Wall clock time and date at job start Tue Mar 31 2020 23:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99811 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00497 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00162 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.49695 * 300.06876 * 8 6 5 10 10 C 1.53041 * 109.49284 * 60.16213 * 8 6 5 11 11 C 1.53039 * 109.53641 * 181.31982 * 10 8 6 12 12 C 1.53199 * 109.31412 * 298.63379 * 11 10 8 13 13 N 1.46926 * 108.77023 * 54.63462 * 12 11 10 14 14 C 1.34771 * 120.62991 * 126.37404 * 13 12 11 15 15 O 1.21281 * 120.00460 * 180.02562 * 14 13 12 16 16 C 1.50706 * 120.00132 * 0.02562 * 14 13 12 17 17 H 1.08999 * 109.46757 * 320.00294 * 16 14 13 18 18 N 1.46897 * 109.47139 * 200.00046 * 16 14 13 19 19 C 1.52997 * 109.46715 * 80.00141 * 16 14 13 20 20 C 1.53005 * 109.47158 * 185.00292 * 19 16 14 21 21 C 1.50692 * 109.47341 * 180.02562 * 20 19 16 22 22 H 1.08004 * 120.00356 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99946 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00173 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00248 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47032 * 89.99773 * 25 23 21 27 27 H 1.48496 * 109.47390 * 210.00223 * 25 23 21 28 28 H 1.48503 * 109.46934 * 330.00221 * 25 23 21 29 29 C 1.46927 * 118.74077 * 306.39094 * 13 12 11 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 34 34 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 37 37 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 38 38 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 39 39 H 0.96993 * 120.00140 * 0.02562 * 5 4 3 40 40 H 1.08997 * 109.46437 * 301.33761 * 10 8 6 41 41 H 1.08996 * 109.46081 * 61.30294 * 10 8 6 42 42 H 1.09000 * 109.49972 * 178.68642 * 11 10 8 43 43 H 1.08998 * 109.52655 * 58.59755 * 11 10 8 44 44 H 1.08996 * 109.58405 * 294.84894 * 12 11 10 45 45 H 1.08998 * 109.58712 * 174.42168 * 12 11 10 46 46 H 1.00899 * 111.00508 * 300.00000 * 18 16 14 47 47 H 1.00895 * 111.00238 * 63.95547 * 18 16 14 48 48 H 1.09002 * 109.47507 * 304.99998 * 19 16 14 49 49 H 1.08997 * 109.47554 * 65.00575 * 19 16 14 50 50 H 1.09002 * 109.46671 * 300.00217 * 20 19 16 51 51 H 1.09003 * 109.47247 * 59.99381 * 20 19 16 52 52 H 0.97000 * 120.00281 * 179.97438 * 24 23 21 53 53 H 1.09001 * 109.58802 * 293.82164 * 29 13 12 54 54 H 1.09000 * 109.58686 * 173.39623 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3835 3.0699 -0.0001 7 8 6.1716 2.1481 0.0008 8 6 5.8859 4.4907 -0.0001 9 1 5.5218 5.0053 -0.8893 10 6 5.3796 5.2115 1.2513 11 6 5.8619 6.6638 1.2359 12 6 7.3936 6.6892 1.2498 13 7 7.8901 5.8765 0.1310 14 6 8.7619 6.3918 -0.7583 15 8 9.1640 5.7109 -1.6778 16 6 9.2371 7.8143 -0.6100 17 1 8.4033 8.4458 -0.3035 18 7 9.7655 8.2904 -1.8953 19 6 10.3397 7.8757 0.4489 20 6 10.7353 9.3341 0.6893 21 6 11.8217 9.3946 1.7318 22 1 12.1928 8.4841 2.1787 23 6 12.3413 10.6126 2.1160 24 7 13.2892 10.6655 3.0262 25 14 11.6992 12.1876 1.3438 26 1 10.5587 12.7020 2.1438 27 1 12.7824 13.2029 1.3163 28 1 11.2457 11.9099 -0.0428 29 6 7.4178 4.4914 -0.0002 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.9330 0.9287 0.8909 38 1 3.9338 0.9285 -0.8891 39 1 3.4281 3.5609 -0.0003 40 1 4.2899 5.1910 1.2664 41 1 5.7643 4.7106 2.1396 42 1 5.4815 7.1829 2.1156 43 1 5.4981 7.1590 0.3356 44 1 7.7573 6.2766 2.1908 45 1 7.7431 7.7157 1.1391 46 1 10.5401 7.7208 -2.2013 47 1 9.0399 8.3205 -2.5958 48 1 9.9749 7.4402 1.3791 49 1 11.2084 7.3162 0.1019 50 1 11.1001 9.7696 -0.2409 51 1 9.8666 9.8937 1.0362 52 1 13.6550 11.5223 3.2963 53 1 7.7836 3.8995 0.8388 54 1 7.7833 4.0678 -0.9357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424115508.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:20 Heat of formation + Delta-G solvation = -130.975769 kcal Electronic energy + Delta-G solvation = -29938.448239 eV Core-core repulsion = 25907.525107 eV Total energy + Delta-G solvation = -4030.923132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.80242 -40.79195 -38.41081 -37.17280 -36.93051 -34.89387 -34.78916 -33.91977 -32.36458 -32.26461 -29.93597 -28.58828 -26.75121 -25.81860 -24.60607 -23.72107 -22.60683 -22.28172 -21.79373 -20.89588 -20.08117 -18.94999 -18.55339 -17.94412 -17.36949 -16.98593 -16.95486 -16.76724 -16.20876 -16.07774 -15.92089 -15.43913 -15.34695 -15.00214 -14.84981 -14.68145 -14.56755 -14.45471 -14.16605 -13.95558 -13.88272 -13.70784 -13.43902 -13.28473 -12.81311 -12.66316 -12.53586 -12.47891 -12.17146 -12.10965 -12.01705 -11.97912 -11.89926 -11.72170 -11.64802 -11.58317 -11.52160 -11.25911 -11.11099 -10.85873 -10.68763 -10.17002 -9.76269 -9.68335 -8.22858 -6.26599 1.41642 1.43886 1.46304 1.51392 1.59942 1.75670 2.26188 2.43912 3.13789 3.36262 3.49596 3.65072 3.70999 3.77970 3.85395 3.98072 4.00247 4.02514 4.10829 4.18642 4.20540 4.24264 4.42025 4.47764 4.57261 4.62645 4.67953 4.70439 4.72101 4.77600 4.85872 4.90516 4.91004 4.93205 5.02968 5.05624 5.06402 5.13810 5.25073 5.33638 5.34608 5.39183 5.43670 5.45991 5.50463 5.66251 5.75547 6.03243 6.28431 6.34364 6.46496 6.48850 6.82024 7.01371 7.16781 7.38053 8.94132 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.001886 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.862674 B =14839.197859 C =15176.203628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.520 3.480 7 O -0.586 6.586 8 C -0.109 4.109 9 H 0.115 0.885 10 C -0.105 4.105 11 C -0.125 4.125 12 C 0.086 3.914 13 N -0.602 5.602 14 C 0.484 3.516 15 O -0.587 6.587 16 C 0.087 3.913 17 H 0.127 0.873 18 N -0.817 5.817 19 C -0.080 4.080 20 C 0.005 3.995 21 C -0.533 4.533 22 H 0.025 0.975 23 C 0.003 3.997 24 N -0.956 5.956 25 Si 0.953 3.047 26 H -0.261 1.261 27 H -0.291 1.291 28 H -0.244 1.244 29 C 0.130 3.870 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.418 0.582 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.344 0.656 47 H 0.349 0.651 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.029 0.971 51 H 0.027 0.973 52 H 0.264 0.736 53 H 0.062 0.938 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.015 -13.884 -5.797 36.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.008 4.008 5 N -0.365 5.365 6 C 0.306 3.694 7 O -0.466 6.466 8 C -0.131 4.131 9 H 0.133 0.867 10 C -0.143 4.143 11 C -0.162 4.162 12 C -0.036 4.036 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.467 6.467 16 C -0.029 4.029 17 H 0.144 0.856 18 N -0.346 5.346 19 C -0.119 4.119 20 C -0.032 4.032 21 C -0.571 4.571 22 H 0.043 0.957 23 C -0.193 4.193 24 N -0.597 5.597 25 Si 0.776 3.224 26 H -0.185 1.185 27 H -0.217 1.217 28 H -0.167 1.167 29 C 0.007 3.993 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.255 0.745 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.047 0.953 51 H 0.046 0.954 52 H 0.073 0.927 53 H 0.080 0.920 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -31.993 -14.102 -5.798 35.441 hybrid contribution 0.336 -0.515 -0.343 0.704 sum -31.657 -14.618 -6.141 35.406 Atomic orbital electron populations 1.21754 0.94810 1.02053 1.02253 1.21452 0.96657 0.95857 1.02302 1.21759 0.91712 0.98402 1.03905 1.21428 0.95549 0.82450 1.01341 1.45873 1.06323 1.09818 1.74509 1.20752 0.82769 0.91049 0.74818 1.90727 1.56727 1.47853 1.51312 1.21592 0.95306 0.92787 1.03390 0.86675 1.21568 1.02602 0.95334 0.94746 1.21926 0.92775 0.96470 1.05080 1.22241 0.96401 0.96438 0.88497 1.48261 1.44073 1.13231 1.27877 1.22580 0.77815 0.91496 0.80947 1.90641 1.58419 1.62864 1.34822 1.21710 0.98996 0.89141 0.93021 0.85581 1.59061 1.13389 1.57487 1.04652 1.21285 0.95684 0.98827 0.96078 1.19353 0.95026 0.93366 0.95491 1.21556 1.20398 0.92987 1.22127 0.95676 1.26021 0.94803 1.03328 0.95129 1.70092 1.29457 1.26741 1.33417 0.85619 0.78206 0.77868 0.80733 1.18531 1.21730 1.16714 1.21174 0.93343 0.82420 1.02408 0.92348 0.92558 0.92225 0.91913 0.92091 0.90248 0.89931 0.92566 0.92961 0.74459 0.87710 0.91502 0.87321 0.90029 0.90715 0.88349 0.84238 0.83762 0.91624 0.94683 0.95283 0.95424 0.92688 0.91969 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.10 16 2 C -0.12 -0.83 5.93 30.60 0.18 -0.65 16 3 C -0.12 -0.68 5.33 30.59 0.16 -0.52 16 4 C 0.12 1.37 5.67 86.38 0.49 1.86 16 5 N -0.71 -8.13 5.44 -463.04 -2.52 -10.65 16 6 C 0.52 10.06 7.16 87.66 0.63 10.68 16 7 O -0.59 -17.50 15.92 -3.04 -0.05 -17.55 16 8 C -0.11 -1.76 2.68 -11.46 -0.03 -1.79 16 9 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 10 C -0.10 -1.04 5.08 30.62 0.16 -0.88 16 11 C -0.12 -1.27 6.08 30.67 0.19 -1.08 16 12 C 0.09 1.57 5.59 86.36 0.48 2.05 16 13 N -0.60 -14.99 2.97 -818.90 -2.43 -17.42 16 14 C 0.48 15.03 6.94 87.66 0.61 15.63 16 15 O -0.59 -22.36 15.66 -3.03 -0.05 -22.41 16 16 C 0.09 2.62 2.30 44.17 0.10 2.72 16 17 H 0.13 3.13 6.54 -2.39 -0.02 3.11 16 18 N -0.82 -24.76 8.44 -171.80 -1.45 -26.21 16 19 C -0.08 -3.10 4.55 30.59 0.14 -2.96 16 20 C 0.01 0.23 3.93 29.85 0.12 0.35 16 21 C -0.53 -30.79 9.66 25.60 0.25 -30.54 16 22 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 23 C 0.00 0.19 5.47 84.65 0.46 0.66 16 24 N -0.96 -60.57 13.96 21.45 0.30 -60.27 16 25 Si 0.95 44.09 27.47 68.60 1.88 45.97 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 28 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 29 C 0.13 3.30 5.07 86.36 0.44 3.74 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 1.80 7.88 -92.71 -0.73 1.07 16 40 H 0.10 0.37 7.54 -2.39 -0.02 0.36 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.84 5.19 -2.39 -0.01 1.83 16 46 H 0.34 11.25 8.58 -89.69 -0.77 10.48 16 47 H 0.35 8.80 9.06 -89.70 -0.81 7.99 16 48 H 0.07 2.43 7.20 -2.39 -0.02 2.41 16 49 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 51 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 52 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 53 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 54 H 0.06 2.07 7.00 -2.39 -0.02 2.05 16 Total: -1.00 -81.47 421.71 -0.70 -82.17 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -1.47 Total: 27.19 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.08 Total: -0.83 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -6.10 Total: -114.55 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.10 Total: -39.95 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Total: -81.47 -0.70 -82.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115508.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.809 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds