Wall clock time and date at job start Tue Mar 31 2020 23:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00053 * 2 1 4 4 C 1.52994 * 109.47159 * 270.00097 * 3 2 1 5 5 C 1.53003 * 109.47208 * 299.99709 * 4 3 2 6 6 C 1.52999 * 109.47253 * 59.99926 * 4 3 2 7 7 C 1.53002 * 109.47490 * 180.02562 * 4 3 2 8 8 N 1.46896 * 109.47769 * 180.02562 * 7 4 3 9 9 C 1.34778 * 120.00133 * 179.97438 * 2 1 3 10 10 O 1.21354 * 120.00344 * 185.13498 * 9 2 1 11 11 C 1.49446 * 120.00046 * 5.13844 * 9 2 1 12 12 O 1.21355 * 120.00214 * 85.57756 * 11 9 2 13 13 N 1.34777 * 120.00439 * 265.57839 * 11 9 2 14 14 C 1.46925 * 120.63692 * 174.92997 * 13 11 9 15 15 C 1.53191 * 108.89068 * 126.34114 * 14 13 11 16 16 C 1.53357 * 109.14746 * 54.58605 * 15 14 13 17 17 C 1.52999 * 109.41695 * 178.67157 * 16 15 14 18 18 C 1.50691 * 109.47243 * 295.12390 * 17 16 15 19 19 H 1.08004 * 119.99977 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99258 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00298 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47036 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46576 * 120.00207 * 22 20 18 25 25 H 1.48498 * 109.47150 * 240.00299 * 22 20 18 26 26 C 1.53045 * 109.60341 * 298.70771 * 16 15 14 27 27 C 1.46927 * 120.62584 * 354.95589 * 13 11 9 28 28 H 1.08995 * 109.47305 * 264.71930 * 1 2 3 29 29 H 1.08997 * 109.47307 * 24.72518 * 1 2 3 30 30 H 1.09002 * 109.46910 * 144.72603 * 1 2 3 31 31 H 1.08999 * 109.46843 * 29.99865 * 3 2 1 32 32 H 1.09006 * 109.47199 * 149.99974 * 3 2 1 33 33 H 1.09000 * 109.46764 * 60.00359 * 5 4 3 34 34 H 1.08998 * 109.47288 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.47178 * 300.00139 * 5 4 3 36 36 H 1.08999 * 109.47325 * 59.99879 * 6 4 3 37 37 H 1.09005 * 109.47351 * 180.02562 * 6 4 3 38 38 H 1.08997 * 109.47051 * 299.99601 * 6 4 3 39 39 H 1.09002 * 109.46770 * 300.00319 * 7 4 3 40 40 H 1.08999 * 109.47058 * 59.99307 * 7 4 3 41 41 H 1.00896 * 111.00154 * 179.97438 * 8 7 4 42 42 H 1.00907 * 110.99451 * 303.95301 * 8 7 4 43 43 H 1.09000 * 109.58784 * 246.20421 * 14 13 11 44 44 H 1.08997 * 109.58458 * 6.48712 * 14 13 11 45 45 H 1.09001 * 109.49535 * 174.65657 * 15 14 13 46 46 H 1.08992 * 109.50083 * 294.76213 * 15 14 13 47 47 H 1.08994 * 109.42342 * 58.74242 * 16 15 14 48 48 H 1.09001 * 109.47060 * 55.12374 * 17 16 15 49 49 H 1.08997 * 109.47081 * 175.12008 * 17 16 15 50 50 H 0.97004 * 119.99539 * 179.97438 * 21 20 18 51 51 H 1.09000 * 109.49775 * 301.42458 * 26 16 15 52 52 H 1.09001 * 109.52176 * 181.34621 * 26 16 15 53 53 H 1.09004 * 109.58825 * 353.37476 * 27 13 11 54 54 H 1.08999 * 109.59002 * 113.65481 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2794 0.6441 -2.1637 6 6 1.1156 1.8934 -2.1637 7 6 3.2180 3.0351 -1.4425 8 7 3.4624 3.4595 -2.8274 9 6 2.1389 -1.1672 0.0005 10 8 3.3488 -1.1693 0.0946 11 6 1.3962 -2.4589 -0.1148 12 8 1.1059 -2.8963 -1.2089 13 7 1.0488 -3.1381 0.9962 14 6 0.2237 -4.3504 0.9054 15 6 0.9387 -5.4928 1.6337 16 6 1.2588 -5.0529 3.0675 17 6 1.9437 -6.2014 3.8110 18 6 0.9829 -7.3540 3.9493 19 1 -0.0165 -7.2751 3.5475 20 6 1.3796 -8.5093 4.5888 21 7 2.5964 -8.6051 5.0785 22 14 0.1883 -9.9378 4.7608 23 1 -1.1078 -9.5801 4.1305 24 1 0.7517 -11.1358 4.0879 25 1 -0.0256 -10.2333 6.2003 26 6 2.1899 -3.8386 3.0362 27 6 1.4876 -2.6799 2.3215 28 1 -0.3633 -0.0946 1.0232 29 1 -0.3634 0.9334 -0.4298 30 1 -0.3633 -0.8390 -0.5935 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 2.7344 -0.2998 -2.1638 34 1 3.4614 0.9590 -3.1912 35 1 4.2319 0.5138 -1.6499 36 1 0.5265 2.6530 -1.6499 37 1 1.2973 2.2076 -3.1915 38 1 0.5707 0.9494 -2.1638 39 1 2.6293 3.7949 -0.9285 40 1 4.1704 2.9044 -0.9288 41 1 3.9667 4.3330 -2.8543 42 1 3.9508 2.7435 -3.3442 43 1 -0.7447 -4.1691 1.3717 44 1 0.0807 -4.6174 -0.1417 45 1 0.2935 -6.3711 1.6546 46 1 1.8650 -5.7334 1.1121 47 1 0.3342 -4.7883 3.5804 48 1 2.8210 -6.5249 3.2508 49 1 2.2494 -5.8623 4.8007 50 1 2.8754 -9.4178 5.5287 51 1 3.1044 -4.0950 2.5015 52 1 2.4357 -3.5417 4.0558 53 1 2.1806 -1.8462 2.2089 54 1 0.6226 -2.3601 2.9025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572960521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:45 Heat of formation + Delta-G solvation = -103.945821 kcal Electronic energy + Delta-G solvation = -31339.452865 eV Core-core repulsion = 27309.701840 eV Total energy + Delta-G solvation = -4029.751026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.22993 -40.50711 -38.93197 -38.52686 -36.32315 -35.80461 -34.04587 -32.87821 -32.18452 -30.11858 -29.03271 -28.52301 -27.48828 -26.56305 -25.94957 -24.61757 -23.93835 -22.73359 -21.13487 -19.98437 -19.66142 -18.95181 -18.39700 -18.08872 -17.72480 -17.34420 -16.54169 -16.28775 -16.10879 -15.97999 -15.57116 -15.33222 -15.23369 -14.85720 -14.67481 -14.54330 -14.43364 -14.27129 -14.22433 -13.97049 -13.90092 -13.55702 -13.46510 -13.19231 -13.07750 -12.75603 -12.71719 -12.60891 -12.51769 -12.47355 -12.30706 -12.16008 -12.07499 -11.81767 -11.71087 -11.60276 -11.36055 -11.08117 -10.93608 -10.65584 -10.52573 -9.84329 -9.83861 -9.54933 -8.16515 -6.25703 0.95244 1.02228 1.38389 1.40716 1.41923 1.53973 2.25756 2.42701 3.04798 3.17483 3.62320 3.76749 3.79487 3.85822 3.97418 3.99731 4.02093 4.13330 4.17062 4.35128 4.35406 4.43583 4.48072 4.52456 4.58663 4.68692 4.72373 4.73914 4.77188 4.81059 4.82804 4.85799 4.88899 5.01538 5.02404 5.07732 5.15088 5.21062 5.29619 5.30676 5.35578 5.38294 5.46582 5.51402 5.55845 5.79229 5.89558 5.95204 6.04651 6.24051 6.28909 6.59406 6.63382 6.68179 6.91633 7.43030 8.95646 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.002186 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.125817 B =12803.366842 C =13058.210804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.583 5.583 3 C 0.118 3.882 4 C -0.076 4.076 5 C -0.134 4.134 6 C -0.128 4.128 7 C 0.079 3.921 8 N -0.853 5.853 9 C 0.520 3.480 10 O -0.543 6.543 11 C 0.512 3.488 12 O -0.555 6.555 13 N -0.585 5.585 14 C 0.116 3.884 15 C -0.114 4.114 16 C -0.071 4.071 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.069 0.931 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.960 3.040 23 H -0.256 1.256 24 H -0.286 1.286 25 H -0.281 1.281 26 C -0.125 4.125 27 C 0.114 3.886 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.350 0.650 42 H 0.340 0.660 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.076 0.924 48 H -0.021 1.021 49 H -0.008 1.008 50 H 0.260 0.740 51 H 0.039 0.961 52 H 0.084 0.916 53 H 0.082 0.918 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 28.028 -10.740 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.315 5.315 3 C -0.004 4.004 4 C -0.077 4.077 5 C -0.191 4.191 6 C -0.185 4.185 7 C -0.052 4.052 8 N -0.385 5.385 9 C 0.303 3.697 10 O -0.420 6.420 11 C 0.295 3.705 12 O -0.433 6.433 13 N -0.318 5.318 14 C -0.005 4.005 15 C -0.152 4.152 16 C -0.090 4.090 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.786 3.214 23 H -0.180 1.180 24 H -0.212 1.212 25 H -0.207 1.207 26 C -0.163 4.163 27 C -0.007 4.007 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.095 0.905 48 H -0.003 1.003 49 H 0.011 0.989 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.103 0.897 53 H 0.101 0.899 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.239 27.736 -11.227 30.566 hybrid contribution 1.385 -1.784 0.379 2.290 sum -4.854 25.952 -10.849 28.544 Atomic orbital electron populations 1.22297 0.76792 1.05008 1.03862 1.47797 1.08574 1.04703 1.70471 1.21835 0.98217 0.83743 0.96573 1.20971 0.96942 0.94824 0.94989 1.21803 0.99197 0.97733 1.00398 1.21783 0.94864 1.00881 1.01008 1.21670 0.98113 0.95305 0.90159 1.58743 1.57407 1.08848 1.13471 1.20053 0.87550 0.85204 0.76923 1.90799 1.14288 1.86906 1.50027 1.20537 0.78937 0.86283 0.84779 1.90764 1.55352 1.69909 1.27274 1.48319 1.50157 1.26751 1.06577 1.21827 0.93854 0.82768 1.02056 1.21846 0.99950 0.97947 0.95443 1.21104 0.98514 0.94189 0.95159 1.19025 0.94595 0.93212 0.93754 1.21710 0.99591 0.99703 1.35255 0.91330 1.25988 0.96841 1.01864 0.95605 1.70123 1.19671 1.28452 1.39604 0.85460 0.79468 0.78752 0.77747 1.18011 1.21195 1.20685 1.21923 0.98159 0.95240 1.00981 1.21950 1.00542 0.96428 0.81815 0.89656 0.87018 0.92381 0.86050 0.90632 0.95598 0.91946 0.93908 0.90910 0.92312 0.93843 0.89253 0.95588 0.83643 0.84693 0.87841 0.89861 0.90400 0.94825 0.90536 1.00300 0.98950 0.93109 0.94201 0.89730 0.89940 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 8.97 127.77 1.15 1.88 16 2 N -0.58 -10.34 2.40 -848.37 -2.03 -12.38 16 3 C 0.12 1.61 4.59 86.38 0.40 2.00 16 4 C -0.08 -1.06 0.67 -52.18 -0.03 -1.10 16 5 C -0.13 -2.77 6.90 71.98 0.50 -2.28 16 6 C -0.13 -1.64 7.08 71.98 0.51 -1.13 16 7 C 0.08 0.84 5.75 86.30 0.50 1.33 16 8 N -0.85 -8.96 8.84 -186.72 -1.65 -10.61 16 9 C 0.52 14.05 3.82 87.27 0.33 14.39 16 10 O -0.54 -18.01 15.09 -3.26 -0.05 -18.06 16 11 C 0.51 15.59 5.74 87.27 0.50 16.09 16 12 O -0.55 -20.22 16.41 -3.26 -0.05 -20.27 16 13 N -0.58 -16.21 2.97 -820.50 -2.44 -18.65 16 14 C 0.12 3.28 6.43 86.36 0.56 3.83 16 15 C -0.11 -4.08 5.21 30.78 0.16 -3.92 16 16 C -0.07 -2.67 2.10 -10.66 -0.02 -2.70 16 17 C 0.03 1.59 4.45 29.84 0.13 1.73 16 18 C -0.52 -28.57 8.39 25.60 0.21 -28.36 16 19 H 0.07 3.50 7.06 -2.91 -0.02 3.48 16 20 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 21 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 22 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C -0.12 -3.99 5.36 30.67 0.16 -3.82 16 27 C 0.11 2.77 6.32 86.36 0.55 3.31 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.75 6.29 -2.39 -0.02 0.73 16 30 H 0.06 0.93 6.92 -2.39 -0.02 0.91 16 31 H 0.12 0.79 8.07 -2.39 -0.02 0.77 16 32 H 0.08 1.29 7.36 -2.38 -0.02 1.27 16 33 H 0.02 0.69 6.22 -2.39 -0.01 0.67 16 34 H 0.06 1.15 6.57 -2.39 -0.02 1.13 16 35 H 0.04 1.00 7.85 -2.38 -0.02 0.99 16 36 H 0.07 0.64 8.07 -2.39 -0.02 0.62 16 37 H 0.06 0.89 7.60 -2.38 -0.02 0.87 16 38 H 0.04 0.65 6.07 -2.39 -0.01 0.64 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.35 2.51 9.08 -89.70 -0.81 1.70 16 42 H 0.34 3.86 7.03 -89.69 -0.63 3.23 16 43 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.08 2.48 7.00 -2.39 -0.02 2.46 16 45 H 0.08 2.93 6.93 -2.39 -0.02 2.91 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 48 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 49 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 50 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 51 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 53 H 0.08 1.93 6.24 -2.38 -0.01 1.92 16 54 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.04 409.30 1.60 -73.45 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.55 Total: 16.24 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 6.06 Total: 1.39 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -5.84 Total: -98.59 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.10 Total: -38.33 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -75.04 1.60 -73.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572960521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds