Wall clock time and date at job start Tue Mar 31 2020 23:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 C 1.52998 * 109.46803 * 179.97438 * 3 2 1 5 5 N 1.46511 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.34772 * 119.99817 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00394 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00025 * 179.97438 * 6 5 4 9 9 C 1.53074 * 109.43927 * 59.79441 * 8 6 5 10 10 C 1.53200 * 109.29270 * 181.23706 * 9 8 6 11 11 N 1.46924 * 108.89456 * 305.57637 * 10 9 8 12 12 C 1.34775 * 120.63159 * 233.55608 * 11 10 9 13 13 O 1.21585 * 119.99810 * 354.96981 * 12 11 10 14 14 N 1.34773 * 119.99548 * 174.96204 * 12 11 10 15 15 C 1.46509 * 119.99865 * 185.07796 * 14 12 11 16 16 C 1.52996 * 109.47132 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46695 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47124 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00454 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99785 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00360 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47433 * 59.99826 * 22 20 18 24 24 H 1.48504 * 109.47367 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46969 * 299.99710 * 22 20 18 26 26 C 1.46925 * 118.73744 * 53.54010 * 11 10 9 27 27 C 1.53041 * 109.46210 * 179.97438 * 8 6 5 28 28 H 1.08999 * 109.46699 * 60.00263 * 1 2 3 29 29 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47049 * 300.00041 * 1 2 3 31 31 H 1.08999 * 109.47049 * 239.99959 * 2 1 3 32 32 H 1.08999 * 109.46699 * 119.99737 * 2 1 3 33 33 H 1.08999 * 109.47240 * 60.00075 * 3 2 1 34 34 H 1.08999 * 109.47167 * 299.99450 * 3 2 1 35 35 H 1.09000 * 109.47577 * 60.00347 * 4 3 2 36 36 H 1.08998 * 109.47291 * 299.99414 * 4 3 2 37 37 H 0.96994 * 119.99810 * 0.02562 * 5 4 3 38 38 H 1.08997 * 109.45886 * 299.97493 * 8 6 5 39 39 H 1.08999 * 109.39304 * 61.36325 * 9 8 6 40 40 H 1.09001 * 109.62443 * 301.25182 * 9 8 6 41 41 H 1.09003 * 109.58604 * 185.71544 * 10 9 8 42 42 H 1.09006 * 109.58223 * 65.43764 * 10 9 8 43 43 H 0.97000 * 120.00552 * 5.07719 * 14 12 11 44 44 H 1.09005 * 109.46845 * 300.00179 * 15 14 12 45 45 H 1.09003 * 109.47202 * 59.99741 * 15 14 12 46 46 H 1.08989 * 109.47520 * 299.99640 * 16 15 14 47 47 H 1.09002 * 109.46741 * 60.00308 * 16 15 14 48 48 H 1.08998 * 109.47694 * 300.00233 * 17 16 15 49 49 H 1.08998 * 109.47593 * 60.00125 * 17 16 15 50 50 H 0.96996 * 119.99972 * 180.02562 * 21 20 18 51 51 H 1.08998 * 109.59207 * 66.17170 * 26 11 10 52 52 H 1.09002 * 109.59022 * 186.46095 * 26 11 10 53 53 H 1.08996 * 109.49614 * 58.67576 * 27 8 6 54 54 H 1.08998 * 109.52116 * 298.59478 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 5.3834 3.0700 0.0014 7 8 6.1716 2.1481 0.0014 8 6 5.8858 4.4907 0.0014 9 6 5.3708 5.2131 1.2489 10 6 5.8578 6.6655 1.2299 11 7 7.3198 6.6753 1.0840 12 6 8.0926 7.3496 1.9583 13 8 7.5787 8.0318 2.8236 14 7 9.4352 7.2676 1.8734 15 6 10.2740 7.9090 2.8890 16 6 11.7484 7.6668 2.5600 17 6 12.6242 8.3373 3.6203 18 6 14.0766 8.0993 3.2959 19 1 14.3477 7.5275 2.4208 20 6 15.0592 8.6116 4.1163 21 7 14.7290 9.3084 5.1817 22 14 16.8593 8.3172 3.7139 23 1 17.1691 8.8930 2.3806 24 1 17.7095 8.9679 4.7431 25 1 17.1306 6.8573 3.6978 26 6 7.9231 5.9357 -0.0330 27 6 7.4162 4.4904 0.0022 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9338 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 3.4280 3.5609 0.0016 38 1 5.5228 5.0043 -0.8889 39 1 5.7516 4.7134 2.1396 40 1 4.2810 5.1949 1.2588 41 1 5.5804 7.1561 2.1629 42 1 5.4032 7.1924 0.3909 43 1 9.8462 6.7838 1.1399 44 1 10.0757 8.9808 2.8999 45 1 10.0457 7.4874 3.8679 46 1 11.9469 6.5952 2.5488 47 1 11.9762 8.0889 1.5811 48 1 12.4256 9.4090 3.6311 49 1 12.3965 7.9158 4.5993 50 1 15.4202 9.6691 5.7587 51 1 7.6369 6.4007 -0.9763 52 1 9.0087 5.9468 0.0653 53 1 7.7803 3.9561 -0.8752 54 1 7.7799 3.9988 0.9045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171449827.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:11 Heat of formation + Delta-G solvation = -124.414786 kcal Electronic energy + Delta-G solvation = -28949.570099 eV Core-core repulsion = 24918.931473 eV Total energy + Delta-G solvation = -4030.638627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.67937 -40.78881 -38.37973 -37.14151 -36.92015 -35.28097 -34.77974 -34.01909 -32.85926 -31.91921 -29.97489 -28.61895 -26.94744 -25.03325 -24.55691 -23.86487 -22.63433 -22.29891 -22.22422 -21.09847 -20.39854 -19.25303 -18.47284 -18.04841 -17.27881 -16.98685 -16.92396 -16.81049 -16.48718 -15.97166 -15.84837 -15.43414 -15.37720 -15.14319 -14.74356 -14.58228 -14.42784 -14.33454 -14.20371 -13.80112 -13.71631 -13.41523 -13.35526 -13.21568 -13.01338 -12.70918 -12.53740 -12.46714 -12.39491 -12.26865 -12.11408 -11.98907 -11.79872 -11.67469 -11.66000 -11.55208 -11.51066 -11.27330 -11.09866 -10.80713 -10.53852 -10.23228 -10.10016 -9.49680 -8.18427 -6.30092 1.42135 1.45344 1.53032 1.59635 1.64872 2.09267 2.22474 2.42728 2.93501 3.15265 3.55978 3.71736 3.77344 3.87936 4.01823 4.03496 4.14765 4.16616 4.22785 4.24002 4.33687 4.42375 4.43952 4.55384 4.61483 4.64320 4.69303 4.73756 4.76894 4.87531 4.90507 4.92727 4.94446 4.95830 5.02997 5.07916 5.11610 5.16644 5.26277 5.29842 5.35762 5.44110 5.46863 5.48887 5.53200 5.59224 5.71459 5.84682 5.91175 6.23349 6.55505 6.86432 6.95418 7.26103 7.39431 7.53978 8.93563 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.001526 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.742280 B =18340.813291 C =18968.586017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C 0.117 3.883 5 N -0.717 5.717 6 C 0.514 3.486 7 O -0.587 6.587 8 C -0.097 4.097 9 C -0.115 4.115 10 C 0.127 3.873 11 N -0.628 5.628 12 C 0.698 3.302 13 O -0.638 6.638 14 N -0.734 5.734 15 C 0.149 3.851 16 C -0.101 4.101 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.111 3.889 27 C -0.111 4.111 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.417 0.583 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.408 0.592 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.068 0.932 48 H -0.007 1.007 49 H -0.009 1.009 50 H 0.263 0.737 51 H 0.103 0.897 52 H 0.084 0.916 53 H 0.088 0.912 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.163 -15.432 -18.044 39.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.007 4.007 5 N -0.370 5.370 6 C 0.302 3.698 7 O -0.467 6.467 8 C -0.118 4.118 9 C -0.153 4.153 10 C 0.005 3.995 11 N -0.365 5.365 12 C 0.400 3.600 13 O -0.520 6.520 14 N -0.392 5.392 15 C 0.025 3.975 16 C -0.139 4.139 17 C -0.013 4.013 18 C -0.581 4.581 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.012 4.012 27 C -0.150 4.150 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.255 0.745 38 H 0.154 0.846 39 H 0.065 0.935 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.012 0.988 49 H 0.010 0.990 50 H 0.072 0.928 51 H 0.121 0.879 52 H 0.102 0.898 53 H 0.107 0.893 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -30.918 -15.528 -17.274 38.671 hybrid contribution 1.134 -0.003 0.282 1.169 sum -29.784 -15.531 -16.992 37.643 Atomic orbital electron populations 1.21756 0.94903 1.02018 1.02223 1.21450 0.96589 0.95955 1.02264 1.21757 0.91968 0.98289 1.03822 1.21380 0.95373 0.82789 1.01168 1.45944 1.06770 1.09576 1.74711 1.21057 0.82439 0.91762 0.74573 1.90712 1.56681 1.47990 1.51302 1.21329 0.96733 0.91655 1.02080 1.21899 1.02659 0.94598 0.96185 1.21595 0.77443 0.96596 1.03865 1.47378 1.07268 1.52825 1.29021 1.16105 0.81892 0.80279 0.81741 1.90870 1.73950 1.46838 1.40316 1.45260 1.04156 1.58926 1.30822 1.21076 0.89745 0.96551 0.90169 1.21588 0.91203 1.01047 1.00019 1.18928 0.94048 0.94619 0.93712 1.21655 0.92384 1.33742 1.10308 0.91557 1.26007 1.04383 0.94757 0.94784 1.70108 1.34953 1.36728 1.15709 0.85476 0.78542 0.78745 0.78126 1.18954 1.21104 1.19125 1.21878 0.98452 0.91069 0.89762 1.21675 0.94171 0.95936 1.03245 0.92182 0.92602 0.92455 0.91833 0.92218 0.90403 0.89939 0.92560 0.93256 0.74539 0.84622 0.93462 0.86858 0.90760 0.88336 0.75308 0.93353 0.93729 0.91617 0.91295 0.98838 0.99014 0.92814 0.87927 0.89773 0.89302 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 71.98 0.71 -0.05 16 2 C -0.12 -0.76 5.93 30.60 0.18 -0.58 16 3 C -0.12 -0.60 5.33 30.59 0.16 -0.43 16 4 C 0.12 1.23 5.67 86.38 0.49 1.72 16 5 N -0.72 -6.69 5.44 -463.05 -2.52 -9.21 16 6 C 0.51 8.13 7.16 87.66 0.63 8.76 16 7 O -0.59 -15.30 15.98 -3.05 -0.05 -15.35 16 8 C -0.10 -1.05 2.48 -11.50 -0.03 -1.08 16 9 C -0.11 -1.28 5.27 30.69 0.16 -1.12 16 10 C 0.13 1.98 6.41 86.37 0.55 2.53 16 11 N -0.63 -13.12 2.97 -836.88 -2.49 -15.61 16 12 C 0.70 21.79 8.30 179.06 1.49 23.27 16 13 O -0.64 -25.69 15.79 -3.99 -0.06 -25.75 16 14 N -0.73 -21.95 5.47 -478.52 -2.62 -24.57 16 15 C 0.15 5.57 5.68 86.38 0.49 6.06 16 16 C -0.10 -4.00 5.27 30.59 0.16 -3.84 16 17 C 0.02 1.31 4.97 29.85 0.15 1.46 16 18 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 19 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 20 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 21 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 22 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.11 1.56 6.43 86.37 0.56 2.12 16 27 C -0.11 -1.68 4.65 30.67 0.14 -1.54 16 28 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 1.02 7.86 -92.71 -0.73 0.29 16 38 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 0.49 7.53 -2.39 -0.02 0.47 16 41 H 0.07 1.57 7.03 -2.39 -0.02 1.55 16 42 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.41 9.60 5.93 -92.71 -0.55 9.05 16 44 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 48 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 49 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 50 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 51 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.08 1.19 5.56 -2.39 -0.01 1.18 16 53 H 0.09 1.28 8.07 -2.39 -0.02 1.26 16 54 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 Total: -1.00 -81.95 428.70 0.71 -81.24 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.41 Total: 13.27 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.54 Total: 7.16 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -7.34 Total: -106.80 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.11 Total: -41.10 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -81.95 0.71 -81.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449827.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.178 kcal (2) G-P(sol) polarization free energy of solvation -81.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds