Wall clock time and date at job start Tue Mar 31 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47608 * 2 1 4 4 C 1.53001 * 109.46882 * 119.99924 * 2 1 3 5 5 H 1.09002 * 109.63078 * 184.46643 * 4 2 1 6 6 C 1.53239 * 109.79259 * 304.95585 * 4 2 1 7 7 N 1.46894 * 109.34025 * 173.63297 * 6 4 2 8 8 C 1.46910 * 110.99558 * 172.74961 * 7 6 4 9 9 C 1.46898 * 111.27148 * 296.89377 * 7 6 4 10 10 C 1.52776 * 109.42192 * 62.96886 * 9 7 6 11 11 N 1.47079 * 108.76535 * 306.42478 * 10 9 7 12 12 C 1.34781 * 120.88057 * 231.11779 * 11 10 9 13 13 O 1.21353 * 119.99818 * 186.94672 * 12 11 10 14 14 C 1.49449 * 120.00197 * 6.95412 * 12 11 10 15 15 O 1.21356 * 119.99651 * 6.48432 * 14 12 11 16 16 N 1.34773 * 120.00071 * 186.48892 * 14 12 11 17 17 C 1.46503 * 119.99680 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46870 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46980 * 59.99734 * 18 17 16 20 20 C 1.52997 * 109.47114 * 299.99717 * 18 17 16 21 21 C 1.50703 * 109.47090 * 179.97438 * 18 17 16 22 22 H 1.07997 * 119.99654 * 3.48521 * 21 18 17 23 23 C 1.37876 * 119.99956 * 183.48347 * 21 18 17 24 24 N 1.31512 * 119.99977 * 353.57164 * 23 21 18 25 25 Si 1.86799 * 119.99752 * 173.57755 * 23 21 18 26 26 H 1.48492 * 109.47516 * 89.99832 * 25 23 21 27 27 H 1.48500 * 109.47088 * 329.99303 * 25 23 21 28 28 H 1.48507 * 109.46627 * 209.99734 * 25 23 21 29 29 H 1.09005 * 109.46908 * 305.43505 * 1 2 3 30 30 H 1.09002 * 109.46881 * 65.42746 * 1 2 3 31 31 H 1.08994 * 109.47725 * 185.42969 * 1 2 3 32 32 H 1.09000 * 109.47236 * 239.99449 * 2 1 3 33 33 H 1.09003 * 109.47608 * 184.95319 * 3 2 1 34 34 H 1.08997 * 109.47161 * 304.95369 * 3 2 1 35 35 H 1.08999 * 109.47297 * 64.95552 * 3 2 1 36 36 H 1.08993 * 109.49454 * 293.59845 * 6 4 2 37 37 H 1.09003 * 109.48682 * 53.67184 * 6 4 2 38 38 H 1.08993 * 109.47185 * 60.00354 * 8 7 6 39 39 H 1.09000 * 109.46760 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.46635 * 299.99891 * 8 7 6 41 41 H 1.09001 * 109.49267 * 183.06855 * 9 7 6 42 42 H 1.08997 * 109.49442 * 303.12096 * 9 7 6 43 43 H 1.08999 * 109.56195 * 186.60727 * 10 9 7 44 44 H 1.09000 * 109.46078 * 66.17904 * 10 9 7 45 45 H 0.97001 * 120.00023 * 359.97438 * 16 14 12 46 46 H 1.08995 * 109.47189 * 59.99809 * 17 16 14 47 47 H 1.08997 * 109.46915 * 299.99342 * 17 16 14 48 48 H 1.09005 * 109.46722 * 174.70149 * 19 18 17 49 49 H 1.08999 * 109.46925 * 294.69867 * 19 18 17 50 50 H 1.08996 * 109.47175 * 54.70349 * 19 18 17 51 51 H 1.09000 * 109.46973 * 305.18304 * 20 18 17 52 52 H 1.09000 * 109.47132 * 65.18319 * 20 18 17 53 53 H 1.09000 * 109.47214 * 185.17759 * 20 18 17 54 54 H 0.97004 * 120.00100 * 4.54436 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1269 -0.6541 1.2928 6 6 1.4339 -0.0801 2.5023 7 7 1.8068 -0.8713 3.6824 8 6 1.3914 -0.1980 4.9203 9 6 1.2519 -2.2296 3.6104 10 6 1.8448 -2.9573 2.4050 11 7 1.6337 -2.1342 1.2045 12 6 1.0778 -2.6593 0.0947 13 8 1.0258 -2.0047 -0.9258 14 6 0.5253 -4.0477 0.1208 15 8 0.4696 -4.6589 1.1677 16 7 0.0889 -4.6208 -1.0182 17 6 -0.4532 -5.9816 -0.9924 18 6 -0.8737 -6.3899 -2.4058 19 6 0.3423 -6.3428 -3.3332 20 6 -1.9439 -5.4243 -2.9185 21 6 -1.4308 -7.7900 -2.3794 22 1 -1.5323 -8.3130 -1.4400 23 6 -1.8108 -8.4029 -3.5544 24 7 -1.8068 -7.7246 -4.6811 25 14 -2.3316 -10.1969 -3.5460 26 1 -3.7959 -10.2862 -3.3162 27 1 -1.6155 -10.9151 -2.4613 28 1 -1.9972 -10.8154 -4.8541 29 1 -0.3633 0.5959 0.8374 30 1 -0.3633 0.4274 -0.9346 31 1 -0.3634 -1.0230 0.0972 32 1 1.8933 -0.5139 -0.8899 33 1 3.1264 1.4437 -0.0887 34 1 1.6061 1.9812 -0.8423 35 1 1.7510 1.9300 0.9310 36 1 1.8134 0.9359 2.6108 37 1 0.3482 -0.0551 2.4092 38 1 0.3097 -0.0650 4.9162 39 1 1.6792 -0.8054 5.7784 40 1 1.8770 0.7757 4.9846 41 1 1.4994 -2.7725 4.5226 42 1 0.1686 -2.1747 3.5024 43 1 1.3497 -3.9203 2.2803 44 1 2.9127 -3.1091 2.5617 45 1 0.1331 -4.1321 -1.8550 46 1 -1.3197 -6.0150 -0.3321 47 1 0.3091 -6.6695 -0.6268 48 1 0.0644 -6.7231 -4.3162 49 1 0.6885 -5.3134 -3.4264 50 1 1.1402 -6.9583 -2.9178 51 1 -2.7710 -5.3888 -2.2094 52 1 -1.5137 -4.4284 -3.0250 53 1 -2.3094 -5.7675 -3.8863 54 1 -1.4743 -6.8135 -4.6976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422473987.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:14 Heat of formation + Delta-G solvation = -35.823202 kcal Electronic energy + Delta-G solvation = -32072.822718 eV Core-core repulsion = 28046.025711 eV Total energy + Delta-G solvation = -4026.797007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.51283 -40.61815 -39.13507 -38.72352 -36.49620 -35.90203 -34.99657 -32.49509 -31.01212 -29.64369 -28.28919 -28.04748 -27.90615 -27.12720 -25.87209 -25.21126 -24.06120 -22.13979 -21.75710 -20.85963 -20.43103 -19.15721 -18.31234 -17.75633 -17.35171 -16.89304 -16.81168 -16.33375 -16.23023 -15.97827 -15.68635 -15.61411 -15.43632 -15.19393 -14.70065 -14.65384 -14.50145 -14.24266 -14.11843 -13.70459 -13.38029 -13.28050 -13.25741 -13.08141 -13.06122 -12.80476 -12.79967 -12.67082 -12.55369 -12.43423 -12.19312 -12.09486 -11.90892 -11.80017 -11.75297 -11.68939 -11.44104 -11.05876 -10.54346 -10.31336 -10.23466 -9.92525 -9.81903 -9.32587 -8.38123 -6.24862 0.27606 1.23990 1.57932 1.64464 1.81907 2.06811 2.37783 2.61977 2.88722 3.20871 3.25827 3.74148 3.78382 3.89411 4.08786 4.10326 4.12512 4.20398 4.26864 4.29147 4.39023 4.43482 4.54522 4.60690 4.63339 4.70545 4.71687 4.76114 4.78670 4.79008 4.83157 4.85443 4.93803 4.95263 4.97555 5.01005 5.04346 5.13973 5.17693 5.18149 5.29273 5.37925 5.42255 5.59655 5.65468 5.76936 5.86840 5.96474 6.05371 6.14608 6.20064 6.32062 6.68511 6.75864 6.91604 7.52291 8.89284 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002681 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.438521 B =10440.461257 C =11343.404654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.152 3.848 5 H 0.090 0.910 6 C 0.047 3.953 7 N -0.551 5.551 8 C 0.025 3.975 9 C 0.050 3.950 10 C 0.053 3.947 11 N -0.574 5.574 12 C 0.510 3.490 13 O -0.519 6.519 14 C 0.496 3.504 15 O -0.534 6.534 16 N -0.679 5.679 17 C 0.152 3.848 18 C 0.036 3.964 19 C -0.139 4.139 20 C -0.138 4.138 21 C -0.602 4.602 22 H 0.045 0.955 23 C -0.016 4.016 24 N -0.940 5.940 25 Si 1.107 2.893 26 H -0.280 1.280 27 H -0.275 1.275 28 H -0.287 1.287 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.029 0.971 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.034 0.966 38 H 0.022 0.978 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.413 0.587 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.043 0.957 50 H 0.036 0.964 51 H 0.033 0.967 52 H 0.041 0.959 53 H 0.049 0.951 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.734 18.214 15.962 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 C -0.201 4.201 4 C 0.050 3.950 5 H 0.108 0.892 6 C -0.081 4.081 7 N -0.275 5.275 8 C -0.122 4.122 9 C -0.079 4.079 10 C -0.068 4.068 11 N -0.307 5.307 12 C 0.293 3.707 13 O -0.396 6.396 14 C 0.278 3.722 15 O -0.415 6.415 16 N -0.330 5.330 17 C 0.029 3.971 18 C 0.035 3.965 19 C -0.197 4.197 20 C -0.196 4.196 21 C -0.640 4.640 22 H 0.063 0.937 23 C -0.216 4.216 24 N -0.581 5.581 25 Si 0.931 3.069 26 H -0.206 1.206 27 H -0.200 1.200 28 H -0.212 1.212 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.042 0.958 43 H 0.162 0.838 44 H 0.098 0.902 45 H 0.251 0.749 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.060 0.940 53 H 0.068 0.932 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.597 16.885 15.207 24.295 hybrid contribution -0.528 1.243 0.436 1.420 sum 8.069 18.129 15.643 25.268 Atomic orbital electron populations 1.21894 0.95775 1.00047 1.00993 1.21787 0.96034 0.96828 0.97963 1.21882 1.01368 0.94375 1.02433 1.21697 0.99680 0.77999 0.95634 0.89229 1.22627 0.98305 0.98209 0.88972 1.62022 1.59873 1.02584 1.03022 1.22425 0.98336 1.00240 0.91228 1.22331 0.96300 0.90057 0.99163 1.23254 1.03157 0.98075 0.82282 1.48084 1.57814 1.11919 1.12874 1.19830 0.79655 0.86727 0.84485 1.90720 1.56672 1.60049 1.32202 1.20641 0.79481 0.87768 0.84333 1.90290 1.56593 1.64894 1.29715 1.46066 1.59600 1.16977 1.10370 1.21404 0.97036 0.79956 0.98690 1.18537 0.92640 0.94926 0.90396 1.21927 0.97727 0.98855 1.01167 1.21962 0.99120 0.97203 1.01291 1.22064 1.46591 0.99904 0.95435 0.93690 1.26782 0.94546 1.08189 0.92052 1.70911 1.44039 1.13887 1.29300 0.83045 0.76731 0.71304 0.75853 1.20582 1.20041 1.21243 0.92811 0.93102 0.95229 0.88187 0.91839 0.92268 0.91674 0.87399 0.94761 0.95911 0.90239 0.89939 0.87785 0.95836 0.83822 0.90207 0.74944 0.92778 0.92375 0.93175 0.93823 0.94476 0.94825 0.93969 0.93223 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 7.48 71.98 0.54 -2.45 16 2 C -0.11 -2.22 2.17 -10.80 -0.02 -2.25 16 3 C -0.14 -2.10 9.06 71.98 0.65 -1.45 16 4 C 0.15 3.04 2.81 44.96 0.13 3.16 16 5 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 6 C 0.05 0.79 4.22 86.38 0.36 1.16 16 7 N -0.55 -9.19 4.88 -922.44 -4.51 -13.69 16 8 C 0.03 0.31 9.58 127.69 1.22 1.53 16 9 C 0.05 0.95 5.60 86.23 0.48 1.43 16 10 C 0.05 1.20 6.43 86.19 0.55 1.75 16 11 N -0.57 -14.05 2.95 -796.52 -2.35 -16.39 16 12 C 0.51 14.96 6.10 87.27 0.53 15.49 16 13 O -0.52 -15.98 10.83 -3.26 -0.04 -16.02 16 14 C 0.50 16.42 7.78 87.27 0.68 17.10 16 15 O -0.53 -18.77 13.12 -3.26 -0.04 -18.81 16 16 N -0.68 -23.70 5.01 -464.41 -2.33 -26.03 16 17 C 0.15 6.15 4.50 86.38 0.39 6.54 16 18 C 0.04 1.63 0.50 -52.93 -0.03 1.60 16 19 C -0.14 -6.11 7.89 71.98 0.57 -5.54 16 20 C -0.14 -6.11 7.94 71.98 0.57 -5.54 16 21 C -0.60 -31.59 8.01 25.60 0.20 -31.39 16 22 H 0.04 2.38 7.75 -2.91 -0.02 2.36 16 23 C -0.02 -0.86 5.10 84.65 0.43 -0.42 16 24 N -0.94 -53.25 12.21 21.45 0.26 -52.99 16 25 Si 1.11 48.70 29.91 68.60 2.05 50.75 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 29 H 0.05 1.06 6.56 -2.38 -0.02 1.05 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.82 5.23 -2.39 -0.01 0.81 16 32 H 0.10 2.60 5.57 -24.43 -0.14 2.47 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.77 6.51 -2.39 -0.02 0.76 16 36 H 0.11 1.37 6.78 -2.39 -0.02 1.36 16 37 H 0.03 0.66 6.15 -2.39 -0.01 0.65 16 38 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.62 8.06 -2.39 -0.02 1.60 16 42 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.15 3.90 3.81 -76.04 -0.29 3.61 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.41 13.97 5.73 -92.71 -0.53 13.44 16 46 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.05 2.46 5.21 -2.38 -0.01 2.44 16 49 H 0.04 1.66 7.02 -2.39 -0.02 1.64 16 50 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.04 1.62 7.01 -2.39 -0.02 1.60 16 53 H 0.05 2.45 5.25 -2.39 -0.01 2.44 16 54 H 0.28 15.40 3.49 -92.71 -0.32 15.08 16 Total: -1.00 -59.45 391.33 0.73 -58.72 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.41 Total: 33.74 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 7.27 Total: 0.73 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -8.92 Total: -109.11 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.08 Total: -34.83 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.05 Total: 50.75 kcal Total: -59.45 0.73 -58.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422473987.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.896 kcal (2) G-P(sol) polarization free energy of solvation -59.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds