Wall clock time and date at job start Tue Mar 31 2020 22:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47352 * 2 1 4 4 C 1.53005 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46604 * 55.00850 * 4 3 2 6 6 C 1.52998 * 109.47106 * 175.00382 * 4 3 2 7 7 N 1.46500 * 109.47361 * 295.00500 * 4 3 2 8 8 C 1.34774 * 120.00035 * 154.99702 * 7 4 3 9 9 O 1.21288 * 119.99928 * 0.02562 * 8 7 4 10 10 C 1.50698 * 120.00048 * 179.97438 * 8 7 4 11 11 H 1.08998 * 109.49804 * 60.00385 * 10 8 7 12 12 C 1.53043 * 109.49479 * 180.02562 * 10 8 7 13 13 C 1.53049 * 109.53424 * 181.31816 * 12 10 8 14 14 C 1.53192 * 109.31213 * 298.63495 * 13 12 10 15 15 N 1.46926 * 108.77687 * 54.63728 * 14 13 12 16 16 C 1.34768 * 120.63425 * 126.43057 * 15 14 13 17 17 O 1.21587 * 120.00547 * 174.96774 * 16 15 14 18 18 N 1.34781 * 119.99636 * 354.96821 * 16 15 14 19 19 C 1.46503 * 119.99827 * 185.07246 * 18 16 15 20 20 C 1.53007 * 109.47188 * 180.02562 * 19 18 16 21 21 C 1.50692 * 109.47028 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00434 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99851 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00198 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47027 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47349 * 119.99595 * 25 23 21 28 28 H 1.48494 * 109.47209 * 239.99447 * 25 23 21 29 29 C 1.46936 * 118.76167 * 306.41294 * 15 14 13 30 30 H 1.09002 * 109.47327 * 299.99443 * 1 2 3 31 31 H 1.09003 * 109.47302 * 59.99787 * 1 2 3 32 32 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46869 * 240.00283 * 2 1 3 34 34 H 1.08999 * 109.47547 * 120.00667 * 2 1 3 35 35 H 1.08990 * 109.47244 * 300.00630 * 3 2 1 36 36 H 1.09001 * 109.46635 * 60.00783 * 3 2 1 37 37 H 1.09000 * 109.47285 * 60.00245 * 6 4 3 38 38 H 1.08997 * 109.47577 * 180.02562 * 6 4 3 39 39 H 1.09008 * 109.46933 * 300.00241 * 6 4 3 40 40 H 0.97000 * 119.99974 * 335.00055 * 7 4 3 41 41 H 1.08996 * 109.46218 * 301.33514 * 12 10 8 42 42 H 1.08999 * 109.46126 * 61.29993 * 12 10 8 43 43 H 1.08997 * 109.49813 * 58.59096 * 13 12 10 44 44 H 1.09001 * 109.49113 * 178.65137 * 13 12 10 45 45 H 1.08992 * 109.58639 * 174.42520 * 14 13 12 46 46 H 1.09005 * 109.58647 * 294.84876 * 14 13 12 47 47 H 0.96996 * 120.00287 * 5.07569 * 18 16 15 48 48 H 1.08998 * 109.47050 * 299.99599 * 19 18 16 49 49 H 1.08992 * 109.47407 * 60.00172 * 19 18 16 50 50 H 1.09006 * 109.46388 * 299.99931 * 20 19 18 51 51 H 1.09002 * 109.46888 * 59.99693 * 20 19 18 52 52 H 0.97001 * 119.99898 * 180.02562 * 24 23 21 53 53 H 1.09003 * 109.56189 * 293.78059 * 29 15 14 54 54 H 1.09003 * 109.61246 * 173.35434 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0801 2.8794 -0.1250 7 7 4.0579 0.8588 1.2527 8 6 5.2798 0.2922 1.3009 9 8 5.9757 0.2660 0.3079 10 6 5.7819 -0.3076 2.5890 11 1 5.1096 -1.1051 2.9053 12 6 7.1851 -0.8791 2.3734 13 6 7.6827 -1.5177 3.6722 14 6 7.7591 -0.4478 4.7660 15 7 6.4488 0.2073 4.8791 16 6 5.8207 0.2858 6.0689 17 8 4.7816 0.9092 6.1678 18 7 6.3446 -0.3267 7.1491 19 6 5.6076 -0.3358 8.4152 20 6 6.4177 -1.0903 9.4715 21 6 5.6593 -1.1002 10.7736 22 1 4.6961 -0.6164 10.8413 23 6 6.1956 -1.7259 11.8790 24 7 7.3687 -2.3147 11.7967 25 14 5.2559 -1.7376 13.4934 26 1 3.9717 -1.0115 13.3239 27 1 4.9823 -3.1403 13.8968 28 1 6.0668 -1.0700 14.5430 29 6 5.8360 0.7757 3.6707 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 -0.8898 36 1 1.6767 1.9562 0.8901 37 1 3.7164 3.4690 0.7166 38 1 5.1700 2.8795 -0.1250 39 1 3.7171 3.3137 -1.0566 40 1 3.5014 0.8801 2.0469 41 1 7.1533 -1.6332 1.5870 42 1 7.8627 -0.0773 2.0802 43 1 6.9922 -2.3033 3.9792 44 1 8.6722 -1.9456 3.5113 45 1 8.0174 -0.9147 5.7164 46 1 8.5156 0.2912 4.5020 47 1 7.2095 -0.7615 7.0883 48 1 5.4436 0.6892 8.7475 49 1 4.6466 -0.8298 8.2727 50 1 6.5821 -2.1154 9.1393 51 1 7.3786 -0.5959 9.6139 52 1 7.7458 -2.7552 12.5743 53 1 6.4353 1.6150 3.3177 54 1 4.8256 1.1157 3.8981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344019330.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:45 Heat of formation + Delta-G solvation = -118.330698 kcal Electronic energy + Delta-G solvation = -30091.482799 eV Core-core repulsion = 26061.107998 eV Total energy + Delta-G solvation = -4030.374801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.75923 -40.83180 -38.53440 -37.54876 -36.60472 -34.93615 -34.49134 -33.87496 -32.72674 -31.51033 -30.95548 -27.60902 -27.16021 -25.99863 -25.21824 -23.20104 -22.92137 -22.39781 -21.66936 -21.28994 -20.54043 -19.29500 -18.48135 -17.98742 -17.35873 -17.28476 -16.70485 -16.49947 -16.30353 -15.72785 -15.47580 -15.37815 -15.28688 -15.15489 -14.94132 -14.68873 -14.36924 -14.25799 -14.16321 -14.01842 -13.67035 -13.57092 -13.21856 -13.11891 -12.94143 -12.93303 -12.55048 -12.49255 -12.42245 -12.23704 -12.00979 -11.98238 -11.87236 -11.70030 -11.63893 -11.62253 -11.52415 -11.41746 -11.15813 -10.81464 -10.59515 -10.16165 -10.08676 -9.51344 -8.22696 -6.32485 1.41767 1.42155 1.44881 1.56364 1.72672 2.11654 2.20582 2.41896 2.97662 3.12317 3.58652 3.64117 3.74763 3.79688 4.00260 4.03445 4.07981 4.11205 4.23732 4.37517 4.42498 4.46675 4.48863 4.53763 4.57250 4.60366 4.72921 4.74982 4.75703 4.81308 4.88365 4.89104 4.90113 4.99486 5.02919 5.05959 5.14036 5.26092 5.27968 5.30365 5.32372 5.37152 5.45261 5.47273 5.53821 5.57955 5.61218 5.79964 5.91855 6.18810 6.49883 6.80853 6.97027 7.20101 7.36716 7.54318 8.89331 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.002082 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.486694 B =13445.178952 C =14655.386357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C 0.139 3.861 5 H 0.072 0.928 6 C -0.160 4.160 7 N -0.715 5.715 8 C 0.527 3.473 9 O -0.571 6.571 10 C -0.116 4.116 11 H 0.105 0.895 12 C -0.093 4.093 13 C -0.127 4.127 14 C 0.102 3.898 15 N -0.624 5.624 16 C 0.702 3.298 17 O -0.633 6.633 18 N -0.734 5.734 19 C 0.160 3.840 20 C 0.024 3.976 21 C -0.543 4.543 22 H 0.059 0.941 23 C 0.006 3.994 24 N -0.926 5.926 25 Si 0.964 3.036 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.278 1.278 29 C 0.145 3.855 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.409 0.591 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.404 0.596 48 H 0.043 0.957 49 H 0.045 0.955 50 H 0.009 0.991 51 H 0.007 0.993 52 H 0.265 0.735 53 H 0.074 0.926 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 5.169 -26.617 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C 0.035 3.965 5 H 0.090 0.910 6 C -0.218 4.218 7 N -0.367 5.367 8 C 0.313 3.687 9 O -0.450 6.450 10 C -0.138 4.138 11 H 0.123 0.877 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.020 4.020 15 N -0.361 5.361 16 C 0.404 3.596 17 O -0.515 6.515 18 N -0.391 5.391 19 C 0.036 3.964 20 C -0.014 4.014 21 C -0.582 4.582 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.566 5.566 25 Si 0.789 3.211 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.203 1.203 29 C 0.022 3.978 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.245 0.755 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.242 0.758 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.027 0.973 51 H 0.026 0.974 52 H 0.074 0.926 53 H 0.093 0.907 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.491 5.500 -27.145 28.236 hybrid contribution -0.064 -0.381 1.343 1.397 sum -5.556 5.120 -25.802 26.885 Atomic orbital electron populations 1.21765 0.95162 1.01811 1.02211 1.21521 0.96365 0.96643 1.01764 1.21898 0.92134 0.97525 1.04219 1.21054 0.94727 0.94263 0.86426 0.91017 1.22140 1.00726 0.95792 1.03159 1.46193 1.17378 1.58727 1.14421 1.20547 0.81351 0.77082 0.89724 1.90681 1.57179 1.59329 1.37789 1.21707 1.00434 0.99447 0.92217 0.87718 1.21278 0.93425 1.00774 0.97590 1.21915 1.03547 0.97362 0.93692 1.21941 0.83541 0.96020 1.00531 1.47218 1.21639 1.61509 1.05780 1.16019 0.82969 0.79612 0.81046 1.90842 1.26723 1.48776 1.85140 1.45428 1.24356 1.59201 1.10090 1.21084 0.94535 0.99340 0.81441 1.19129 0.95036 0.94743 0.92464 1.21479 1.05164 1.35423 0.96116 0.92269 1.25861 0.95911 0.94705 1.02751 1.70062 1.18292 1.36713 1.31493 0.85405 0.78833 0.78016 0.78839 1.18945 1.20256 1.20349 1.21290 1.00119 0.94195 0.82227 0.92537 0.92060 0.92919 0.92482 0.92617 0.89034 0.90503 0.91736 0.94095 0.90186 0.75468 0.91017 0.91206 0.91635 0.87931 0.89760 0.89480 0.75770 0.93867 0.93627 0.97260 0.97418 0.92590 0.90731 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.43 5.82 30.59 0.18 -1.25 16 3 C -0.12 -1.18 4.75 30.60 0.15 -1.03 16 4 C 0.14 1.94 2.57 44.99 0.12 2.06 16 5 H 0.07 1.26 7.58 -2.39 -0.02 1.24 16 6 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 7 N -0.72 -11.00 4.43 -442.53 -1.96 -12.96 16 8 C 0.53 10.43 7.12 87.66 0.62 11.06 16 9 O -0.57 -15.02 15.64 -3.06 -0.05 -15.07 16 10 C -0.12 -2.09 2.67 -11.46 -0.03 -2.12 16 11 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 12 C -0.09 -1.57 4.46 30.62 0.14 -1.43 16 13 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 14 C 0.10 1.86 6.43 86.36 0.56 2.42 16 15 N -0.62 -15.33 2.97 -836.90 -2.49 -17.81 16 16 C 0.70 23.81 8.29 179.06 1.49 25.29 16 17 O -0.63 -26.05 15.78 -3.99 -0.06 -26.12 16 18 N -0.73 -25.59 5.47 -478.53 -2.62 -28.20 16 19 C 0.16 6.86 5.62 86.38 0.49 7.34 16 20 C 0.02 1.19 5.09 29.85 0.15 1.34 16 21 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 22 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 23 C 0.01 0.36 5.46 84.65 0.46 0.82 16 24 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 25 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 29 C 0.15 3.04 5.56 86.36 0.48 3.52 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.72 7.75 -2.39 -0.02 0.71 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.41 5.30 8.15 -92.71 -0.76 4.54 16 41 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 42 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.55 5.57 -2.39 -0.01 1.54 16 46 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.40 12.17 5.93 -92.71 -0.55 11.62 16 48 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 51 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 53 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.09 2.02 6.64 -2.39 -0.02 2.00 16 Total: -1.00 -70.62 427.30 1.31 -69.31 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.43 Total: 24.86 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 6.61 Total: 14.13 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -6.78 Total: -112.40 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.11 Total: -41.19 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.62 1.31 -69.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344019330.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.021 kcal (2) G-P(sol) polarization free energy of solvation -70.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds