Wall clock time and date at job start Tue Mar 31 2020 22:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00097 * 2 1 4 4 N 1.34777 * 120.00288 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00346 * 179.97438 * 4 2 1 6 6 H 1.08992 * 109.47373 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47076 * 300.00521 * 5 4 2 8 8 C 1.53005 * 109.46947 * 294.99585 * 7 5 4 9 9 C 1.52992 * 109.47098 * 175.00180 * 8 7 5 10 10 C 1.52998 * 109.47035 * 295.00179 * 8 7 5 11 11 C 1.50705 * 109.47021 * 60.00115 * 5 4 2 12 12 O 1.21281 * 119.99872 * 340.00444 * 11 5 4 13 13 N 1.34771 * 119.99810 * 160.00247 * 11 5 4 14 14 C 1.46932 * 120.62744 * 180.02562 * 13 11 5 15 15 C 1.53192 * 108.77844 * 126.40951 * 14 13 11 16 16 C 1.53045 * 109.30943 * 54.63390 * 15 14 13 17 17 C 1.53003 * 109.45779 * 178.62811 * 16 15 14 18 18 N 1.46490 * 109.46384 * 58.65283 * 16 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.53044 * 109.52582 * 298.63661 * 16 15 14 28 28 C 1.46920 * 120.63299 * 0.02562 * 13 11 5 29 29 H 1.08999 * 109.47410 * 239.99423 * 1 2 3 30 30 H 1.09005 * 109.47258 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47222 * 119.99830 * 1 2 3 32 32 H 0.97004 * 119.99923 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.47100 * 54.99733 * 7 5 4 34 34 H 1.08998 * 109.47049 * 174.99844 * 7 5 4 35 35 H 1.09000 * 109.46718 * 55.00023 * 8 7 5 36 36 H 1.08998 * 109.46933 * 59.99762 * 9 8 7 37 37 H 1.09005 * 109.47269 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.46997 * 300.00099 * 9 8 7 39 39 H 1.08997 * 109.47132 * 180.02562 * 10 8 7 40 40 H 1.08992 * 109.47507 * 300.00347 * 10 8 7 41 41 H 1.09003 * 109.47153 * 60.00062 * 10 8 7 42 42 H 1.08996 * 109.58846 * 6.61888 * 14 13 11 43 43 H 1.09003 * 109.57689 * 246.19391 * 14 13 11 44 44 H 1.08995 * 109.49437 * 294.68286 * 15 14 13 45 45 H 1.08996 * 109.52274 * 174.59662 * 15 14 13 46 46 H 1.08997 * 109.46965 * 300.02851 * 17 16 15 47 47 H 1.09002 * 109.46920 * 60.02578 * 17 16 15 48 48 H 1.08994 * 109.46997 * 180.02562 * 17 16 15 49 49 H 0.97000 * 120.00577 * 359.97352 * 18 16 15 50 50 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 51 51 H 1.09000 * 109.49970 * 181.31217 * 27 16 15 52 52 H 1.09001 * 109.50257 * 301.41366 * 27 16 15 53 53 H 1.08998 * 109.58779 * 353.38124 * 28 13 11 54 54 H 1.09004 * 109.58727 * 113.80354 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0092 -2.1948 0.0000 7 6 4.1554 -0.4466 -1.2499 8 6 3.7502 -1.2376 -2.4954 9 6 4.1498 -0.4560 -3.7484 10 6 4.4599 -2.5931 -2.4919 11 6 4.1487 -0.4560 1.2298 12 8 3.4205 0.3058 1.8300 13 7 5.4075 -0.6665 1.6626 14 6 5.9118 0.0191 2.8603 15 6 6.4646 -1.0282 3.8321 16 6 7.5082 -1.8855 3.1123 17 6 8.0874 -2.9106 4.0893 18 7 8.5841 -1.0266 2.6114 19 6 9.6371 -1.5755 1.9295 20 1 9.6743 -2.6416 1.7606 21 6 10.6569 -0.7618 1.4553 22 7 10.6119 0.5374 1.6616 23 14 12.0930 -1.5105 0.5244 24 1 13.0400 -0.4373 0.1289 25 1 12.7911 -2.4896 1.3959 26 1 11.5898 -2.2000 -0.6907 27 6 6.8499 -2.6149 1.9389 28 6 6.3016 -1.5859 0.9458 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6959 -2.0073 0.0005 33 1 3.7207 0.5519 -1.2963 34 1 5.2417 -0.3684 -1.2067 35 1 2.6712 -1.3924 -2.4924 36 1 5.2288 -0.3012 -3.7513 37 1 3.8608 -1.0193 -4.6357 38 1 3.6442 0.5097 -3.7508 39 1 4.1716 -3.1564 -3.3794 40 1 5.5387 -2.4384 -2.4948 41 1 4.1751 -3.1500 -1.5992 42 1 5.0992 0.5671 3.3371 43 1 6.7056 0.7108 2.5781 44 1 5.6515 -1.6634 4.1834 45 1 6.9285 -0.5276 4.6819 46 1 8.5567 -2.3914 4.9249 47 1 7.2870 -3.5498 4.4621 48 1 8.8310 -3.5210 3.5770 49 1 8.5506 -0.0691 2.7627 50 1 9.8659 0.9262 2.1446 51 1 7.5882 -3.2433 1.4407 52 1 6.0332 -3.2352 2.3081 53 1 5.7462 -2.0970 0.1595 54 1 7.1273 -1.0253 0.5075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281526708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:33 Heat of formation + Delta-G solvation = -90.275901 kcal Electronic energy + Delta-G solvation = -32685.487340 eV Core-core repulsion = 28656.329086 eV Total energy + Delta-G solvation = -4029.158253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.94100 -40.45456 -38.99495 -37.71829 -36.16193 -35.03591 -34.38107 -32.52201 -31.51034 -30.55915 -29.50248 -28.81489 -28.02554 -26.02150 -25.48656 -24.30536 -23.79389 -22.11570 -21.03891 -20.55394 -19.72139 -18.86939 -18.73864 -17.74733 -17.31520 -16.91378 -16.39917 -16.30525 -16.05137 -15.79070 -15.48718 -15.36300 -15.11086 -14.95351 -14.75959 -14.59511 -14.19093 -14.16814 -13.79718 -13.56654 -13.29633 -13.27779 -13.18574 -13.06226 -12.86053 -12.78806 -12.73833 -12.63933 -12.57308 -12.26496 -12.16344 -11.91283 -11.80557 -11.75131 -11.72613 -11.55531 -11.46346 -11.07986 -10.94526 -10.81046 -10.55009 -9.92475 -9.63315 -8.97860 -8.23793 -5.17642 1.56079 1.61018 1.70198 1.72273 1.85245 2.05581 2.39828 2.77962 3.38832 3.52618 3.65134 3.72056 3.82591 3.88230 3.90473 4.01826 4.07282 4.10059 4.14506 4.21313 4.33423 4.42645 4.54708 4.58489 4.60448 4.64328 4.69789 4.70739 4.77162 4.79430 4.85259 4.94200 4.96157 4.98747 5.00940 5.04839 5.09828 5.10631 5.12040 5.25212 5.27551 5.29664 5.42841 5.44743 5.51390 5.53543 5.63880 5.76968 6.45177 6.60940 6.67699 7.16207 7.21171 7.50012 8.11975 8.26425 9.27469 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.003778 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.822331 B = 7408.579436 C = 8578.590496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.573 6.573 4 N -0.707 5.707 5 C 0.142 3.858 6 H 0.141 0.859 7 C -0.123 4.123 8 C -0.081 4.081 9 C -0.148 4.148 10 C -0.152 4.152 11 C 0.493 3.507 12 O -0.563 6.563 13 N -0.600 5.600 14 C 0.122 3.878 15 C -0.117 4.117 16 C 0.192 3.808 17 C -0.142 4.142 18 N -0.737 5.737 19 C -0.297 4.297 20 H 0.073 0.927 21 C -0.110 4.110 22 N -0.985 5.985 23 Si 1.117 2.883 24 H -0.304 1.304 25 H -0.282 1.282 26 H -0.275 1.275 27 C -0.127 4.127 28 C 0.123 3.877 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.423 0.577 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.043 0.957 49 H 0.354 0.646 50 H 0.240 0.760 51 H 0.069 0.931 52 H 0.081 0.919 53 H 0.103 0.897 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.891 -12.900 -6.518 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.451 6.451 4 N -0.362 5.362 5 C 0.033 3.967 6 H 0.158 0.842 7 C -0.162 4.162 8 C -0.099 4.099 9 C -0.205 4.205 10 C -0.209 4.209 11 C 0.281 3.719 12 O -0.441 6.441 13 N -0.334 5.334 14 C -0.001 4.001 15 C -0.156 4.156 16 C 0.102 3.898 17 C -0.201 4.201 18 N -0.380 5.380 19 C -0.428 4.428 20 H 0.090 0.910 21 C -0.301 4.301 22 N -0.635 5.635 23 Si 0.945 3.055 24 H -0.231 1.231 25 H -0.208 1.208 26 H -0.201 1.201 27 C -0.167 4.167 28 C 0.001 3.999 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.187 0.813 50 H 0.050 0.950 51 H 0.088 0.912 52 H 0.100 0.900 53 H 0.121 0.879 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.435 -11.673 -7.013 23.731 hybrid contribution -0.834 0.525 1.215 1.564 sum -20.269 -11.149 -5.798 23.848 Atomic orbital electron populations 1.21883 0.88482 1.05485 1.06262 1.21509 0.92055 0.83165 0.74122 1.90719 1.71744 1.33435 1.49213 1.45574 1.04628 1.09685 1.76284 1.20914 0.82709 1.01688 0.91404 0.84204 1.21938 1.00537 1.00178 0.93550 1.21001 1.01058 0.95381 0.92500 1.21831 1.01053 0.99795 0.97858 1.21960 1.00300 0.95587 1.03038 1.21601 0.81206 0.82392 0.86705 1.90680 1.56745 1.37796 1.58915 1.48132 1.12388 1.44834 1.28010 1.21311 0.97678 0.94893 0.86262 1.22000 0.98496 0.97713 0.97351 1.19808 0.87070 0.90497 0.92385 1.22108 1.00492 0.98853 0.98639 1.42729 1.23094 1.05098 1.67050 1.20173 1.00317 0.93791 1.28549 0.90955 1.26843 1.04119 0.95371 1.03718 1.70996 1.33827 1.12065 1.46617 0.82735 0.73421 0.73773 0.75619 1.23138 1.20838 1.20143 1.22215 0.99962 0.97350 0.97191 1.21685 0.92602 0.90918 0.94728 0.87788 0.90289 0.86367 0.73858 0.92486 0.92148 0.89954 0.93488 0.90785 0.93986 0.90981 0.93215 0.91222 0.90707 0.94172 0.89536 0.91259 0.94592 0.91099 0.93834 0.81349 0.94969 0.91210 0.90004 0.87854 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.32 71.23 0.74 -1.49 16 2 C 0.50 12.32 6.70 87.65 0.59 12.90 16 3 O -0.57 -21.33 12.94 19.44 0.25 -21.08 16 4 N -0.71 -13.04 4.57 -446.10 -2.04 -15.07 16 5 C 0.14 3.26 2.03 44.25 0.09 3.35 16 6 H 0.14 2.28 4.74 -2.39 -0.01 2.27 16 7 C -0.12 -3.10 3.78 30.60 0.12 -2.99 16 8 C -0.08 -1.42 2.86 -10.80 -0.03 -1.45 16 9 C -0.15 -2.77 9.19 71.98 0.66 -2.11 16 10 C -0.15 -2.09 8.95 71.98 0.64 -1.44 16 11 C 0.49 16.35 6.69 87.66 0.59 16.94 16 12 O -0.56 -23.22 13.09 19.43 0.25 -22.97 16 13 N -0.60 -19.87 2.97 -818.99 -2.43 -22.31 16 14 C 0.12 4.40 6.16 86.36 0.53 4.94 16 15 C -0.12 -3.76 4.96 30.67 0.15 -3.61 16 16 C 0.19 6.75 0.74 3.64 0.00 6.76 16 17 C -0.14 -4.66 8.44 71.98 0.61 -4.06 16 18 N -0.74 -33.93 4.13 -303.23 -1.25 -35.18 16 19 C -0.30 -15.18 8.68 84.03 0.73 -14.45 16 20 H 0.07 3.55 6.70 -2.91 -0.02 3.53 16 21 C -0.11 -6.13 5.50 84.86 0.47 -5.67 16 22 N -0.99 -61.18 13.70 21.65 0.30 -60.88 16 23 Si 1.12 50.80 29.92 68.60 2.05 52.85 16 24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 27 C -0.13 -3.82 4.70 30.66 0.14 -3.67 16 28 C 0.12 3.77 5.33 86.35 0.46 4.23 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.29 8.12 -2.38 -0.02 1.27 16 31 H 0.12 0.79 8.14 -2.38 -0.02 0.78 16 32 H 0.42 3.87 8.83 -92.71 -0.82 3.05 16 33 H 0.06 1.88 6.05 -2.39 -0.01 1.86 16 34 H 0.06 1.71 7.20 -2.39 -0.02 1.69 16 35 H 0.08 1.24 7.62 -2.39 -0.02 1.22 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.73 6.46 -2.39 -0.02 0.72 16 42 H 0.07 2.80 7.01 -2.39 -0.02 2.78 16 43 H 0.04 1.67 6.94 -2.39 -0.02 1.66 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 49 H 0.35 18.04 5.29 -92.71 -0.49 17.55 16 50 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16 51 H 0.07 2.22 7.31 -2.39 -0.02 2.20 16 52 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.10 2.39 5.18 -2.39 -0.01 2.38 16 54 H 0.05 1.84 7.74 -2.38 -0.02 1.82 16 Total: -1.00 -79.99 404.60 3.35 -76.64 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.26 Total: 39.81 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.48 Total: 8.19 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -5.43 Total: -133.45 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: 0.51 Total: -44.05 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -79.99 3.35 -76.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281526708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.633 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds