Wall clock time and date at job start Tue Mar 31 2020 22:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46829 * 2 1 4 4 C 1.53003 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47299 * 54.99161 * 4 3 2 6 6 C 1.53002 * 109.47256 * 174.99683 * 4 3 2 7 7 N 1.46501 * 109.46578 * 294.99434 * 4 3 2 8 8 C 1.34779 * 120.00092 * 155.00231 * 7 4 3 9 9 O 1.21275 * 119.99574 * 359.97438 * 8 7 4 10 10 C 1.50694 * 120.00223 * 179.97438 * 8 7 4 11 11 H 1.09002 * 109.52664 * 299.91929 * 10 8 7 12 12 C 1.53038 * 109.50018 * 179.83559 * 10 8 7 13 13 C 1.53042 * 109.53898 * 178.68269 * 12 10 8 14 14 C 1.53194 * 109.30810 * 61.37036 * 13 12 10 15 15 N 1.46954 * 108.88693 * 305.43915 * 14 13 12 16 16 C 1.34783 * 120.65545 * 233.53479 * 15 14 13 17 17 O 1.21579 * 120.00024 * 174.58635 * 16 15 14 18 18 N 1.34780 * 119.99689 * 354.59272 * 16 15 14 19 19 C 1.46496 * 119.99968 * 184.97889 * 18 16 15 20 20 C 1.52999 * 109.47196 * 179.97438 * 19 18 16 21 21 C 1.50704 * 109.47433 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99650 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00451 * 179.97438 * 21 20 19 24 24 N 1.31510 * 120.00194 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99886 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47216 * 89.99737 * 25 23 21 27 27 H 1.48494 * 109.47477 * 209.99687 * 25 23 21 28 28 H 1.48505 * 109.46887 * 330.00060 * 25 23 21 29 29 C 1.46923 * 118.71996 * 53.36122 * 15 14 13 30 30 H 1.09001 * 109.47266 * 300.00310 * 1 2 3 31 31 H 1.09001 * 109.47118 * 60.00696 * 1 2 3 32 32 H 1.09008 * 109.46998 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47614 * 239.99231 * 2 1 3 34 34 H 1.09001 * 109.47118 * 119.99304 * 2 1 3 35 35 H 1.08991 * 109.47650 * 59.99254 * 3 2 1 36 36 H 1.09001 * 109.46702 * 299.99558 * 3 2 1 37 37 H 1.08998 * 109.47023 * 179.97438 * 6 4 3 38 38 H 1.09007 * 109.46597 * 299.99724 * 6 4 3 39 39 H 1.08995 * 109.47175 * 59.99208 * 6 4 3 40 40 H 0.97001 * 119.99887 * 334.99909 * 7 4 3 41 41 H 1.08993 * 109.45987 * 298.70863 * 12 10 8 42 42 H 1.08999 * 109.45396 * 58.67973 * 12 10 8 43 43 H 1.08996 * 109.49402 * 181.31709 * 13 12 10 44 44 H 1.08994 * 109.49862 * 301.38108 * 13 12 10 45 45 H 1.08998 * 109.58767 * 65.15523 * 14 13 12 46 46 H 1.09006 * 109.58261 * 185.57684 * 14 13 12 47 47 H 0.97003 * 119.99848 * 4.97352 * 18 16 15 48 48 H 1.09002 * 109.47007 * 299.99501 * 19 18 16 49 49 H 1.08999 * 109.47801 * 59.99484 * 19 18 16 50 50 H 1.08996 * 109.47151 * 299.99924 * 20 19 18 51 51 H 1.09000 * 109.47443 * 60.00031 * 20 19 18 52 52 H 0.97002 * 120.00299 * 180.02562 * 24 23 21 53 53 H 1.08996 * 109.59420 * 186.77902 * 29 15 14 54 54 H 1.09007 * 109.58599 * 66.49388 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0799 2.8797 -0.1264 7 7 4.0587 0.8588 1.2510 8 6 5.2808 0.2923 1.2983 9 8 5.9755 0.2654 0.3047 10 6 5.7838 -0.3077 2.5859 11 1 5.8225 0.4626 3.3561 12 6 7.1850 -0.8833 2.3682 13 6 7.7100 -1.4636 3.6834 14 6 6.7872 -2.5977 4.1408 15 7 5.4097 -2.0907 4.2120 16 6 4.6847 -2.2270 5.3400 17 8 3.5837 -1.7177 5.4203 18 7 5.1804 -2.9279 6.3791 19 6 4.3510 -3.1689 7.5623 20 6 5.1462 -3.9825 8.5854 21 6 4.2932 -4.2299 9.8030 22 1 3.2847 -3.8456 9.8428 23 6 4.7999 -4.9476 10.8655 24 7 4.0557 -5.1631 11.9281 25 14 6.5441 -5.6129 10.7962 26 1 7.4812 -4.6038 11.3520 27 1 6.6299 -6.8613 11.5957 28 1 6.9078 -5.9022 9.3858 29 6 4.8391 -1.4286 3.0310 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8934 -0.5137 0.8901 35 1 1.6766 1.9564 0.8898 36 1 1.6766 1.9563 -0.8901 37 1 5.1699 2.8797 -0.1264 38 1 3.7161 3.3140 -1.0577 39 1 3.7168 3.4690 0.7155 40 1 3.5029 0.8801 2.0456 41 1 7.1412 -1.6705 1.6157 42 1 7.8535 -0.0924 2.0280 43 1 8.7171 -1.8523 3.5331 44 1 7.7312 -0.6823 4.4430 45 1 6.8356 -3.4190 3.4259 46 1 7.0991 -2.9481 5.1247 47 1 6.0864 -3.2728 6.3433 48 1 4.0606 -2.2151 8.0028 49 1 3.4578 -3.7227 7.2734 50 1 5.4363 -4.9362 8.1448 51 1 6.0396 -3.4291 8.8746 52 1 4.4123 -5.6677 12.6759 53 1 3.8657 -1.0078 3.2825 54 1 4.7266 -2.1534 2.2246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344019342.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:53 Heat of formation + Delta-G solvation = -116.181669 kcal Electronic energy + Delta-G solvation = -30235.634822 eV Core-core repulsion = 26205.353210 eV Total energy + Delta-G solvation = -4030.281612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76121 -40.83926 -38.53825 -37.55602 -36.64594 -34.90709 -34.48778 -33.91467 -32.75510 -31.82325 -31.06018 -27.61634 -27.27252 -25.96761 -25.15584 -23.19142 -22.68960 -22.40405 -21.67116 -21.30040 -20.54148 -19.26333 -18.95160 -17.99588 -17.45873 -17.16624 -16.81597 -16.35115 -16.18135 -15.73424 -15.44473 -15.42049 -15.30515 -15.18870 -15.02553 -14.69468 -14.63306 -14.35897 -14.14614 -14.03275 -13.65134 -13.57625 -13.31122 -13.19759 -13.02460 -12.93789 -12.56529 -12.40370 -12.15517 -12.14918 -12.00684 -11.96526 -11.87578 -11.73969 -11.67728 -11.62694 -11.53242 -11.47806 -11.20689 -10.81799 -10.76979 -10.19189 -10.09221 -9.52113 -8.27972 -6.35079 1.40671 1.43199 1.43732 1.54489 1.70460 2.10881 2.20914 2.38616 2.95560 3.07096 3.58195 3.64254 3.74248 3.80630 4.01362 4.01559 4.07959 4.11787 4.23876 4.34925 4.37243 4.46823 4.47550 4.48419 4.54141 4.59865 4.72182 4.74569 4.76003 4.78149 4.80846 4.88869 4.90316 4.98494 5.02344 5.05370 5.14258 5.17829 5.26469 5.27343 5.30084 5.37412 5.43123 5.45049 5.45597 5.48914 5.57561 5.68359 5.90424 6.24960 6.49554 6.72067 6.97356 7.19821 7.29264 7.54630 8.88694 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.002201 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.216212 B =12718.862805 C =14071.310787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C 0.139 3.861 5 H 0.072 0.928 6 C -0.159 4.159 7 N -0.716 5.716 8 C 0.526 3.474 9 O -0.571 6.571 10 C -0.115 4.115 11 H 0.104 0.896 12 C -0.094 4.094 13 C -0.127 4.127 14 C 0.101 3.899 15 N -0.624 5.624 16 C 0.702 3.298 17 O -0.633 6.633 18 N -0.732 5.732 19 C 0.164 3.836 20 C -0.012 4.012 21 C -0.537 4.537 22 H 0.029 0.971 23 C 0.003 3.997 24 N -0.951 5.951 25 Si 0.959 3.041 26 H -0.265 1.265 27 H -0.288 1.288 28 H -0.235 1.235 29 C 0.144 3.856 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.409 0.591 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.407 0.593 48 H 0.042 0.958 49 H 0.042 0.958 50 H 0.037 0.963 51 H 0.035 0.965 52 H 0.267 0.733 53 H 0.086 0.914 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 12.547 -28.035 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C 0.035 3.965 5 H 0.090 0.910 6 C -0.217 4.217 7 N -0.368 5.368 8 C 0.312 3.688 9 O -0.450 6.450 10 C -0.138 4.138 11 H 0.122 0.878 12 C -0.132 4.132 13 C -0.165 4.165 14 C -0.021 4.021 15 N -0.361 5.361 16 C 0.403 3.597 17 O -0.515 6.515 18 N -0.390 5.390 19 C 0.040 3.960 20 C -0.049 4.049 21 C -0.575 4.575 22 H 0.048 0.952 23 C -0.194 4.194 24 N -0.591 5.591 25 Si 0.781 3.219 26 H -0.190 1.190 27 H -0.214 1.214 28 H -0.158 1.158 29 C 0.020 3.980 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.246 0.754 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.055 0.945 51 H 0.053 0.947 52 H 0.076 0.924 53 H 0.105 0.895 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.061 12.793 -28.524 31.668 hybrid contribution 0.243 -0.440 1.016 1.133 sum 5.304 12.353 -27.508 30.617 Atomic orbital electron populations 1.21768 0.95307 1.01727 1.02191 1.21523 0.96279 0.96772 1.01757 1.21891 0.92197 0.97387 1.04222 1.21058 0.94650 0.94319 0.86473 0.91016 1.22132 1.00668 0.95719 1.03188 1.46208 1.17308 1.58817 1.14436 1.20576 0.81335 0.77145 0.89724 1.90678 1.57117 1.59685 1.37526 1.21706 0.97986 0.98857 0.95223 0.87761 1.21285 0.93201 1.00939 0.97740 1.21916 0.99815 0.97977 0.96772 1.21979 0.79505 0.97363 1.03254 1.47222 1.15335 1.62084 1.11455 1.16020 0.83709 0.79318 0.80632 1.90858 1.22728 1.55002 1.82904 1.45323 1.18539 1.58126 1.16969 1.20881 0.93068 0.98476 0.83569 1.19641 0.96086 0.96219 0.92994 1.21240 1.00341 1.34742 1.01223 0.95239 1.26083 1.03133 0.95803 0.94398 1.70075 1.39591 1.41943 1.07464 0.85545 0.78429 0.77839 0.80100 1.19017 1.21408 1.15832 1.21285 0.96558 0.93789 0.86330 0.92625 0.91915 0.93145 0.92402 0.92742 0.90493 0.88993 0.94116 0.90181 0.91676 0.75491 0.91228 0.91116 0.87773 0.91562 0.89479 0.89235 0.75422 0.93983 0.94004 0.94512 0.94676 0.92381 0.89537 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.55 5.82 30.60 0.18 -1.38 16 3 C -0.12 -1.18 4.75 30.60 0.15 -1.04 16 4 C 0.14 1.89 2.58 44.99 0.12 2.00 16 5 H 0.07 1.24 7.58 -2.39 -0.02 1.22 16 6 C -0.16 -2.00 9.48 71.98 0.68 -1.32 16 7 N -0.72 -10.69 4.43 -442.53 -1.96 -12.65 16 8 C 0.53 10.02 7.12 87.65 0.62 10.65 16 9 O -0.57 -14.60 15.64 -3.01 -0.05 -14.64 16 10 C -0.12 -1.95 2.68 -11.46 -0.03 -1.98 16 11 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 12 C -0.09 -1.43 4.46 30.62 0.14 -1.30 16 13 C -0.13 -1.59 6.08 30.67 0.19 -1.41 16 14 C 0.10 1.54 6.38 86.36 0.55 2.09 16 15 N -0.62 -13.95 2.98 -836.81 -2.49 -16.44 16 16 C 0.70 22.28 8.29 179.05 1.49 23.76 16 17 O -0.63 -25.34 15.77 -3.96 -0.06 -25.41 16 18 N -0.73 -22.92 5.47 -478.54 -2.62 -25.53 16 19 C 0.16 6.65 5.62 86.38 0.49 7.13 16 20 C -0.01 -0.50 4.16 29.85 0.12 -0.38 16 21 C -0.54 -30.32 9.66 25.60 0.25 -30.07 16 22 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 23 C 0.00 0.16 5.47 84.65 0.46 0.62 16 24 N -0.95 -58.89 13.96 21.44 0.30 -58.59 16 25 Si 0.96 41.68 27.47 68.60 1.88 43.57 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 28 H -0.24 -9.01 6.54 99.48 0.65 -8.35 16 29 C 0.14 2.82 5.57 86.37 0.48 3.30 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.79 7.75 -2.39 -0.02 0.77 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.41 5.18 8.14 -92.71 -0.75 4.43 16 41 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 42 H 0.07 1.15 8.07 -2.39 -0.02 1.13 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 1.25 5.66 -2.38 -0.01 1.24 16 47 H 0.41 10.02 5.97 -92.71 -0.55 9.47 16 48 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 51 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 52 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 53 H 0.09 1.91 6.59 -2.39 -0.02 1.89 16 54 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -75.43 423.73 1.10 -74.33 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.49 Total: 25.74 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 6.59 Total: 9.63 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -6.77 Total: -113.21 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.11 Total: -40.05 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.57 kcal Total: -75.43 1.10 -74.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344019342.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.856 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds