Wall clock time and date at job start Tue Mar 31 2020 23:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47337 * 2 1 4 4 C 1.52999 * 109.47337 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47301 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99929 * 180.02562 * 5 4 3 7 7 O 1.21287 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99804 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.53756 * 300.08913 * 8 6 5 10 10 C 1.53119 * 109.50903 * 60.19457 * 8 6 5 11 11 C 1.53120 * 109.16202 * 62.28212 * 10 8 6 12 12 C 1.53041 * 109.27703 * 57.65829 * 11 10 8 13 13 H 1.09005 * 109.45785 * 60.83329 * 12 11 10 14 14 C 1.52999 * 109.46224 * 180.80256 * 12 11 10 15 15 N 1.46847 * 109.51486 * 300.81824 * 12 11 10 16 16 C 1.46899 * 110.99299 * 185.84807 * 15 12 11 17 17 C 1.50696 * 109.47180 * 301.84381 * 16 15 12 18 18 O 1.21288 * 119.99894 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.46501 * 120.00355 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47386 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00241 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31519 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00193 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.47068 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47733 * 120.00106 * 25 23 21 28 28 H 1.48504 * 109.46773 * 240.00343 * 25 23 21 29 29 C 1.46847 * 111.20163 * 61.75514 * 15 12 11 30 30 H 1.08999 * 109.46936 * 299.99970 * 1 2 3 31 31 H 1.09005 * 109.47209 * 59.99693 * 1 2 3 32 32 H 1.09002 * 109.47389 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46936 * 240.00030 * 2 1 3 34 34 H 1.08997 * 109.46910 * 120.00311 * 2 1 3 35 35 H 1.08999 * 109.47083 * 60.00120 * 3 2 1 36 36 H 1.08997 * 109.47375 * 300.00026 * 3 2 1 37 37 H 1.09009 * 109.46935 * 60.00015 * 4 3 2 38 38 H 1.09005 * 109.47209 * 300.00307 * 4 3 2 39 39 H 0.96994 * 119.99909 * 0.02562 * 5 4 3 40 40 H 1.08993 * 109.52284 * 182.19477 * 10 8 6 41 41 H 1.09003 * 109.51872 * 302.37926 * 10 8 6 42 42 H 1.08996 * 109.50328 * 177.59853 * 11 10 8 43 43 H 1.08996 * 109.50004 * 297.72216 * 11 10 8 44 44 H 1.08998 * 109.46934 * 60.00533 * 14 12 11 45 45 H 1.08998 * 109.46580 * 179.97438 * 14 12 11 46 46 H 1.08999 * 109.47163 * 299.99897 * 14 12 11 47 47 H 1.09004 * 109.46859 * 61.84029 * 16 15 12 48 48 H 1.08996 * 109.47621 * 181.83654 * 16 15 12 49 49 H 0.97006 * 120.00015 * 359.97438 * 19 17 16 50 50 H 1.09004 * 109.47185 * 299.99846 * 20 19 17 51 51 H 1.09006 * 109.47126 * 59.99843 * 20 19 17 52 52 H 0.96993 * 120.00085 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.46448 * 178.23132 * 29 15 12 54 54 H 1.08994 * 109.45958 * 58.25497 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 5.3835 3.0698 0.0014 7 8 6.1716 2.1479 0.0014 8 6 5.8858 4.4906 0.0026 9 1 5.5217 5.0067 -0.8857 10 6 5.3800 5.2107 1.2556 11 6 5.9449 4.5154 2.4974 12 6 7.4736 4.5155 2.4251 13 1 7.8359 5.5432 2.4006 14 6 8.0421 3.8038 3.6544 15 7 7.9072 3.8145 1.2097 16 6 9.3690 3.6737 1.1766 17 6 10.0067 5.0373 1.2459 18 8 9.3118 6.0289 1.3155 19 7 11.3492 5.1550 1.2295 20 6 11.9692 6.4807 1.2963 21 6 13.4688 6.3362 1.2624 22 1 13.9155 5.3551 1.1972 23 6 14.2707 7.4567 1.3136 24 7 13.7268 8.6516 1.3915 25 14 16.1296 7.2777 1.2710 26 1 16.4865 5.8389 1.1818 27 1 16.6692 7.9962 0.0887 28 1 16.7110 7.8556 2.5093 29 6 7.4163 4.4914 0.0025 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9337 0.9284 -0.8892 38 1 3.9330 0.9286 0.8909 39 1 3.4281 3.5608 0.0016 40 1 5.7107 6.2491 1.2374 41 1 4.2909 5.1747 1.2817 42 1 5.6229 5.0492 3.3915 43 1 5.5824 3.4882 2.5357 44 1 7.6796 2.7762 3.6793 45 1 9.1309 3.8034 3.6027 46 1 7.7210 4.3245 4.5565 47 1 9.6958 3.0761 2.0277 48 1 9.6657 3.1804 0.2511 49 1 11.9050 4.3620 1.1734 50 1 11.6421 7.0781 0.4452 51 1 11.6729 6.9742 2.2219 52 1 14.2909 9.4398 1.4279 53 1 7.7797 3.9669 -0.8812 54 1 7.7789 5.5192 -0.0104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066473353.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:33 Heat of formation + Delta-G solvation = -114.372920 kcal Electronic energy + Delta-G solvation = -30671.381554 eV Core-core repulsion = 26641.178375 eV Total energy + Delta-G solvation = -4030.203179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.79268 -40.55578 -38.67368 -36.97177 -36.12458 -34.95181 -34.38353 -34.16423 -33.36038 -30.13025 -29.79125 -28.46881 -27.58973 -25.06853 -24.64834 -23.73484 -23.02724 -22.18749 -21.80227 -21.24802 -20.17355 -18.86988 -17.67331 -17.50313 -17.33504 -17.00439 -16.85939 -16.59934 -16.49643 -16.00448 -15.85347 -15.44279 -15.23129 -14.88315 -14.73938 -14.44660 -14.30112 -14.09294 -13.97959 -13.74479 -13.62012 -13.30307 -13.13955 -13.02009 -12.89263 -12.85873 -12.79028 -12.63391 -12.38507 -12.33812 -12.24986 -12.02971 -11.94821 -11.66903 -11.47360 -11.46506 -11.39856 -11.24442 -11.14240 -10.81878 -10.50789 -9.91629 -9.79051 -8.94945 -8.30918 -6.47643 1.41424 1.42174 1.55872 1.73041 1.88529 2.31471 2.33688 2.62518 2.93004 3.03579 3.69812 3.82935 3.85328 3.93603 4.00136 4.06298 4.06559 4.19491 4.28051 4.35645 4.44551 4.49269 4.53721 4.56622 4.69098 4.71599 4.73911 4.75899 4.86295 4.89973 4.93091 4.95767 4.99257 5.02403 5.09281 5.09707 5.14573 5.16475 5.21870 5.22926 5.29191 5.39535 5.44501 5.48497 5.52929 5.63594 5.70799 5.84048 6.04064 6.20396 6.63786 6.73472 6.90456 7.21867 7.48151 7.49904 8.80898 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.001940 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.804049 B =14427.051798 C =14555.987761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.123 3.877 5 N -0.726 5.726 6 C 0.524 3.476 7 O -0.553 6.553 8 C -0.100 4.100 9 H 0.120 0.880 10 C -0.106 4.106 11 C -0.104 4.104 12 C 0.051 3.949 13 H 0.052 0.948 14 C -0.140 4.140 15 N -0.488 5.488 16 C 0.042 3.958 17 C 0.467 3.533 18 O -0.585 6.585 19 N -0.709 5.709 20 C 0.269 3.731 21 C -0.557 4.557 22 H 0.081 0.919 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.984 3.016 26 H -0.255 1.255 27 H -0.278 1.278 28 H -0.278 1.278 29 C 0.063 3.937 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.411 0.589 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.065 0.935 47 H 0.120 0.880 48 H 0.113 0.887 49 H 0.406 0.594 50 H -0.015 1.015 51 H -0.014 1.014 52 H 0.268 0.732 53 H 0.065 0.935 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.054 -15.387 -1.598 30.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.001 4.001 5 N -0.380 5.380 6 C 0.310 3.690 7 O -0.430 6.430 8 C -0.121 4.121 9 H 0.138 0.862 10 C -0.144 4.144 11 C -0.142 4.142 12 C -0.056 4.056 13 H 0.070 0.930 14 C -0.197 4.197 15 N -0.210 5.210 16 C -0.090 4.090 17 C 0.254 3.746 18 O -0.468 6.468 19 N -0.359 5.359 20 C 0.146 3.854 21 C -0.595 4.595 22 H 0.099 0.901 23 C -0.195 4.195 24 N -0.569 5.569 25 Si 0.807 3.193 26 H -0.178 1.178 27 H -0.204 1.204 28 H -0.204 1.204 29 C -0.066 4.066 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.248 0.752 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.138 0.862 48 H 0.131 0.869 49 H 0.241 0.759 50 H 0.003 0.997 51 H 0.004 0.996 52 H 0.077 0.923 53 H 0.084 0.916 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -26.157 -15.669 -1.527 30.529 hybrid contribution 1.596 1.315 -0.085 2.070 sum -24.561 -14.354 -1.612 28.494 Atomic orbital electron populations 1.21753 0.94881 1.02027 1.02165 1.21441 0.96576 0.95854 1.02280 1.21749 0.92170 0.98293 1.03573 1.21297 0.95084 0.82793 1.00945 1.45928 1.06637 1.09253 1.76147 1.20535 0.82290 0.91112 0.75054 1.90700 1.56193 1.46955 1.49118 1.21433 0.95304 0.93552 1.01857 0.86218 1.21574 1.01616 0.98995 0.92200 1.21578 0.93170 1.00826 0.98606 1.22033 0.96415 0.97441 0.89759 0.92985 1.21825 1.00028 1.01074 0.96804 1.62467 1.06785 1.49575 1.02202 1.22399 0.88797 0.91691 1.06079 1.22803 0.82588 0.93572 0.75684 1.90526 1.62329 1.41663 1.52256 1.46412 1.06741 1.10511 1.72234 1.18483 0.92609 0.80525 0.93790 1.21664 0.90813 0.94420 1.52562 0.90058 1.26045 1.05188 0.94411 0.93833 1.70138 1.37933 0.98890 1.49893 0.85126 0.77335 0.79117 0.77732 1.17805 1.20392 1.20379 1.21951 0.94283 0.97447 0.92896 0.92397 0.92355 0.92483 0.91970 0.92027 0.90431 0.90384 0.93059 0.93167 0.75228 0.91530 0.88256 0.90274 0.91991 0.91527 0.93994 0.91592 0.86207 0.86883 0.75883 0.99660 0.99627 0.92276 0.91605 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.08 5.93 30.59 0.18 -0.90 16 3 C -0.12 -1.02 5.33 30.59 0.16 -0.86 16 4 C 0.12 1.81 5.67 86.38 0.49 2.30 16 5 N -0.73 -11.03 5.44 -463.04 -2.52 -13.55 16 6 C 0.52 12.01 5.87 87.66 0.51 12.52 16 7 O -0.55 -17.50 15.23 -3.05 -0.05 -17.55 16 8 C -0.10 -2.17 3.02 -11.49 -0.03 -2.21 16 9 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 10 C -0.11 -2.04 5.43 30.67 0.17 -1.87 16 11 C -0.10 -2.37 5.12 30.65 0.16 -2.22 16 12 C 0.05 1.53 1.95 44.94 0.09 1.62 16 13 H 0.05 1.97 5.36 -2.38 -0.01 1.95 16 14 C -0.14 -3.79 8.76 71.98 0.63 -3.16 16 15 N -0.49 -14.94 3.55 -875.64 -3.11 -18.04 16 16 C 0.04 1.31 5.30 85.56 0.45 1.76 16 17 C 0.47 18.89 7.09 87.66 0.62 19.51 16 18 O -0.59 -27.74 11.62 -3.05 -0.04 -27.78 16 19 N -0.71 -30.70 5.55 -466.78 -2.59 -33.29 16 20 C 0.27 14.96 5.43 85.63 0.46 15.43 16 21 C -0.56 -30.80 9.28 25.60 0.24 -30.56 16 22 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 23 C 0.00 0.27 5.46 84.65 0.46 0.73 16 24 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 25 Si 0.98 42.89 29.54 68.60 2.03 44.91 16 26 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 C 0.06 1.88 4.08 86.33 0.35 2.23 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.41 3.69 7.88 -92.71 -0.73 2.96 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.18 7.52 -2.39 -0.02 1.17 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.45 7.35 -2.39 -0.02 1.44 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.22 6.23 -2.39 -0.01 1.20 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.12 3.30 6.32 -2.38 -0.02 3.28 16 48 H 0.11 3.18 8.06 -2.39 -0.02 3.16 16 49 H 0.41 14.86 8.32 -92.70 -0.77 14.09 16 50 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 51 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 52 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 53 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 54 H 0.04 1.48 6.00 -2.39 -0.01 1.47 16 Total: -1.00 -75.89 416.42 -0.94 -76.83 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.62 Total: 30.67 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.66 Total: 13.96 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -7.93 Total: -121.05 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.08 Total: -45.32 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -75.89 -0.94 -76.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066473353.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.545 kcal (2) G-P(sol) polarization free energy of solvation -75.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds