Wall clock time and date at job start Tue Mar 31 2020 23:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.53005 * 109.46978 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99538 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00388 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99576 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.50320 * 60.06526 * 8 6 5 10 10 C 1.53044 * 109.49440 * 180.16152 * 8 6 5 11 11 C 1.53043 * 109.53761 * 58.58092 * 10 8 6 12 12 C 1.52759 * 109.38331 * 61.24436 * 11 10 8 13 13 H 1.09003 * 109.43532 * 65.41644 * 12 11 10 14 14 C 1.52992 * 109.51243 * 185.70625 * 12 11 10 15 15 N 1.46927 * 109.00511 * 305.58579 * 12 11 10 16 16 C 1.34777 * 120.63040 * 233.58303 * 15 12 11 17 17 O 1.21589 * 119.99730 * 5.05157 * 16 15 12 18 18 N 1.34773 * 120.00360 * 185.05059 * 16 15 12 19 19 C 1.46501 * 120.00443 * 175.02802 * 18 16 15 20 20 C 1.53002 * 109.47334 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.46888 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00658 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99921 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99852 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47017 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47263 * 119.99910 * 25 23 21 28 28 H 1.48498 * 109.46975 * 240.00044 * 25 23 21 29 29 C 1.46925 * 118.74050 * 53.31172 * 15 12 11 30 30 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46936 * 299.99683 * 1 2 3 32 32 H 1.08998 * 109.47068 * 59.99715 * 1 2 3 33 33 H 1.08994 * 109.46918 * 240.00136 * 2 1 3 34 34 H 1.08998 * 109.47068 * 120.00284 * 2 1 3 35 35 H 1.09008 * 109.47028 * 60.00373 * 3 2 1 36 36 H 1.08998 * 109.47453 * 300.00049 * 3 2 1 37 37 H 1.08994 * 109.46918 * 60.00136 * 4 3 2 38 38 H 1.08998 * 109.47068 * 300.00284 * 4 3 2 39 39 H 0.96999 * 120.00255 * 0.02562 * 5 4 3 40 40 H 1.09005 * 109.45972 * 178.60042 * 10 8 6 41 41 H 1.08994 * 109.45984 * 298.56318 * 10 8 6 42 42 H 1.09008 * 109.49312 * 181.31595 * 11 10 8 43 43 H 1.08990 * 109.49739 * 301.38228 * 11 10 8 44 44 H 1.08999 * 109.47503 * 184.34780 * 14 12 11 45 45 H 1.09008 * 109.47156 * 304.34664 * 14 12 11 46 46 H 1.08999 * 109.47621 * 64.34069 * 14 12 11 47 47 H 0.97002 * 119.99719 * 355.02454 * 18 16 15 48 48 H 1.09006 * 109.46664 * 300.00038 * 19 18 16 49 49 H 1.09000 * 109.46960 * 60.00021 * 19 18 16 50 50 H 1.08996 * 109.46846 * 299.99955 * 20 19 18 51 51 H 1.09000 * 109.47064 * 60.00104 * 20 19 18 52 52 H 0.96993 * 120.00207 * 180.02562 * 24 23 21 53 53 H 1.08996 * 109.58611 * 66.43079 * 29 15 12 54 54 H 1.09006 * 109.58952 * 186.85636 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3835 3.0699 -0.0010 7 8 6.1716 2.1482 -0.0018 8 6 5.8857 4.4908 0.0003 9 1 5.5244 5.0037 0.8916 10 6 7.4162 4.4915 -0.0052 11 6 7.9239 3.7424 -1.2395 12 6 7.4353 4.4530 -2.5004 13 1 7.8928 5.4406 -2.5605 14 6 7.8195 3.6306 -3.7319 15 7 5.9739 4.5905 -2.4363 16 6 5.1976 4.1471 -3.4449 17 8 5.6962 3.5459 -4.3767 18 7 3.8686 4.3701 -3.4207 19 6 3.0402 3.9855 -4.5661 20 6 1.5802 4.3453 -4.2834 21 6 0.7283 3.9501 -5.4620 22 1 1.1826 3.4882 -6.3260 23 6 -0.6313 4.1784 -5.4372 24 7 -1.1845 4.7414 -4.3852 25 14 -1.6875 3.6880 -6.8977 26 1 -0.8302 3.0788 -7.9461 27 1 -2.7105 2.7043 -6.4608 28 1 -2.3612 4.8917 -7.4477 29 6 5.3744 5.2149 -1.2491 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9338 0.9285 0.8891 39 1 3.4280 3.5610 0.0011 40 1 7.7788 5.5191 -0.0294 41 1 7.7827 3.9983 0.8950 42 1 9.0138 3.7231 -1.2305 43 1 7.5418 2.7218 -1.2283 44 1 7.5395 4.1746 -4.6340 45 1 8.8957 3.4571 -3.7316 46 1 7.2974 2.6741 -3.7075 47 1 3.4606 4.7853 -2.6447 48 1 3.3803 4.5168 -5.4551 49 1 3.1240 2.9112 -4.7306 50 1 1.2406 3.8136 -3.3946 51 1 1.4961 5.4195 -4.1186 52 1 -2.1409 4.9017 -4.3676 53 1 5.6604 6.2657 -1.2052 54 1 4.2887 5.1315 -1.3011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345811513.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:32 Heat of formation + Delta-G solvation = -96.821528 kcal Electronic energy + Delta-G solvation = -31968.706708 eV Core-core repulsion = 27939.264615 eV Total energy + Delta-G solvation = -4029.442093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.09138 -40.63552 -38.32854 -37.08388 -36.70567 -35.17102 -34.70263 -33.75801 -33.50018 -31.15227 -30.06308 -28.40377 -26.76823 -25.78455 -24.82532 -23.67337 -22.87382 -22.31534 -22.27032 -21.28790 -20.42309 -18.93238 -18.42630 -17.78712 -17.21764 -16.96314 -16.86489 -16.70609 -16.47101 -16.04481 -15.64444 -15.43838 -15.22477 -15.04688 -14.77065 -14.58612 -14.42989 -14.24821 -14.10027 -14.04480 -13.52044 -13.32922 -13.27431 -13.12668 -12.98197 -12.94927 -12.53779 -12.52319 -12.51540 -12.20197 -12.11877 -12.04031 -11.87802 -11.77262 -11.64749 -11.55881 -11.52585 -11.38176 -10.60199 -10.58223 -10.27854 -10.07975 -10.00276 -9.39542 -8.22802 -6.31553 1.40081 1.42159 1.53877 1.63326 1.70423 2.17252 2.25304 2.41281 3.00883 3.12316 3.57746 3.73965 3.80010 3.84794 3.96911 4.03820 4.11614 4.15966 4.31839 4.37479 4.40380 4.48452 4.51475 4.53033 4.58859 4.61605 4.72631 4.75038 4.84010 4.86794 4.88117 4.88872 4.90958 5.01241 5.03774 5.13201 5.20895 5.28318 5.31375 5.32599 5.37850 5.40000 5.43773 5.57501 5.61717 5.64023 5.77216 5.81760 5.97234 6.20067 6.55248 6.80165 7.04240 7.29017 7.37270 7.64901 8.88812 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.003905 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.962737 B = 7169.113225 C = 9421.524083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.124 4.124 4 C 0.128 3.872 5 N -0.723 5.723 6 C 0.511 3.489 7 O -0.573 6.573 8 C -0.118 4.118 9 H 0.151 0.849 10 C -0.091 4.091 11 C -0.143 4.143 12 C 0.160 3.840 13 H 0.094 0.906 14 C -0.123 4.123 15 N -0.625 5.625 16 C 0.696 3.304 17 O -0.624 6.624 18 N -0.732 5.732 19 C 0.163 3.837 20 C 0.031 3.969 21 C -0.545 4.545 22 H 0.052 0.948 23 C 0.015 3.985 24 N -0.920 5.920 25 Si 0.957 3.043 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.276 1.276 29 C 0.113 3.887 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.410 0.590 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.033 0.967 47 H 0.400 0.600 48 H 0.040 0.960 49 H 0.033 0.967 50 H 0.010 0.990 51 H 0.011 0.989 52 H 0.265 0.735 53 H 0.119 0.881 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 1.925 16.497 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.162 4.162 4 C 0.004 3.996 5 N -0.375 5.375 6 C 0.299 3.701 7 O -0.452 6.452 8 C -0.140 4.140 9 H 0.169 0.831 10 C -0.129 4.129 11 C -0.182 4.182 12 C 0.057 3.943 13 H 0.112 0.888 14 C -0.180 4.180 15 N -0.363 5.363 16 C 0.398 3.602 17 O -0.506 6.506 18 N -0.389 5.389 19 C 0.039 3.961 20 C -0.007 4.007 21 C -0.583 4.583 22 H 0.071 0.929 23 C -0.184 4.184 24 N -0.560 5.560 25 Si 0.782 3.218 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.201 1.201 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.246 0.754 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.238 0.762 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.029 0.971 51 H 0.029 0.971 52 H 0.074 0.926 53 H 0.137 0.863 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.938 0.899 15.870 20.495 hybrid contribution -1.403 -0.170 -0.774 1.611 sum 11.535 0.728 15.096 19.013 Atomic orbital electron populations 1.21754 0.95251 1.02102 1.01807 1.21404 0.96350 0.95658 1.02265 1.21759 0.92776 0.98537 1.03104 1.21203 0.94656 0.83104 1.00618 1.46023 1.07302 1.09161 1.75042 1.21194 0.81909 0.92509 0.74481 1.90608 1.55844 1.48070 1.50724 1.21904 0.99099 0.91580 1.01429 0.83128 1.21312 0.91567 1.02113 0.97914 1.22152 1.01450 1.00757 0.93800 1.21182 0.77582 0.99751 0.95772 0.88811 1.21960 0.98986 1.00027 0.97048 1.47378 1.06731 1.63602 1.18552 1.16212 0.81586 0.79400 0.82966 1.90938 1.72912 1.47949 1.38799 1.45423 1.05611 1.66356 1.21517 1.21009 0.90683 0.97609 0.86833 1.19064 0.89018 0.96113 0.96482 1.21437 0.93241 1.40675 1.02966 0.92930 1.25719 0.99142 0.94831 0.98728 1.70031 1.11942 1.43674 1.30329 0.85522 0.78595 0.78187 0.79518 1.19442 1.20216 1.20139 1.21931 0.98133 0.98640 0.82275 0.91903 0.91621 0.94203 0.93067 0.90414 0.89376 0.92664 0.94859 0.91414 0.75364 0.87876 0.91145 0.89643 0.92138 0.93440 0.92334 0.94759 0.76238 0.94188 0.94889 0.97139 0.97093 0.92573 0.86296 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.12 -2.48 5.93 30.60 0.18 -2.30 16 3 C -0.12 -2.65 5.33 30.60 0.16 -2.49 16 4 C 0.13 3.06 5.67 86.38 0.49 3.55 16 5 N -0.72 -15.31 5.42 -463.06 -2.51 -17.82 16 6 C 0.51 12.00 6.57 87.66 0.58 12.58 16 7 O -0.57 -18.31 13.58 -3.03 -0.04 -18.35 16 8 C -0.12 -1.73 3.03 -11.46 -0.03 -1.76 16 9 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 10 C -0.09 -1.35 5.07 30.62 0.16 -1.19 16 11 C -0.14 -3.08 5.02 30.53 0.15 -2.92 16 12 C 0.16 3.81 3.47 44.83 0.16 3.97 16 13 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.12 -3.73 7.58 71.98 0.55 -3.19 16 15 N -0.62 -16.19 2.68 -813.71 -2.18 -18.37 16 16 C 0.70 24.95 8.21 179.06 1.47 26.42 16 17 O -0.62 -27.53 11.75 -4.00 -0.05 -27.58 16 18 N -0.73 -25.70 5.46 -478.53 -2.61 -28.32 16 19 C 0.16 7.14 5.62 86.38 0.49 7.62 16 20 C 0.03 1.51 5.09 29.85 0.15 1.66 16 21 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 22 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 23 C 0.02 0.83 5.46 84.66 0.46 1.29 16 24 N -0.92 -52.01 13.29 21.45 0.28 -51.72 16 25 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.11 1.82 5.74 86.36 0.50 2.32 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.41 6.66 7.84 -92.71 -0.73 5.93 16 40 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 42 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.06 1.84 5.38 -2.39 -0.01 1.83 16 44 H 0.05 1.64 6.80 -2.39 -0.02 1.62 16 45 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.03 1.30 6.69 -2.39 -0.02 1.28 16 47 H 0.40 11.67 5.96 -92.71 -0.55 11.12 16 48 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 53 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.08 1.31 4.94 -2.38 -0.01 1.30 16 Total: -1.00 -74.99 416.34 0.92 -74.07 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.40 Total: 29.68 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.40 Total: 13.25 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -7.02 Total: -116.23 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.09 Total: -45.93 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.99 0.92 -74.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345811513.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.754 kcal (2) G-P(sol) polarization free energy of solvation -74.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds