Wall clock time and date at job start Tue Mar 31 2020 22:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47004 * 2 1 4 4 C 1.53007 * 109.46834 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47228 * 304.99924 * 4 3 2 6 6 C 1.53005 * 109.46814 * 184.99923 * 4 3 2 7 7 N 1.46496 * 109.47008 * 65.00216 * 4 3 2 8 8 C 1.34785 * 119.99516 * 204.99757 * 7 4 3 9 9 O 1.21280 * 120.00148 * 0.02562 * 8 7 4 10 10 C 1.50703 * 119.99301 * 179.97438 * 8 7 4 11 11 H 1.08998 * 109.49803 * 299.93010 * 10 8 7 12 12 C 1.53048 * 109.49072 * 179.84011 * 10 8 7 13 13 C 1.53047 * 109.53319 * 178.68289 * 12 10 8 14 14 C 1.52758 * 109.38215 * 61.23979 * 13 12 10 15 15 N 1.46926 * 109.00965 * 305.58573 * 14 13 12 16 16 C 1.34776 * 120.62780 * 233.58570 * 15 14 13 17 17 O 1.21591 * 119.99764 * 184.74601 * 16 15 14 18 18 N 1.34772 * 120.00424 * 4.74720 * 16 15 14 19 19 C 1.46500 * 120.00221 * 175.19611 * 18 16 15 20 20 C 1.52996 * 109.47047 * 179.72255 * 19 18 16 21 21 C 1.50703 * 109.47146 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99812 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00156 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99941 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99903 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46811 * 90.00162 * 25 23 21 27 27 H 1.48501 * 109.47065 * 209.99965 * 25 23 21 28 28 H 1.48500 * 109.47095 * 329.99871 * 25 23 21 29 29 C 1.46920 * 118.73776 * 53.31087 * 15 14 13 30 30 H 1.08998 * 109.47182 * 59.99987 * 1 2 3 31 31 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47282 * 299.99657 * 1 2 3 33 33 H 1.08994 * 109.47023 * 239.99858 * 2 1 3 34 34 H 1.09002 * 109.46844 * 120.00353 * 2 1 3 35 35 H 1.09003 * 109.47329 * 60.00318 * 3 2 1 36 36 H 1.08992 * 109.47190 * 299.99561 * 3 2 1 37 37 H 1.09002 * 109.46848 * 60.00504 * 6 4 3 38 38 H 1.09001 * 109.46973 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.47224 * 300.00004 * 6 4 3 40 40 H 0.96996 * 120.00464 * 24.99512 * 7 4 3 41 41 H 1.09000 * 109.46199 * 298.70161 * 12 10 8 42 42 H 1.08995 * 109.46007 * 58.67771 * 12 10 8 43 43 H 1.09003 * 109.49319 * 181.31532 * 13 12 10 44 44 H 1.08997 * 109.49718 * 301.38122 * 13 12 10 45 45 H 1.09001 * 109.50795 * 185.70360 * 14 13 12 46 46 H 1.09002 * 109.42938 * 65.42476 * 14 13 12 47 47 H 0.97001 * 119.99883 * 354.91379 * 18 16 15 48 48 H 1.09003 * 109.46563 * 299.72043 * 19 18 16 49 49 H 1.08997 * 109.47523 * 59.72007 * 19 18 16 50 50 H 1.08994 * 109.47419 * 299.99632 * 20 19 18 51 51 H 1.09005 * 109.47442 * 60.00130 * 20 19 18 52 52 H 0.96998 * 119.99741 * 180.02562 * 24 23 21 53 53 H 1.09001 * 109.58681 * 66.43238 * 29 15 14 54 54 H 1.08997 * 109.58797 * 186.85753 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0799 2.8795 0.1264 7 7 4.0588 0.8585 -1.2509 8 6 5.2809 0.2920 -1.2980 9 8 5.9756 0.2651 -0.3042 10 6 5.7834 -0.3092 -2.5853 11 1 5.1119 -1.1078 -2.9004 12 6 7.1880 -0.8774 -2.3694 13 6 7.6862 -1.5173 -3.6674 14 6 7.7573 -0.4541 -4.7620 15 7 6.4481 0.2030 -4.8766 16 6 5.8187 0.2769 -6.0661 17 8 4.7779 0.8976 -6.1655 18 7 6.3429 -0.3370 -7.1452 19 6 5.6074 -0.3461 -8.4122 20 6 6.4205 -1.0969 -9.4685 21 6 5.6636 -1.1068 -10.7717 22 1 4.6989 -0.6260 -10.8395 23 6 6.2027 -1.7296 -11.8774 24 7 7.3772 -2.3155 -11.7947 25 14 5.2642 -1.7424 -13.4924 26 1 5.6380 -0.5479 -14.2916 27 1 5.6033 -2.9724 -14.2523 28 1 3.8051 -1.7171 -13.2173 29 6 5.8355 0.7725 -3.6688 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 3.7162 3.3139 1.0576 38 1 5.1699 2.8794 0.1273 39 1 3.7170 3.4688 -0.7157 40 1 3.5030 0.8796 -2.0455 41 1 7.8641 -0.0736 -2.0780 42 1 7.1581 -1.6302 -1.5818 43 1 8.6770 -1.9423 -3.5065 44 1 6.9975 -2.3051 -3.9723 45 1 8.0139 -0.9252 -5.7109 46 1 8.5154 0.2844 -4.5015 47 1 7.2091 -0.7694 -7.0842 48 1 4.6476 -0.8431 -8.2714 49 1 5.4407 0.6790 -8.7429 50 1 7.3803 -0.6000 -9.6093 51 1 6.5872 -2.1221 -9.1379 52 1 7.7566 -2.7534 -12.5726 53 1 6.4337 1.6133 -3.3173 54 1 4.8246 1.1105 -3.8964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344019337.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:49 Heat of formation + Delta-G solvation = -118.298850 kcal Electronic energy + Delta-G solvation = -30092.129023 eV Core-core repulsion = 26061.755603 eV Total energy + Delta-G solvation = -4030.373420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.76402 -40.83237 -38.54377 -37.55235 -36.60514 -34.93507 -34.49224 -33.87382 -32.74388 -31.51119 -30.96052 -27.60923 -27.16079 -26.00023 -25.21690 -23.20007 -22.92070 -22.39901 -21.67049 -21.29086 -20.53868 -19.29616 -18.47752 -17.98622 -17.35940 -17.28467 -16.70503 -16.50113 -16.30454 -15.72931 -15.47679 -15.38578 -15.28607 -15.15389 -14.94366 -14.68876 -14.37602 -14.25165 -14.16453 -14.01800 -13.67520 -13.57278 -13.22245 -13.12249 -12.93338 -12.92450 -12.54887 -12.50223 -12.42234 -12.22612 -12.00686 -11.98239 -11.87241 -11.70130 -11.63766 -11.62214 -11.52501 -11.43075 -11.16245 -10.81501 -10.58815 -10.16236 -10.08654 -9.51454 -8.22407 -6.32303 1.41770 1.43619 1.44934 1.55165 1.72496 2.11634 2.20591 2.42014 2.97592 3.12539 3.58440 3.64154 3.74768 3.79633 4.00637 4.03626 4.07951 4.11221 4.23631 4.37527 4.42519 4.46790 4.48988 4.53737 4.57228 4.60346 4.73009 4.74988 4.75700 4.81333 4.88371 4.89109 4.90087 4.99499 5.02780 5.05916 5.14142 5.26110 5.27940 5.30383 5.32346 5.37114 5.45261 5.47290 5.53746 5.57964 5.61290 5.79949 5.91844 6.18850 6.49867 6.80752 6.96977 7.20076 7.36810 7.54283 8.89393 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.002082 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.612336 B =13447.733233 C =14659.376478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C 0.139 3.861 5 H 0.072 0.928 6 C -0.160 4.160 7 N -0.716 5.716 8 C 0.527 3.473 9 O -0.571 6.571 10 C -0.116 4.116 11 H 0.105 0.895 12 C -0.093 4.093 13 C -0.127 4.127 14 C 0.102 3.898 15 N -0.624 5.624 16 C 0.702 3.298 17 O -0.633 6.633 18 N -0.734 5.734 19 C 0.160 3.840 20 C 0.024 3.976 21 C -0.544 4.544 22 H 0.059 0.941 23 C 0.007 3.993 24 N -0.926 5.926 25 Si 0.964 3.036 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.266 1.266 29 C 0.145 3.855 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.409 0.591 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.404 0.596 48 H 0.045 0.955 49 H 0.043 0.957 50 H 0.007 0.993 51 H 0.009 0.991 52 H 0.265 0.735 53 H 0.075 0.925 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 5.191 26.606 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C 0.035 3.965 5 H 0.090 0.910 6 C -0.218 4.218 7 N -0.367 5.367 8 C 0.313 3.687 9 O -0.450 6.450 10 C -0.138 4.138 11 H 0.123 0.877 12 C -0.131 4.131 13 C -0.166 4.166 14 C -0.020 4.020 15 N -0.361 5.361 16 C 0.404 3.596 17 O -0.515 6.515 18 N -0.391 5.391 19 C 0.036 3.964 20 C -0.013 4.013 21 C -0.583 4.583 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.565 5.565 25 Si 0.789 3.211 26 H -0.199 1.199 27 H -0.206 1.206 28 H -0.190 1.190 29 C 0.022 3.978 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.242 0.758 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.026 0.974 51 H 0.027 0.973 52 H 0.074 0.926 53 H 0.093 0.907 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.499 5.513 27.134 28.230 hybrid contribution -0.067 -0.369 -1.343 1.394 sum -5.566 5.144 25.792 26.882 Atomic orbital electron populations 1.21765 0.95163 1.01811 1.02211 1.21521 0.96364 0.96645 1.01763 1.21898 0.92135 0.97523 1.04219 1.21057 0.94715 0.94260 0.86440 0.91015 1.22141 1.00726 0.95791 1.03158 1.46195 1.17373 1.58740 1.14420 1.20547 0.81347 0.77083 0.89721 1.90679 1.57242 1.59333 1.37712 1.21712 1.00422 0.99460 0.92226 0.87720 1.21278 0.93398 1.00789 0.97595 1.21844 1.03583 0.97423 0.93705 1.21849 0.83599 0.96059 1.00525 1.47213 1.21639 1.61427 1.05852 1.16017 0.82980 0.79590 0.81054 1.90843 1.26591 1.48932 1.85115 1.45427 1.24306 1.59220 1.10112 1.21084 0.94555 0.99344 0.81414 1.19123 0.95016 0.94755 0.92454 1.21455 1.05088 1.35679 0.96072 0.92258 1.25860 0.95920 0.94668 1.02756 1.70055 1.18180 1.36812 1.31485 0.85458 0.79095 0.77729 0.78840 1.19856 1.20594 1.19031 1.21289 1.00123 0.94203 0.82229 0.92544 0.92921 0.92053 0.92621 0.92481 0.89039 0.90495 0.90187 0.94095 0.91734 0.75470 0.91198 0.91013 0.87887 0.91656 0.89768 0.89507 0.75768 0.93634 0.93853 0.97432 0.97264 0.92590 0.90711 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -1.43 5.82 30.59 0.18 -1.26 16 3 C -0.12 -1.18 4.75 30.59 0.15 -1.04 16 4 C 0.14 1.94 2.58 45.00 0.12 2.06 16 5 H 0.07 1.26 7.58 -2.39 -0.02 1.24 16 6 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 7 N -0.72 -11.01 4.44 -442.51 -1.96 -12.97 16 8 C 0.53 10.44 7.12 87.66 0.62 11.06 16 9 O -0.57 -15.02 15.64 -3.03 -0.05 -15.07 16 10 C -0.12 -2.09 2.68 -11.46 -0.03 -2.12 16 11 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 12 C -0.09 -1.57 4.46 30.63 0.14 -1.43 16 13 C -0.13 -1.93 6.06 30.53 0.19 -1.75 16 14 C 0.10 1.86 6.40 86.22 0.55 2.41 16 15 N -0.62 -15.33 2.98 -837.77 -2.49 -17.82 16 16 C 0.70 23.81 8.30 179.06 1.49 25.30 16 17 O -0.63 -26.05 15.78 -4.00 -0.06 -26.11 16 18 N -0.73 -25.59 5.47 -478.54 -2.62 -28.20 16 19 C 0.16 6.86 5.62 86.38 0.49 7.34 16 20 C 0.02 1.20 5.09 29.85 0.15 1.35 16 21 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 22 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 23 C 0.01 0.37 5.46 84.65 0.46 0.84 16 24 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 25 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 C 0.15 3.03 5.56 86.36 0.48 3.51 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.72 7.75 -2.39 -0.02 0.71 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.41 5.30 8.14 -92.71 -0.75 4.55 16 41 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 42 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.55 5.57 -2.39 -0.01 1.54 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.40 12.17 5.93 -92.71 -0.55 11.62 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 52 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 53 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.09 2.01 6.63 -2.39 -0.02 2.00 16 Total: -1.00 -70.56 427.25 1.30 -69.27 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.43 Total: 24.98 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.60 Total: 14.09 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -6.79 Total: -112.41 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.11 Total: -41.18 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.56 1.30 -69.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344019337.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.032 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds