Wall clock time and date at job start Tue Mar 31 2020 23:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 C 1.52996 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47401 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00597 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99528 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00401 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.50500 * 60.08169 * 8 6 5 10 10 C 1.53117 * 109.50454 * 300.00128 * 8 6 5 11 11 C 1.53115 * 109.16335 * 297.71492 * 10 8 6 12 12 C 1.53036 * 109.27809 * 302.34214 * 11 10 8 13 13 H 1.09004 * 109.45736 * 299.16862 * 12 11 10 14 14 C 1.52996 * 109.46495 * 179.19428 * 12 11 10 15 15 N 1.46850 * 109.52274 * 59.17739 * 12 11 10 16 16 C 1.46898 * 111.00292 * 174.16061 * 15 12 11 17 17 C 1.50694 * 109.47228 * 199.57460 * 16 15 12 18 18 O 1.21285 * 120.00338 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00224 * 180.02562 * 17 16 15 20 20 C 1.46497 * 120.00250 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46984 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00303 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00021 * 179.97438 * 21 20 19 24 24 N 1.31519 * 120.00024 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00268 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46999 * 89.99547 * 25 23 21 27 27 H 1.48500 * 109.47076 * 209.99466 * 25 23 21 28 28 H 1.48497 * 109.47229 * 330.00023 * 25 23 21 29 29 C 1.46845 * 111.19862 * 298.25983 * 15 12 11 30 30 H 1.09005 * 109.46861 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47179 * 299.99378 * 1 2 3 32 32 H 1.09000 * 109.47651 * 59.99900 * 1 2 3 33 33 H 1.09005 * 109.46890 * 240.00268 * 2 1 3 34 34 H 1.09001 * 109.47259 * 120.00469 * 2 1 3 35 35 H 1.09004 * 109.47236 * 59.99848 * 3 2 1 36 36 H 1.09001 * 109.47446 * 300.00354 * 3 2 1 37 37 H 1.09004 * 109.47428 * 60.00409 * 4 3 2 38 38 H 1.09000 * 109.47329 * 300.00020 * 4 3 2 39 39 H 0.97007 * 120.00164 * 359.97438 * 5 4 3 40 40 H 1.09004 * 109.52490 * 57.61829 * 10 8 6 41 41 H 1.09003 * 109.52249 * 177.80536 * 10 8 6 42 42 H 1.09001 * 109.50519 * 62.28668 * 11 10 8 43 43 H 1.09007 * 109.50622 * 182.40428 * 11 10 8 44 44 H 1.09001 * 109.47474 * 291.69337 * 14 12 11 45 45 H 1.09004 * 109.47060 * 51.69381 * 14 12 11 46 46 H 1.08996 * 109.47251 * 171.69180 * 14 12 11 47 47 H 1.09007 * 109.47065 * 319.56985 * 16 15 12 48 48 H 1.09002 * 109.47002 * 79.56672 * 16 15 12 49 49 H 0.97001 * 119.99774 * 359.97438 * 19 17 16 50 50 H 1.09007 * 109.46598 * 299.98763 * 20 19 17 51 51 H 1.08992 * 109.47662 * 59.99421 * 20 19 17 52 52 H 0.97000 * 120.00233 * 180.02562 * 24 23 21 53 53 H 1.08996 * 109.46497 * 301.72428 * 29 15 12 54 54 H 1.09006 * 109.46038 * 181.75328 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3833 3.0701 0.0001 7 8 6.1715 2.1482 -0.0008 8 6 5.8856 4.4909 0.0001 9 1 5.5237 5.0048 0.8906 10 6 5.3757 5.2134 -1.2498 11 6 5.9366 4.5207 -2.4948 12 6 7.4655 4.5207 -2.4274 13 1 7.8278 5.5485 -2.4020 14 6 8.0301 3.8116 -3.6599 15 7 7.9033 3.8175 -1.2148 16 6 9.3653 3.6769 -1.1866 17 6 9.7456 2.5753 -0.2313 18 8 8.8837 1.9674 0.3676 19 7 11.0437 2.2662 -0.0415 20 6 11.4135 1.1956 0.8877 21 6 12.9133 1.0514 0.9165 22 1 13.5294 1.6926 0.3037 23 6 13.4990 0.1006 1.7253 24 7 12.7488 -0.6800 2.4720 25 14 15.3580 -0.0787 1.7605 26 1 15.9207 0.8047 2.8133 27 1 15.7136 -1.4899 2.0563 28 1 15.9176 0.3065 0.4401 29 6 7.4160 4.4918 -0.0048 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9330 0.9289 -0.8909 38 1 3.9337 0.9286 0.8891 39 1 3.4279 3.5610 0.0003 40 1 4.2865 5.1774 -1.2726 41 1 5.7064 6.2519 -1.2306 42 1 5.5741 3.4935 -2.5341 43 1 5.6117 5.0563 -3.3869 44 1 7.7907 2.7494 -3.6096 45 1 7.5898 4.2410 -4.5598 46 1 9.1122 3.9391 -3.6885 47 1 9.7261 3.4321 -2.1856 48 1 9.8141 4.6142 -0.8578 49 1 11.7331 2.7526 -0.5201 50 1 11.0525 1.4408 1.8866 51 1 10.9649 0.2582 0.5591 52 1 13.1608 -1.3486 3.0412 53 1 7.7786 5.5196 0.0093 54 1 7.7823 3.9655 0.8767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066473348.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:26 Heat of formation + Delta-G solvation = -112.511355 kcal Electronic energy + Delta-G solvation = -30846.353122 eV Core-core repulsion = 26816.230667 eV Total energy + Delta-G solvation = -4030.122455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.46839 -40.25134 -38.91516 -36.97904 -36.02656 -34.95555 -34.31327 -34.14619 -33.29832 -30.10284 -29.79840 -28.42109 -27.62428 -25.10641 -24.62971 -23.74808 -22.97948 -22.21330 -21.53503 -21.10294 -20.03405 -18.88602 -17.61556 -17.47214 -17.36944 -16.89102 -16.85571 -16.51438 -16.31776 -15.87501 -15.74806 -15.40458 -14.93380 -14.89132 -14.74865 -14.46565 -14.27490 -14.15196 -13.90623 -13.73649 -13.62905 -13.42604 -13.21674 -12.92731 -12.85185 -12.80298 -12.73936 -12.58543 -12.41647 -12.36945 -12.22285 -12.06483 -11.98826 -11.76090 -11.52264 -11.48226 -11.40585 -11.12202 -10.79414 -10.44842 -10.37109 -9.87324 -9.68676 -8.97620 -8.29065 -6.46553 1.40564 1.44413 1.55687 2.00384 2.04426 2.30916 2.38363 2.52859 3.04814 3.14202 3.71103 3.86655 3.89588 3.91036 3.99257 4.01028 4.11833 4.18783 4.29772 4.35393 4.40143 4.43750 4.47288 4.47541 4.64491 4.64936 4.71886 4.78694 4.84244 4.90371 4.91003 4.95051 4.99316 5.05970 5.06996 5.11351 5.14383 5.22869 5.25258 5.25640 5.30126 5.34706 5.44357 5.49135 5.52372 5.69070 5.77555 5.88336 6.12386 6.39438 6.66194 6.83516 7.09207 7.23839 7.67183 7.73989 8.83519 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002584 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.463590 B =10834.330119 C =12713.822571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.114 4.114 4 C 0.124 3.876 5 N -0.729 5.729 6 C 0.497 3.503 7 O -0.534 6.534 8 C -0.099 4.099 9 H 0.119 0.881 10 C -0.101 4.101 11 C -0.110 4.110 12 C 0.078 3.922 13 H 0.061 0.939 14 C -0.148 4.148 15 N -0.525 5.525 16 C 0.048 3.952 17 C 0.481 3.519 18 O -0.556 6.556 19 N -0.719 5.719 20 C 0.275 3.725 21 C -0.554 4.554 22 H 0.085 0.915 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.989 3.011 26 H -0.269 1.269 27 H -0.284 1.284 28 H -0.254 1.254 29 C 0.077 3.923 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.411 0.589 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.040 0.960 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.120 0.880 48 H 0.081 0.919 49 H 0.404 0.596 50 H -0.021 1.021 51 H -0.024 1.024 52 H 0.268 0.732 53 H 0.059 0.941 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.676 17.277 -12.094 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.001 4.001 5 N -0.385 5.385 6 C 0.283 3.717 7 O -0.408 6.408 8 C -0.121 4.121 9 H 0.136 0.864 10 C -0.139 4.139 11 C -0.148 4.148 12 C -0.029 4.029 13 H 0.079 0.921 14 C -0.205 4.205 15 N -0.250 5.250 16 C -0.083 4.083 17 C 0.267 3.733 18 O -0.433 6.433 19 N -0.372 5.372 20 C 0.152 3.848 21 C -0.592 4.592 22 H 0.103 0.897 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.812 3.188 26 H -0.194 1.194 27 H -0.209 1.209 28 H -0.178 1.178 29 C -0.051 4.051 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.248 0.752 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.138 0.862 48 H 0.099 0.901 49 H 0.239 0.761 50 H -0.003 1.003 51 H -0.006 1.006 52 H 0.077 0.923 53 H 0.076 0.924 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.930 15.539 -11.556 30.013 hybrid contribution 1.393 0.069 0.571 1.507 sum -21.537 15.608 -10.985 28.777 Atomic orbital electron populations 1.21729 0.94207 1.02103 1.02418 1.21473 0.97103 0.96047 1.01911 1.21710 0.91460 0.98149 1.03803 1.21184 0.95496 0.83483 0.99892 1.45894 1.06803 1.08531 1.77230 1.21080 0.82222 0.92376 0.76034 1.90987 1.55748 1.47179 1.46869 1.21466 0.95319 0.92667 1.02612 0.86360 1.21609 1.01622 0.99609 0.91013 1.21659 0.93417 1.00464 0.99269 1.21803 0.96419 0.95810 0.88889 0.92136 1.21939 1.01123 1.00170 0.97277 1.61303 1.08581 1.52664 1.02451 1.21938 0.90367 0.96071 0.99916 1.21576 0.82137 0.85825 0.83795 1.90778 1.49627 1.53521 1.49390 1.46204 1.07365 1.37916 1.45674 1.18365 0.95060 0.84574 0.86843 1.21642 0.91112 1.19804 1.26625 0.89740 1.26170 1.05043 0.94571 0.94251 1.70175 1.38248 1.21700 1.27165 0.85097 0.76935 0.77397 0.79389 1.19391 1.20924 1.17769 1.21819 0.94412 0.96055 0.92799 0.92539 0.92158 0.91899 0.92329 0.92693 0.90201 0.89752 0.94124 0.94746 0.75249 0.88937 0.88590 0.94078 0.88446 0.94520 0.89673 0.91961 0.86235 0.90079 0.76127 1.00306 1.00611 0.92311 0.92359 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.13 -1.88 5.93 30.59 0.18 -1.70 16 3 C -0.11 -1.58 5.33 30.59 0.16 -1.42 16 4 C 0.12 2.85 5.67 86.38 0.49 3.34 16 5 N -0.73 -15.38 5.44 -463.07 -2.52 -17.89 16 6 C 0.50 14.72 5.87 87.66 0.51 15.24 16 7 O -0.53 -23.62 13.82 11.40 0.16 -23.46 16 8 C -0.10 -2.12 3.03 -11.49 -0.03 -2.16 16 9 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 10 C -0.10 -1.31 5.43 30.67 0.17 -1.14 16 11 C -0.11 -1.87 5.11 30.64 0.16 -1.71 16 12 C 0.08 1.60 2.44 44.94 0.11 1.71 16 13 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 14 C -0.15 -2.94 8.57 71.98 0.62 -2.32 16 15 N -0.52 -15.76 2.92 -875.64 -2.56 -18.32 16 16 C 0.05 1.50 5.31 85.56 0.45 1.95 16 17 C 0.48 21.88 7.53 87.65 0.66 22.54 16 18 O -0.56 -31.54 13.72 11.40 0.16 -31.38 16 19 N -0.72 -33.77 5.55 -466.79 -2.59 -36.36 16 20 C 0.27 16.48 5.43 85.63 0.46 16.95 16 21 C -0.55 -32.09 9.28 25.60 0.24 -31.86 16 22 H 0.08 4.40 7.60 -2.91 -0.02 4.37 16 23 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 24 N -0.93 -59.65 13.29 21.45 0.28 -59.36 16 25 Si 0.99 44.30 29.54 68.60 2.03 46.33 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 29 C 0.08 2.20 4.10 86.33 0.35 2.55 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.41 5.13 7.87 -92.70 -0.73 4.40 16 40 H 0.09 0.75 7.51 -2.38 -0.02 0.73 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.04 0.97 7.35 -2.39 -0.02 0.95 16 43 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.22 8.13 -2.38 -0.02 1.20 16 46 H 0.06 1.15 6.42 -2.39 -0.02 1.14 16 47 H 0.12 3.21 5.44 -2.38 -0.01 3.20 16 48 H 0.08 2.07 8.00 -2.39 -0.02 2.05 16 49 H 0.40 15.63 8.32 -92.71 -0.77 14.86 16 50 H -0.02 -1.42 8.14 -2.38 -0.02 -1.44 16 51 H -0.02 -1.64 8.14 -2.39 -0.02 -1.66 16 52 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 53 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 54 H 0.04 1.58 6.61 -2.38 -0.02 1.56 16 Total: -1.00 -90.64 419.98 0.05 -90.59 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.62 Total: 28.41 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 5.71 Total: 21.44 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -7.38 Total: -131.93 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: 0.31 Total: -54.84 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -90.64 0.05 -90.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066473348.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.920 kcal (2) G-P(sol) polarization free energy of solvation -90.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds