Wall clock time and date at job start Tue Mar 31 2020 23:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47061 * 2 1 4 4 C 1.52998 * 109.47242 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47441 * 180.02562 * 4 3 2 6 6 C 1.34772 * 119.99766 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99695 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.49719 * 59.99797 * 8 6 5 10 10 C 1.53039 * 109.49811 * 299.93329 * 8 6 5 11 11 C 1.53106 * 109.50508 * 178.68752 * 10 8 6 12 12 C 1.53185 * 109.33343 * 61.34143 * 11 10 8 13 13 N 1.46927 * 108.77460 * 305.36941 * 12 11 10 14 14 C 1.34783 * 120.63120 * 233.58596 * 13 12 11 15 15 O 1.21275 * 120.00357 * 180.02562 * 14 13 12 16 16 C 1.50707 * 119.99799 * 0.02562 * 14 13 12 17 17 H 1.09007 * 109.46964 * 40.00156 * 16 14 13 18 18 N 1.46896 * 109.47010 * 159.99789 * 16 14 13 19 19 C 1.52995 * 109.46938 * 280.00188 * 16 14 13 20 20 C 1.53002 * 109.46725 * 174.99862 * 19 16 14 21 21 C 1.50708 * 109.46784 * 179.97438 * 20 19 16 22 22 H 1.07990 * 120.00204 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99881 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99860 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99866 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46600 * 90.00136 * 25 23 21 27 27 H 1.48499 * 109.46856 * 210.00088 * 25 23 21 28 28 H 1.48497 * 109.47236 * 330.00159 * 25 23 21 29 29 C 1.46919 * 118.74315 * 53.60638 * 13 12 11 30 30 H 1.09008 * 109.46802 * 59.99942 * 1 2 3 31 31 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47212 * 299.99794 * 1 2 3 33 33 H 1.09002 * 109.47212 * 240.00205 * 2 1 3 34 34 H 1.08996 * 109.46735 * 120.00518 * 2 1 3 35 35 H 1.09002 * 109.47465 * 60.00033 * 3 2 1 36 36 H 1.09004 * 109.47615 * 300.00168 * 3 2 1 37 37 H 1.09002 * 109.46858 * 60.00312 * 4 3 2 38 38 H 1.08999 * 109.47568 * 300.00420 * 4 3 2 39 39 H 0.96994 * 119.99771 * 0.02562 * 5 4 3 40 40 H 1.09006 * 109.46255 * 298.67213 * 10 8 6 41 41 H 1.08997 * 109.45914 * 58.62818 * 10 8 6 42 42 H 1.09008 * 109.48567 * 301.38299 * 11 10 8 43 43 H 1.08998 * 109.51592 * 181.32062 * 11 10 8 44 44 H 1.08996 * 109.59131 * 185.58096 * 12 11 10 45 45 H 1.09001 * 109.70543 * 65.21903 * 12 11 10 46 46 H 1.00903 * 111.00290 * 296.04684 * 18 16 14 47 47 H 1.00905 * 110.99768 * 60.00254 * 18 16 14 48 48 H 1.08997 * 109.47339 * 294.99899 * 19 16 14 49 49 H 1.09000 * 109.47538 * 55.00313 * 19 16 14 50 50 H 1.08997 * 109.47657 * 299.99443 * 20 19 16 51 51 H 1.09002 * 109.47236 * 60.00113 * 20 19 16 52 52 H 0.97006 * 119.99701 * 179.97438 * 24 23 21 53 53 H 1.09001 * 109.59116 * 186.60805 * 29 13 12 54 54 H 1.08996 * 109.58757 * 66.17680 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 5.3834 3.0699 0.0014 7 8 6.1716 2.1481 0.0014 8 6 5.8858 4.4908 0.0026 9 1 5.5227 5.0042 0.8929 10 6 5.3772 5.2134 -1.2469 11 6 5.8603 6.6662 -1.2294 12 6 7.3919 6.6915 -1.2451 13 7 7.8898 5.8767 -0.1285 14 6 8.7634 6.3902 0.7602 15 8 9.1674 5.7073 1.6774 16 6 9.2382 7.8130 0.6142 17 1 8.4037 8.4452 0.3107 18 7 9.7691 8.2865 1.8994 19 6 10.3386 7.8770 -0.4469 20 6 10.7334 9.3359 -0.6848 21 6 11.8178 9.3989 -1.7295 22 1 12.1880 8.4895 -2.1790 23 6 12.3373 10.6177 -2.1113 24 7 13.2832 10.6727 -3.0233 25 14 11.6965 12.1909 -1.3341 26 1 12.4983 12.5079 -0.1250 27 1 11.8086 13.3057 -2.3087 28 1 10.2733 12.0097 -0.9508 29 6 7.4177 4.4915 0.0009 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9337 0.9286 -0.8892 38 1 3.9330 0.9288 0.8908 39 1 3.4280 3.5609 0.0016 40 1 5.7609 4.7141 -2.1367 41 1 4.2876 5.1923 -1.2604 42 1 5.4975 7.1592 -0.3275 43 1 5.4788 7.1874 -2.1074 44 1 7.7416 7.7178 -1.1330 45 1 7.7566 6.2821 -2.1872 46 1 9.0448 8.3149 2.6014 47 1 10.5444 7.7162 2.2026 48 1 11.2080 7.3167 -0.1029 49 1 9.9719 7.4436 -1.3773 50 1 9.8641 9.8962 -1.0288 51 1 11.1002 9.7694 0.2457 52 1 13.6484 11.5302 -3.2922 53 1 7.7843 4.0661 0.9351 54 1 7.7824 3.9012 -0.8397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424115507.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:17 Heat of formation + Delta-G solvation = -131.025385 kcal Electronic energy + Delta-G solvation = -29938.328488 eV Core-core repulsion = 25907.403204 eV Total energy + Delta-G solvation = -4030.925284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.80118 -40.79193 -38.40884 -37.17250 -36.93113 -34.89442 -34.79003 -33.91809 -32.36264 -32.26419 -29.93555 -28.58726 -26.75126 -25.81791 -24.60622 -23.72093 -22.60774 -22.28162 -21.79477 -20.89551 -20.08195 -18.95244 -18.55016 -17.94303 -17.37130 -16.98683 -16.95525 -16.76694 -16.21239 -16.07001 -15.92179 -15.43988 -15.34461 -15.00729 -14.85525 -14.69302 -14.56504 -14.44893 -14.14143 -13.95835 -13.85190 -13.71684 -13.48842 -13.28447 -12.82894 -12.66579 -12.51986 -12.47329 -12.17342 -12.10701 -12.00300 -11.97987 -11.86455 -11.75223 -11.64663 -11.59775 -11.52120 -11.25309 -11.11550 -10.85780 -10.69468 -10.17001 -9.76301 -9.68543 -8.23000 -6.26677 1.43068 1.44378 1.45220 1.51405 1.57622 1.75698 2.26201 2.43397 3.13782 3.36249 3.49552 3.65081 3.70972 3.77985 3.85401 3.98132 4.00255 4.02609 4.10793 4.18609 4.20556 4.24198 4.42038 4.47790 4.57131 4.62672 4.67947 4.70243 4.72114 4.77614 4.86094 4.90626 4.91025 4.93229 5.02986 5.05700 5.06429 5.14077 5.25080 5.33628 5.34626 5.39182 5.43682 5.46004 5.51065 5.66063 5.74244 6.03148 6.28382 6.34312 6.46512 6.48863 6.81888 7.01340 7.16791 7.37887 8.93994 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.001886 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.052953 B =14838.813910 C =15176.885300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.520 3.480 7 O -0.586 6.586 8 C -0.109 4.109 9 H 0.115 0.885 10 C -0.105 4.105 11 C -0.124 4.124 12 C 0.086 3.914 13 N -0.602 5.602 14 C 0.484 3.516 15 O -0.587 6.587 16 C 0.087 3.913 17 H 0.126 0.874 18 N -0.817 5.817 19 C -0.080 4.080 20 C 0.005 3.995 21 C -0.533 4.533 22 H 0.025 0.975 23 C 0.003 3.997 24 N -0.956 5.956 25 Si 0.954 3.046 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.236 1.236 29 C 0.130 3.870 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.418 0.582 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.349 0.651 47 H 0.344 0.656 48 H 0.034 0.966 49 H 0.065 0.935 50 H 0.029 0.971 51 H 0.027 0.973 52 H 0.264 0.736 53 H 0.064 0.936 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.047 -13.920 5.778 36.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.008 4.008 5 N -0.365 5.365 6 C 0.306 3.694 7 O -0.466 6.466 8 C -0.131 4.131 9 H 0.133 0.867 10 C -0.143 4.143 11 C -0.162 4.162 12 C -0.036 4.036 13 N -0.335 5.335 14 C 0.272 3.728 15 O -0.467 6.467 16 C -0.029 4.029 17 H 0.144 0.856 18 N -0.346 5.346 19 C -0.119 4.119 20 C -0.032 4.032 21 C -0.571 4.571 22 H 0.043 0.957 23 C -0.193 4.193 24 N -0.597 5.597 25 Si 0.778 3.222 26 H -0.200 1.200 27 H -0.213 1.213 28 H -0.159 1.159 29 C 0.007 3.993 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.255 0.745 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.162 0.838 47 H 0.158 0.842 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.048 0.952 51 H 0.045 0.955 52 H 0.073 0.927 53 H 0.083 0.917 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -32.030 -14.138 5.776 35.485 hybrid contribution 0.375 -0.514 0.380 0.741 sum -31.655 -14.653 6.156 35.421 Atomic orbital electron populations 1.21755 0.94809 1.02054 1.02252 1.21450 0.96657 0.95857 1.02303 1.21760 0.91711 0.98401 1.03906 1.21427 0.95551 0.82451 1.01341 1.45872 1.06324 1.09819 1.74506 1.20751 0.82768 0.91049 0.74819 1.90728 1.56729 1.47850 1.51315 1.21595 0.95304 0.92779 1.03403 0.86678 1.21582 1.02584 0.95310 0.94774 1.21932 0.92753 0.96473 1.05074 1.22234 0.96380 0.96392 0.88559 1.48263 1.43979 1.13201 1.28011 1.22581 0.77823 0.91516 0.80915 1.90639 1.58391 1.62758 1.34943 1.21708 0.98990 0.89144 0.93028 0.85624 1.59065 1.13373 1.57529 1.04607 1.21284 0.95704 0.98821 0.96068 1.19354 0.95182 0.93385 0.95300 1.21559 1.20423 0.92999 1.22084 0.95660 1.26021 0.94759 1.03303 0.95203 1.70092 1.29453 1.26686 1.33453 0.85598 0.80963 0.77744 0.77915 1.19994 1.21301 1.15933 1.21172 0.93342 0.82414 1.02409 0.92224 0.92559 0.92349 0.91913 0.92092 0.90255 0.89921 0.92569 0.92959 0.74457 0.91497 0.87700 0.90041 0.87317 0.88390 0.90712 0.83750 0.84227 0.94678 0.91619 0.95240 0.95480 0.92683 0.91705 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.10 16 2 C -0.12 -0.83 5.93 30.59 0.18 -0.65 16 3 C -0.12 -0.68 5.33 30.59 0.16 -0.52 16 4 C 0.12 1.37 5.67 86.38 0.49 1.86 16 5 N -0.71 -8.13 5.44 -463.05 -2.52 -10.65 16 6 C 0.52 10.05 7.16 87.66 0.63 10.68 16 7 O -0.59 -17.50 15.92 -3.05 -0.05 -17.55 16 8 C -0.11 -1.76 2.67 -11.46 -0.03 -1.79 16 9 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 10 C -0.10 -1.04 5.08 30.64 0.16 -0.88 16 11 C -0.12 -1.27 6.08 30.69 0.19 -1.08 16 12 C 0.09 1.58 5.59 86.36 0.48 2.06 16 13 N -0.60 -14.99 2.97 -818.92 -2.43 -17.43 16 14 C 0.48 15.02 6.94 87.66 0.61 15.63 16 15 O -0.59 -22.33 15.66 -3.01 -0.05 -22.38 16 16 C 0.09 2.61 2.30 44.17 0.10 2.72 16 17 H 0.13 3.13 6.54 -2.38 -0.02 3.11 16 18 N -0.82 -24.62 8.44 -171.80 -1.45 -26.07 16 19 C -0.08 -3.09 4.55 30.59 0.14 -2.95 16 20 C 0.01 0.24 3.93 29.85 0.12 0.36 16 21 C -0.53 -30.77 9.66 25.60 0.25 -30.52 16 22 H 0.03 1.62 7.99 -2.92 -0.02 1.60 16 23 C 0.00 0.19 5.47 84.66 0.46 0.65 16 24 N -0.96 -60.55 13.96 21.45 0.30 -60.25 16 25 Si 0.95 44.21 27.47 68.60 1.88 46.10 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 29 C 0.13 3.30 5.06 86.37 0.44 3.74 16 30 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 1.80 7.88 -92.71 -0.73 1.07 16 40 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.10 0.37 7.53 -2.39 -0.02 0.36 16 42 H 0.08 0.72 8.14 -2.38 -0.02 0.71 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.10 1.84 5.18 -2.39 -0.01 1.83 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.35 8.76 9.06 -89.69 -0.81 7.94 16 47 H 0.34 11.20 8.58 -89.69 -0.77 10.43 16 48 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.07 2.43 7.20 -2.39 -0.02 2.41 16 50 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 51 H 0.03 1.25 7.18 -2.39 -0.02 1.23 16 52 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 53 H 0.06 2.07 7.01 -2.39 -0.02 2.05 16 54 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 Total: -1.00 -81.35 421.70 -0.70 -82.05 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -1.47 Total: 26.99 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.08 Total: -0.80 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -6.10 Total: -114.40 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.10 Total: -39.93 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -81.35 -0.70 -82.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115507.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.978 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds