Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46759 * 2 1 4 4 C 1.52997 * 109.47174 * 119.99939 * 2 1 3 5 5 C 1.50701 * 109.46858 * 175.00482 * 4 2 1 6 6 O 1.21274 * 120.00152 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99834 * 180.27538 * 5 4 2 8 8 C 1.46501 * 120.00359 * 179.71982 * 7 5 4 9 9 H 1.09005 * 109.46588 * 324.99896 * 8 7 5 10 10 C 1.50700 * 109.47466 * 205.00241 * 8 7 5 11 11 O 1.21284 * 119.99616 * 322.07991 * 10 8 7 12 12 N 1.34777 * 119.99995 * 142.08111 * 10 8 7 13 13 C 1.46965 * 120.59364 * 5.21342 * 12 10 8 14 14 C 1.53811 * 108.39910 * 124.75605 * 13 12 10 15 15 N 1.46968 * 108.57824 * 49.63615 * 14 13 12 16 16 C 1.36938 * 120.59484 * 124.66946 * 15 14 13 17 17 H 1.07995 * 120.00151 * 213.36344 * 16 15 14 18 18 C 1.38814 * 119.99782 * 33.36732 * 16 15 14 19 19 N 1.31613 * 120.00434 * 24.37997 * 18 16 15 20 20 Si 1.86807 * 119.99746 * 204.37967 * 18 16 15 21 21 H 1.48504 * 109.46984 * 90.00041 * 20 18 16 22 22 H 1.48496 * 109.46828 * 209.99893 * 20 18 16 23 23 H 1.48497 * 109.46893 * 330.00055 * 20 18 16 24 24 C 1.46965 * 118.81154 * 304.64385 * 15 14 13 25 25 C 1.46968 * 120.59307 * 185.49080 * 12 10 8 26 26 C 1.52999 * 109.47046 * 84.99880 * 8 7 5 27 27 C 1.52997 * 109.47085 * 175.19757 * 26 8 7 28 28 C 1.53000 * 109.47234 * 295.19375 * 26 8 7 29 29 H 1.09006 * 109.47084 * 299.99860 * 1 2 3 30 30 H 1.09003 * 109.47615 * 60.00268 * 1 2 3 31 31 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47153 * 240.00286 * 2 1 3 33 33 H 1.08996 * 109.47054 * 60.00225 * 3 2 1 34 34 H 1.09000 * 109.46972 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47216 * 299.99850 * 3 2 1 36 36 H 1.08992 * 109.47137 * 54.99971 * 4 2 1 37 37 H 1.09002 * 109.47070 * 294.99891 * 4 2 1 38 38 H 0.97005 * 119.99898 * 359.72626 * 7 5 4 39 39 H 1.08996 * 109.60943 * 244.53555 * 13 12 10 40 40 H 1.09002 * 109.60945 * 5.05293 * 13 12 10 41 41 H 1.08998 * 109.74498 * 289.84923 * 14 13 12 42 42 H 1.09000 * 109.53423 * 169.30018 * 14 13 12 43 43 H 0.96998 * 120.00507 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.61422 * 295.48555 * 24 15 14 45 45 H 1.09004 * 109.74898 * 175.05419 * 24 15 14 46 46 H 1.09000 * 109.60849 * 354.94894 * 25 12 10 47 47 H 1.08998 * 109.60716 * 115.45844 * 25 12 10 48 48 H 1.08998 * 109.46811 * 55.19576 * 26 8 7 49 49 H 1.08993 * 109.47421 * 64.02583 * 27 26 8 50 50 H 1.09001 * 109.46896 * 184.03322 * 27 26 8 51 51 H 1.09002 * 109.46910 * 304.02578 * 27 26 8 52 52 H 1.09006 * 109.46702 * 59.99926 * 28 26 8 53 53 H 1.08998 * 109.47642 * 179.97438 * 28 26 8 54 54 H 1.08993 * 109.47234 * 300.00311 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8292 1.1888 6 8 4.1449 -0.3746 0.2399 7 7 4.2145 -1.4364 2.1865 8 6 5.6740 -1.5469 2.1250 9 1 5.9842 -1.6893 1.0898 10 6 6.1240 -2.7246 2.9507 11 8 5.5677 -2.9788 3.9980 12 7 7.1446 -3.4952 2.5253 13 6 7.9017 -3.1344 1.3185 14 6 9.3924 -3.0490 1.6880 15 7 9.7641 -4.2685 2.4192 16 6 10.8011 -5.0515 1.9871 17 1 10.7633 -6.1220 2.1249 18 6 11.9008 -4.4693 1.3719 19 7 12.1989 -3.2099 1.6115 20 14 12.9578 -5.4732 0.2037 21 1 12.4288 -5.3437 -1.1778 22 1 14.3555 -4.9736 0.2475 23 1 12.9292 -6.9004 0.6130 24 6 9.0034 -4.6322 3.6229 25 6 7.5163 -4.7147 3.2565 26 6 6.3060 -0.2669 2.6754 27 6 7.8267 -0.4285 2.7228 28 6 5.9464 0.9108 1.7673 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6054 -1.7197 1.2951 37 1 1.7517 -0.1582 2.1369 38 1 3.7321 -1.8004 2.9454 39 1 7.7550 -3.8964 0.5531 40 1 7.5595 -2.1685 0.9470 41 1 9.5660 -2.1771 2.3186 42 1 9.9893 -2.9711 0.7793 43 1 12.9672 -2.8030 1.1814 44 1 9.1492 -3.8730 4.3912 45 1 9.3426 -5.5990 3.9949 46 1 6.9194 -4.7926 4.1652 47 1 7.3427 -5.5866 2.6259 48 1 5.9291 -0.0788 3.6807 49 1 8.2114 -0.5452 1.7097 50 1 8.2718 0.4547 3.1811 51 1 8.0802 -1.3101 3.3116 52 1 4.8630 1.0259 1.7335 53 1 6.3963 1.8228 2.1596 54 1 6.3233 0.7227 0.7620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130229241.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = -76.812367 kcal Electronic energy + Delta-G solvation = -32048.728710 eV Core-core repulsion = 28020.154279 eV Total energy + Delta-G solvation = -4028.574431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00214 -40.60839 -38.56665 -37.41056 -36.21309 -35.64448 -34.46256 -33.24219 -32.01614 -30.02343 -28.87908 -28.20925 -27.88652 -27.14589 -25.39032 -24.50067 -22.73010 -22.10360 -21.26331 -20.90505 -20.08731 -19.07824 -18.12628 -17.84689 -17.31030 -16.93469 -16.84241 -16.52727 -16.06225 -15.78787 -15.58644 -15.33546 -15.17458 -15.02137 -14.87221 -14.67604 -14.38583 -13.97769 -13.71182 -13.68601 -13.41590 -13.32575 -13.21789 -12.99730 -12.94683 -12.70571 -12.67071 -12.56174 -12.50590 -12.24938 -12.10903 -12.05878 -12.03426 -11.96868 -11.73095 -11.70166 -11.59438 -11.52450 -10.83217 -10.66465 -10.56380 -10.08265 -9.86674 -8.63480 -7.91667 -5.40291 1.33747 1.47213 1.50115 1.57772 1.67753 1.76015 2.35624 2.50712 3.19493 3.27552 3.54274 3.70486 3.77079 3.84004 3.93430 4.07764 4.15028 4.18677 4.22487 4.26514 4.35824 4.45082 4.49741 4.57849 4.61047 4.69593 4.72123 4.73837 4.75480 4.78787 4.79945 4.89357 4.90828 4.95779 5.03928 5.09285 5.10272 5.14477 5.16197 5.27267 5.29939 5.34758 5.42128 5.49323 5.50595 5.53525 5.59706 5.67339 6.34663 6.36395 6.52553 6.97384 7.09462 7.26523 7.76485 8.34355 9.11832 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.002761 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.307328 B =10137.045989 C =10453.398026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.152 4.152 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.557 6.557 7 N -0.712 5.712 8 C 0.137 3.863 9 H 0.103 0.897 10 C 0.515 3.485 11 O -0.572 6.572 12 N -0.592 5.592 13 C 0.089 3.911 14 C 0.167 3.833 15 N -0.604 5.604 16 C -0.275 4.275 17 H 0.064 0.936 18 C -0.033 4.033 19 N -0.921 5.921 20 Si 0.958 3.042 21 H -0.283 1.283 22 H -0.297 1.297 23 H -0.269 1.269 24 C 0.133 3.867 25 C 0.105 3.895 26 C -0.088 4.088 27 C -0.151 4.151 28 C -0.126 4.126 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.022 0.978 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.009 0.991 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.061 0.939 50 H 0.069 0.931 51 H 0.040 0.960 52 H 0.057 0.943 53 H 0.061 0.939 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.090 7.053 -0.803 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.170 4.170 5 C 0.301 3.699 6 O -0.435 6.435 7 N -0.365 5.365 8 C 0.028 3.972 9 H 0.121 0.879 10 C 0.303 3.697 11 O -0.452 6.452 12 N -0.324 5.324 13 C -0.034 4.034 14 C 0.040 3.960 15 N -0.327 5.327 16 C -0.405 4.405 17 H 0.082 0.918 18 C -0.231 4.231 19 N -0.564 5.564 20 Si 0.786 3.214 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.194 1.194 24 C 0.006 3.994 25 C -0.018 4.018 26 C -0.108 4.108 27 C -0.209 4.209 28 C -0.183 4.183 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.088 0.912 51 H 0.059 0.941 52 H 0.076 0.924 53 H 0.080 0.920 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.803 7.301 -0.982 23.014 hybrid contribution 1.195 -0.631 -0.141 1.359 sum -20.608 6.670 -1.123 21.690 Atomic orbital electron populations 1.21821 0.93311 1.02414 1.02506 1.20842 0.96310 0.96208 0.96528 1.21940 1.01740 0.95691 1.01586 1.21837 0.88946 1.04527 1.01731 1.21298 0.91384 0.76216 0.81038 1.90689 1.70973 1.47804 1.34020 1.45863 1.05348 1.60235 1.25099 1.20889 0.82884 0.92868 1.00516 0.87943 1.20768 0.79532 0.83471 0.85892 1.90626 1.57443 1.72662 1.24444 1.48046 1.31535 1.24953 1.27836 1.22678 0.93288 1.01324 0.86159 1.21070 0.90649 0.88327 0.95937 1.44171 1.35229 1.27153 1.26176 1.19345 0.95909 0.89821 1.35394 0.91849 1.25806 0.97345 0.97305 1.02629 1.70234 1.28340 1.14642 1.43185 0.85429 0.77360 0.78910 0.79685 1.20924 1.22372 1.19412 1.21351 0.90475 0.98854 0.88694 1.22092 0.96519 0.86002 0.97228 1.21370 0.95446 0.93638 1.00356 1.22072 0.94562 1.01979 1.02281 1.21761 1.01596 0.96289 0.98633 0.91643 0.92347 0.91931 0.92245 0.92330 0.92841 0.92861 0.87038 0.86777 0.74980 0.91212 0.88388 0.96011 0.92700 0.93856 0.97344 0.91008 0.89077 0.90823 0.90539 0.91964 0.91197 0.94082 0.92409 0.92006 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.80 16 2 C -0.08 -1.18 2.57 -10.79 -0.03 -1.20 16 3 C -0.15 -2.51 8.93 71.98 0.64 -1.87 16 4 C -0.13 -1.75 5.17 29.85 0.15 -1.59 16 5 C 0.51 10.67 6.10 87.66 0.54 11.21 16 6 O -0.56 -14.95 11.11 -3.01 -0.03 -14.99 16 7 N -0.71 -15.49 5.01 -446.10 -2.23 -17.73 16 8 C 0.14 3.65 1.78 44.24 0.08 3.73 16 9 H 0.10 2.91 5.41 -2.38 -0.01 2.90 16 10 C 0.52 16.28 5.55 87.66 0.49 16.76 16 11 O -0.57 -20.01 15.70 -3.04 -0.05 -20.06 16 12 N -0.59 -19.93 2.54 -817.14 -2.07 -22.00 16 13 C 0.09 3.08 5.30 86.56 0.46 3.54 16 14 C 0.17 7.33 5.17 86.56 0.45 7.77 16 15 N -0.60 -28.81 2.93 -697.34 -2.04 -30.86 16 16 C -0.27 -14.46 9.46 84.03 0.79 -13.66 16 17 H 0.06 3.29 7.94 -2.91 -0.02 3.27 16 18 C -0.03 -1.76 4.66 84.86 0.40 -1.37 16 19 N -0.92 -52.38 12.08 21.65 0.26 -52.12 16 20 Si 0.96 43.13 29.62 68.60 2.03 45.16 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 C 0.13 5.41 6.67 86.42 0.58 5.99 16 25 C 0.11 3.62 6.60 86.42 0.57 4.19 16 26 C -0.09 -2.26 2.70 -10.80 -0.03 -2.29 16 27 C -0.15 -4.38 6.85 71.98 0.49 -3.88 16 28 C -0.13 -2.98 7.79 71.98 0.56 -2.42 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 1.10 7.95 -2.39 -0.02 1.08 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 1.16 5.95 -2.39 -0.01 1.14 16 35 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.41 8.04 7.99 -92.70 -0.74 7.30 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.10 2.98 3.81 -2.39 -0.01 2.97 16 41 H 0.02 1.02 5.86 -2.39 -0.01 1.00 16 42 H 0.05 2.70 6.62 -2.39 -0.02 2.69 16 43 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.07 2.82 7.94 -2.39 -0.02 2.80 16 46 H 0.09 3.00 6.99 -2.39 -0.02 2.99 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.06 1.83 6.28 -2.39 -0.02 1.82 16 50 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.04 1.40 5.28 -2.39 -0.01 1.38 16 52 H 0.06 1.36 5.65 -2.38 -0.01 1.34 16 53 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 Total: -1.00 -64.10 400.48 2.82 -61.29 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.15 Total: 27.20 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 6.80 Total: 24.10 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -6.09 Total: -122.71 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.08 Total: -35.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.10 2.82 -61.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130229241.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.526 kcal (2) G-P(sol) polarization free energy of solvation -64.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds