Wall clock time and date at job start Tue Mar 31 2020 23:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.50112 * 59.92009 * 8 6 5 10 10 C 1.53116 * 109.50564 * 299.80219 * 8 6 5 11 11 C 1.53115 * 109.16469 * 182.40093 * 10 8 6 12 12 C 1.53043 * 109.27210 * 57.65384 * 11 10 8 13 13 H 1.09005 * 109.46341 * 60.84089 * 12 11 10 14 14 C 1.52999 * 109.45187 * 180.80900 * 12 11 10 15 15 N 1.46842 * 109.52685 * 300.82134 * 12 11 10 16 16 C 1.46904 * 111.00022 * 185.84248 * 15 12 11 17 17 C 1.50700 * 109.47021 * 301.83248 * 16 15 12 18 18 O 1.21285 * 120.00089 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.46498 * 120.00262 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47360 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99641 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00296 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99726 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00299 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46981 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47310 * 119.99733 * 25 23 21 28 28 H 1.48501 * 109.47249 * 239.99872 * 25 23 21 29 29 C 1.46845 * 111.19836 * 61.74090 * 15 12 11 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 38 38 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 39 39 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 40 40 H 1.08997 * 109.52289 * 302.31223 * 10 8 6 41 41 H 1.09004 * 109.52256 * 62.49754 * 10 8 6 42 42 H 1.08999 * 109.50706 * 297.72067 * 11 10 8 43 43 H 1.09001 * 109.53973 * 177.61085 * 11 10 8 44 44 H 1.08997 * 109.47459 * 180.02562 * 14 12 11 45 45 H 1.08998 * 109.47513 * 300.05083 * 14 12 11 46 46 H 1.09005 * 109.47266 * 60.04913 * 14 12 11 47 47 H 1.08993 * 109.47412 * 61.83654 * 16 15 12 48 48 H 1.09005 * 109.46997 * 181.83785 * 16 15 12 49 49 H 0.96997 * 119.99751 * 0.02562 * 19 17 16 50 50 H 1.08997 * 109.47124 * 299.99912 * 20 19 17 51 51 H 1.08996 * 109.47039 * 60.00338 * 20 19 17 52 52 H 0.97006 * 120.00092 * 180.02562 * 24 23 21 53 53 H 1.08998 * 109.46230 * 178.23968 * 29 15 12 54 54 H 1.09006 * 109.45183 * 58.27110 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 5.3835 3.0697 0.0001 7 8 6.1715 2.1479 0.0001 8 6 5.8859 4.4906 0.0001 9 1 5.5216 5.0053 0.8892 10 6 5.3801 5.2117 -1.2523 11 6 5.9438 6.6352 -1.2748 12 6 7.4725 6.5737 -1.2377 13 1 7.8359 6.0365 -2.1138 14 6 8.0398 7.9947 -1.2397 15 7 7.9063 5.8755 -0.0209 16 6 9.3681 5.9187 0.1182 17 6 10.0067 5.2936 -1.0952 18 8 9.3126 4.8557 -1.9882 19 7 11.3493 5.2220 -1.1887 20 6 11.9702 4.6149 -2.3685 21 6 13.4698 4.6590 -2.2258 22 1 13.9157 5.0961 -1.3446 23 6 14.2725 4.1425 -3.2207 24 7 13.7294 3.6107 -4.2940 25 14 16.1313 4.1966 -3.0436 26 1 16.4870 4.8406 -1.7537 27 1 16.6718 2.8138 -3.0726 28 1 16.7128 4.9789 -4.1639 29 6 7.4162 4.4914 0.0003 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9284 0.8891 38 1 3.9329 0.9286 -0.8908 39 1 3.4281 3.5609 0.0003 40 1 5.7117 4.6745 -2.1408 41 1 4.2910 5.2515 -1.2349 42 1 5.5805 7.1843 -0.4061 43 1 5.6220 7.1403 -2.1855 44 1 9.1286 7.9514 -1.2137 45 1 7.7179 8.5132 -2.1428 46 1 7.6769 8.5320 -0.3634 47 1 9.6941 6.9548 0.2073 48 1 9.6647 5.3664 1.0100 49 1 11.9045 5.5726 -0.4747 50 1 11.6445 3.5785 -2.4577 51 1 11.6733 5.1672 -3.2601 52 1 14.2941 3.2469 -4.9939 53 1 7.7796 3.9912 0.8980 54 1 7.7798 3.9640 -0.8817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064995281.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:22 Heat of formation + Delta-G solvation = -123.345768 kcal Electronic energy + Delta-G solvation = -30288.057428 eV Core-core repulsion = 26257.465158 eV Total energy + Delta-G solvation = -4030.592270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.75367 -40.74806 -38.89570 -37.17345 -36.16817 -35.03244 -34.43732 -34.27476 -33.37486 -30.20124 -29.91390 -28.48678 -27.68154 -25.10833 -24.58663 -23.71572 -23.07017 -22.27865 -21.65193 -21.08968 -20.65962 -18.90017 -18.19887 -17.56097 -17.27648 -17.06769 -16.94290 -16.58636 -16.42591 -16.14081 -15.86623 -15.54063 -15.27092 -15.10016 -14.77393 -14.51439 -14.36888 -14.16440 -14.08117 -13.83101 -13.74606 -13.39916 -13.27200 -12.98615 -12.84552 -12.83273 -12.79951 -12.63484 -12.48027 -12.25726 -12.14095 -12.03369 -11.93722 -11.70598 -11.59918 -11.52071 -11.47822 -11.31894 -11.20491 -10.83887 -10.74698 -10.14123 -9.81990 -9.14003 -8.32638 -6.50118 1.39892 1.41580 1.55243 1.58127 1.72467 2.10148 2.30312 2.61352 2.91150 3.01844 3.59732 3.74970 3.84996 3.87872 3.99977 4.04981 4.06661 4.12049 4.21624 4.32957 4.41884 4.47847 4.53166 4.54040 4.62644 4.66193 4.70611 4.75411 4.84110 4.91100 4.92126 4.93667 5.01844 5.04195 5.07072 5.07430 5.14611 5.19143 5.22893 5.25249 5.27502 5.34679 5.42155 5.44584 5.46855 5.54607 5.69818 5.81727 5.93352 6.07045 6.52376 6.61871 6.88579 7.19933 7.23654 7.48875 8.79625 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.002163 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.107905 B =12940.345138 C =14364.156821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.115 3.885 5 N -0.713 5.713 6 C 0.514 3.486 7 O -0.592 6.592 8 C -0.088 4.088 9 H 0.136 0.864 10 C -0.106 4.106 11 C -0.098 4.098 12 C 0.045 3.955 13 H 0.039 0.961 14 C -0.139 4.139 15 N -0.489 5.489 16 C 0.038 3.962 17 C 0.461 3.539 18 O -0.590 6.590 19 N -0.708 5.708 20 C 0.269 3.731 21 C -0.556 4.556 22 H 0.085 0.915 23 C 0.001 3.999 24 N -0.933 5.933 25 Si 0.988 3.012 26 H -0.251 1.251 27 H -0.280 1.280 28 H -0.277 1.277 29 C 0.064 3.936 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.418 0.582 40 H 0.032 0.968 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.136 0.864 48 H 0.121 0.879 49 H 0.408 0.592 50 H -0.022 1.022 51 H -0.015 1.015 52 H 0.268 0.732 53 H 0.067 0.933 54 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.565 5.745 13.835 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.009 4.009 5 N -0.366 5.366 6 C 0.301 3.699 7 O -0.472 6.472 8 C -0.110 4.110 9 H 0.154 0.846 10 C -0.144 4.144 11 C -0.135 4.135 12 C -0.063 4.063 13 H 0.057 0.943 14 C -0.197 4.197 15 N -0.211 5.211 16 C -0.093 4.093 17 C 0.248 3.752 18 O -0.473 6.473 19 N -0.358 5.358 20 C 0.146 3.854 21 C -0.593 4.593 22 H 0.103 0.897 23 C -0.199 4.199 24 N -0.571 5.571 25 Si 0.810 3.190 26 H -0.174 1.174 27 H -0.206 1.206 28 H -0.203 1.203 29 C -0.064 4.064 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.256 0.744 40 H 0.051 0.949 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.154 0.846 48 H 0.139 0.861 49 H 0.243 0.757 50 H -0.004 1.004 51 H 0.003 0.997 52 H 0.077 0.923 53 H 0.085 0.915 54 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -26.692 4.947 13.450 30.296 hybrid contribution 1.717 -0.841 -1.197 2.256 sum -24.975 4.106 12.252 28.119 Atomic orbital electron populations 1.21741 0.94537 1.02097 1.02332 1.21459 0.96868 0.95824 1.02210 1.21752 0.91379 0.98451 1.03991 1.21414 0.95790 0.82641 1.01017 1.45853 1.06293 1.09672 1.74794 1.21052 0.82704 0.91632 0.74550 1.90721 1.56945 1.48200 1.51301 1.21242 0.95222 0.91633 1.02889 0.84601 1.21567 1.01973 0.96126 0.94699 1.21567 0.92226 0.95868 1.03870 1.22113 0.97163 0.95279 0.91773 0.94265 1.21841 0.99944 0.94736 1.03170 1.62522 1.07345 1.13911 1.37361 1.22522 0.88337 1.04055 0.94418 1.22929 0.82634 0.79411 0.90268 1.90574 1.62511 1.50492 1.43676 1.46362 1.06741 1.59829 1.22918 1.18456 0.92828 0.90688 0.83471 1.21669 0.90572 1.40887 1.06197 0.89691 1.26130 1.05547 0.93919 0.94260 1.70162 1.38062 1.39607 1.09308 0.85070 0.76906 0.77968 0.79024 1.17434 1.20568 1.20256 1.21843 0.94529 0.89380 1.00696 0.92005 0.92356 0.92505 0.92387 0.91875 0.89646 0.90246 0.92665 0.93632 0.74405 0.94873 0.87631 0.88510 0.90178 0.94229 0.91759 0.89657 0.84648 0.86101 0.75654 1.00423 0.99738 0.92287 0.91480 0.96176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.30 5.93 30.59 0.18 -1.12 16 3 C -0.12 -1.15 5.33 30.59 0.16 -0.98 16 4 C 0.12 2.00 5.67 86.38 0.49 2.49 16 5 N -0.71 -12.27 5.46 -463.07 -2.53 -14.80 16 6 C 0.51 13.61 7.16 87.66 0.63 14.24 16 7 O -0.59 -22.67 15.98 -3.01 -0.05 -22.72 16 8 C -0.09 -2.00 2.69 -11.49 -0.03 -2.03 16 9 H 0.14 2.16 8.14 -2.39 -0.02 2.15 16 10 C -0.11 -2.10 5.16 30.67 0.16 -1.94 16 11 C -0.10 -1.85 5.37 30.65 0.16 -1.69 16 12 C 0.04 1.22 1.95 44.94 0.09 1.31 16 13 H 0.04 1.51 5.36 -2.38 -0.01 1.50 16 14 C -0.14 -3.15 8.76 71.98 0.63 -2.52 16 15 N -0.49 -13.28 4.69 -875.65 -4.11 -17.39 16 16 C 0.04 1.07 5.30 85.56 0.45 1.53 16 17 C 0.46 19.00 7.09 87.66 0.62 19.63 16 18 O -0.59 -29.81 11.62 -3.05 -0.04 -29.85 16 19 N -0.71 -31.15 5.55 -466.80 -2.59 -33.74 16 20 C 0.27 15.44 5.43 85.63 0.46 15.90 16 21 C -0.56 -31.26 9.28 25.60 0.24 -31.02 16 22 H 0.09 4.31 7.60 -2.91 -0.02 4.29 16 23 C 0.00 0.04 5.46 84.65 0.46 0.50 16 24 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 25 Si 0.99 43.51 29.54 68.60 2.03 45.54 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 29 C 0.06 2.02 3.67 86.32 0.32 2.34 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.42 3.87 7.95 -92.70 -0.74 3.13 16 40 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 1.21 7.66 -2.39 -0.02 1.19 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.00 6.24 -2.39 -0.01 0.99 16 45 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.14 3.03 6.32 -2.39 -0.02 3.01 16 48 H 0.12 2.91 8.06 -2.38 -0.02 2.89 16 49 H 0.41 14.75 8.32 -92.71 -0.77 13.98 16 50 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 51 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 52 H 0.27 15.56 8.31 -92.70 -0.77 14.78 16 53 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 54 H 0.02 0.86 5.94 -2.38 -0.01 0.85 16 Total: -1.00 -84.33 419.84 -1.88 -86.22 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.62 Total: 28.49 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.74 Total: 16.13 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -8.94 Total: -123.81 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.08 Total: -52.57 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -84.33 -1.88 -86.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064995281.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.128 kcal (2) G-P(sol) polarization free energy of solvation -84.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds