0.032 4.032 10 C 0.016 3.984 11 N -0.287 5.287 12 C -0.073 4.073 13 C 0.241 3.759 14 O -0.490 6.490 15 N -0.235 5.235 16 C -0.454 4.454 17 H 0.078 0.922 18 C -0.209 4.209 19 N -0.572 5.572 20 Si 0.777 3.223 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.160 1.160 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.151 4.151 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.127 0.873 44 H 0.079 0.921 45 H 0.221 0.779 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.095 0.905 51 H 0.089 0.911 52 H 0.096 0.904 53 H 0.090 0.910 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.950 -8.480 24.340 25.793 hybrid contribution -0.369 -1.047 -1.099 1.563 sum -1.319 -9.528 23.241 25.153 Atomic orbital electron populations 1.21897 0.93532 1.02452 1.02945 1.21315 0.97097 0.93449 1.01765 1.20837 0.89339 0.98789 0.99106 1.21926 1.03248 0.99998 0.94398 1.21950 1.03364 0.99790 0.95050 1.21115 0.90959 0.83037 0.74210 1.90665 1.71361 1.32735 1.51287 1.45952 1.07252 1.08869 1.74883 1.22166 0.80046 0.98597 1.02341 1.22011 0.96270 0.89702 0.90373 1.60321 1.20655 1.47599 1.00102 1.21620 1.02854 0.94392 0.88412 1.20822 0.82986 0.87365 0.84737 1.90540 1.48298 1.23607 1.86509 1.42068 1.56142 1.19612 1.05667 1.19004 1.38188 1.03271 0.84963 0.92223 1.25984 0.97778 1.03153 0.93941 1.69786 1.47556 1.40672 0.99218 0.85485 0.79535 0.77657 0.79645 1.18454 1.19727 1.16002 1.22455 0.92039 0.99579 1.01072 1.22389 0.99286 0.97251 0.96520 1.22282 0.93829 1.01714 0.97392 1.22267 0.98993 0.99709 0.94120 0.90843 0.91992 0.92187 0.93537 0.92229 0.91176 0.89281 0.92142 0.93927 0.89078 0.91910 0.75708 0.92469 0.90498 0.83672 0.87300 0.92105 0.77913 0.91146 0.89617 0.91851 0.92701 0.90451 0.91103 0.90434 0.90995 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.21 71.98 0.66 -1.42 16 2 C -0.10 -1.89 4.28 30.59 0.13 -1.76 16 3 C -0.08 -1.42 0.64 -52.93 -0.03 -1.46 16 4 C -0.14 -1.74 8.02 71.98 0.58 -1.17 16 5 C -0.14 -2.70 8.02 71.98 0.58 -2.13 16 6 C 0.52 12.39 6.48 87.66 0.57 12.96 16 7 O -0.58 -18.47 15.98 -3.03 -0.05 -18.52 16 8 N -0.72 -14.25 4.85 -463.06 -2.24 -16.49 16 9 C 0.09 1.92 3.56 86.38 0.31 2.22 16 10 C 0.11 2.10 0.55 4.25 0.00 2.11 16 11 N -0.65 -17.62 5.47 -470.56 -2.58 -20.20 16 12 C 0.06 1.86 5.28 85.56 0.45 2.31 16 13 C 0.45 20.35 7.83 87.66 0.69 21.04 16 14 O -0.61 -32.69 15.89 -3.08 -0.05 -32.74 16 15 N -0.59 -28.35 5.09 -306.99 -1.56 -29.92 16 16 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 17 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 18 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 19 N -0.93 -56.23 13.96 21.66 0.30 -55.93 16 20 Si 0.96 39.82 27.74 68.60 1.90 41.73 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.24 -8.51 6.52 99.48 0.65 -7.87 16 24 C -0.11 -2.12 5.83 31.67 0.18 -1.93 16 25 C -0.12 -2.02 6.91 31.88 0.22 -1.80 16 26 C -0.11 -1.64 6.83 31.67 0.22 -1.42 16 27 C -0.11 -1.80 5.74 31.32 0.18 -1.62 16 28 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 29 H 0.06 0.83 6.43 -2.39 -0.02 0.82 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.07 0.75 7.57 -2.39 -0.02 0.73 16 34 H 0.09 0.85 6.43 -2.38 -0.02 0.84 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.37 6.43 -2.38 -0.02 1.35 16 38 H 0.06 1.15 7.56 -2.39 -0.02 1.14 16 39 H 0.41 6.87 6.01 -92.71 -0.56 6.32 16 40 H 0.06 1.37 6.73 -2.39 -0.02 1.35 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.34 9.37 7.34 -89.69 -0.66 8.71 16 43 H 0.11 3.04 6.24 -2.39 -0.01 3.02 16 44 H 0.06 1.77 6.66 -2.39 -0.02 1.75 16 45 H 0.39 15.79 5.76 -92.71 -0.53 15.25 16 46 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.09 1.32 7.85 -2.39 -0.02 1.31 16 48 H 0.06 1.39 6.18 -2.38 -0.01 1.37 16 49 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.07 1.27 7.85 -2.39 -0.02 1.25 16 54 H 0.08 1.06 7.54 -2.38 -0.02 1.05 16 Total: -1.00 -77.21 410.58 0.89 -76.32 By element: Atomic # 1 Polarization: 48.98 SS G_CDS: -0.89 Total: 48.09 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.05 Total: 7.66 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -6.08 Total: -122.54 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.10 Total: -51.26 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.90 Total: 41.73 kcal Total: -77.21 0.89 -76.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667613.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.480 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds