Wall clock time and date at job start Tue Mar 31 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47391 * 2 1 4 4 C 1.52997 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47524 * 55.00186 * 4 3 2 6 6 C 1.52996 * 109.47084 * 294.99348 * 4 3 2 7 7 C 1.50706 * 109.46994 * 174.99646 * 4 3 2 8 8 O 1.21289 * 119.99940 * 359.97438 * 7 4 3 9 9 N 1.34771 * 120.00148 * 179.97438 * 7 4 3 10 10 C 1.46501 * 119.99874 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.46934 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46934 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99554 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00652 * 355.02317 * 13 12 11 15 15 N 1.34777 * 119.99807 * 175.01679 * 13 12 11 16 16 C 1.46929 * 120.63330 * 184.94825 * 15 13 12 17 17 C 1.52759 * 109.00920 * 233.58358 * 16 15 13 18 18 C 1.53041 * 109.38343 * 305.58829 * 17 16 15 19 19 C 1.50705 * 109.44574 * 181.25404 * 18 17 16 20 20 H 1.08003 * 119.99832 * 239.94024 * 19 18 17 21 21 C 1.37874 * 120.00106 * 59.93863 * 19 18 17 22 22 N 1.31515 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47374 * 90.00164 * 23 21 19 25 25 H 1.48498 * 109.46985 * 209.99842 * 23 21 19 26 26 H 1.48501 * 109.47359 * 329.99771 * 23 21 19 27 27 C 1.53038 * 109.53781 * 61.24405 * 18 17 16 28 28 C 1.46928 * 120.62990 * 5.22879 * 15 13 12 29 29 H 1.08999 * 109.47055 * 300.00725 * 1 2 3 30 30 H 1.09008 * 109.46758 * 60.00715 * 1 2 3 31 31 H 1.08995 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47327 * 239.98798 * 2 1 3 33 33 H 1.09008 * 109.46758 * 119.99285 * 2 1 3 34 34 H 1.09000 * 109.47154 * 59.99347 * 3 2 1 35 35 H 1.09008 * 109.46586 * 299.99391 * 3 2 1 36 36 H 1.08996 * 109.47270 * 60.00699 * 6 4 3 37 37 H 1.09003 * 109.47028 * 180.02562 * 6 4 3 38 38 H 1.08999 * 109.47103 * 300.00214 * 6 4 3 39 39 H 0.96993 * 119.99907 * 0.02562 * 9 7 4 40 40 H 1.08999 * 109.47108 * 60.00484 * 10 9 7 41 41 H 1.09003 * 109.46996 * 299.99811 * 10 9 7 42 42 H 1.08999 * 109.47220 * 59.99746 * 11 10 9 43 43 H 1.09003 * 109.46991 * 299.99651 * 11 10 9 44 44 H 0.96999 * 120.00254 * 0.02562 * 12 11 10 45 45 H 1.08997 * 109.58219 * 353.42016 * 16 15 13 46 46 H 1.09000 * 109.58348 * 113.84624 * 16 15 13 47 47 H 1.09003 * 109.56559 * 185.54921 * 17 16 15 48 48 H 1.09000 * 109.38360 * 65.51235 * 17 16 15 49 49 H 1.08999 * 109.46253 * 301.21813 * 18 17 16 50 50 H 0.96999 * 119.99454 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.49837 * 178.68758 * 27 18 17 52 52 H 1.08994 * 109.52747 * 58.59979 * 27 18 17 53 53 H 1.08999 * 109.59113 * 246.15587 * 28 15 13 54 54 H 1.08996 * 109.58467 * 6.43953 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 6 4.0794 0.8330 1.3083 7 6 4.0725 2.8578 -0.1233 8 8 3.2844 3.7761 -0.2046 9 7 5.3976 3.1031 -0.1437 10 6 5.8860 4.4790 -0.2648 11 6 7.4160 4.4789 -0.2640 12 7 7.9044 5.8548 -0.3856 13 6 9.2295 6.1000 -0.4062 14 8 10.0188 5.1915 -0.2331 15 7 9.6798 7.3525 -0.6187 16 6 11.1187 7.6182 -0.7517 17 6 11.5167 8.7101 0.2398 18 6 10.6281 9.9378 0.0270 19 6 11.0399 11.0271 0.9836 20 1 10.3302 11.4126 1.7008 21 6 12.3224 11.5314 0.9434 22 7 13.1866 11.0616 0.0704 23 14 12.8325 12.8821 2.1287 24 1 13.3771 12.2729 3.3686 25 1 13.8742 13.7295 1.4948 26 1 11.6518 13.7176 2.4649 27 6 9.1665 9.5620 0.2809 28 6 8.7414 8.4789 -0.7157 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 3.7161 -0.1907 1.3980 37 1 5.1695 0.8334 1.3090 38 1 3.7158 1.4227 2.1498 39 1 6.0278 2.3687 -0.0790 40 1 5.5219 5.0691 0.5763 41 1 5.5235 4.9125 -1.1969 42 1 7.7798 3.8889 -1.1052 43 1 7.7789 4.0453 0.6679 44 1 7.2742 6.5892 -0.4506 45 1 11.6796 6.7088 -0.5362 46 1 11.3363 7.9527 -1.7660 47 1 12.5598 8.9841 0.0817 48 1 11.3879 8.3397 1.2568 49 1 10.7390 10.2933 -0.9975 50 1 14.0888 11.4167 0.0419 51 1 8.5368 10.4422 0.1520 52 1 9.0590 9.1834 1.2974 53 1 8.7612 8.8850 -1.7271 54 1 7.7340 8.1367 -0.4791 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590099481.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:59 Heat of formation + Delta-G solvation = -113.744233 kcal Electronic energy + Delta-G solvation = -29239.776663 eV Core-core repulsion = 25209.600747 eV Total energy + Delta-G solvation = -4030.175917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.44514 -40.97271 -38.66127 -37.26141 -36.66328 -35.45505 -34.99270 -33.05731 -32.75467 -31.80869 -29.78068 -27.88785 -27.48077 -25.38635 -24.63337 -23.97785 -23.33717 -22.13029 -21.70656 -20.77279 -20.43927 -19.18187 -18.33237 -18.01603 -17.35222 -17.06349 -16.79900 -16.57306 -16.53641 -16.02490 -15.45995 -15.27893 -15.22250 -14.92434 -14.81937 -14.74183 -14.54171 -14.27074 -14.04451 -13.86145 -13.46342 -13.42845 -13.13611 -13.00585 -12.89418 -12.83939 -12.77967 -12.71392 -12.46839 -12.15783 -12.13107 -11.93088 -11.83716 -11.71101 -11.43746 -11.39152 -11.36892 -10.94847 -10.79700 -10.77025 -10.40255 -10.29372 -10.14845 -9.40309 -8.06962 -6.20689 1.41323 1.43272 1.50166 1.52154 1.62074 2.11378 2.26076 2.44339 3.00406 3.19841 3.60315 3.72751 3.83837 3.97289 4.03770 4.08114 4.25267 4.31795 4.33592 4.37034 4.40532 4.43079 4.50960 4.60712 4.64741 4.73667 4.81400 4.82822 4.85786 4.90850 4.92990 4.97750 4.99085 5.04914 5.14463 5.19875 5.22906 5.24620 5.30605 5.32945 5.45301 5.46352 5.47728 5.49690 5.53454 5.66012 5.98550 6.03562 6.13496 6.39512 6.49201 6.90732 6.95714 7.21318 7.47484 7.52465 8.96435 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.001572 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.353606 B =17810.697961 C =18229.558963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.104 4.104 5 H 0.121 0.879 6 C -0.145 4.145 7 C 0.514 3.486 8 O -0.584 6.584 9 N -0.716 5.716 10 C 0.118 3.882 11 C 0.136 3.864 12 N -0.735 5.735 13 C 0.705 3.295 14 O -0.635 6.635 15 N -0.621 5.621 16 C 0.139 3.861 17 C -0.112 4.112 18 C 0.045 3.955 19 C -0.533 4.533 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.949 3.051 24 H -0.281 1.281 25 H -0.284 1.284 26 H -0.268 1.268 27 C -0.117 4.117 28 C 0.117 3.883 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.417 0.583 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.409 0.591 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.019 0.981 49 H 0.005 0.995 50 H 0.260 0.740 51 H 0.073 0.927 52 H 0.044 0.956 53 H 0.077 0.923 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 -22.671 -2.073 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.138 4.138 4 C -0.125 4.125 5 H 0.139 0.861 6 C -0.202 4.202 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.369 5.369 10 C -0.007 4.007 11 C 0.011 3.989 12 N -0.394 5.394 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.357 5.357 16 C 0.016 3.984 17 C -0.151 4.151 18 C 0.026 3.974 19 C -0.571 4.571 20 H 0.070 0.930 21 C -0.184 4.184 22 N -0.554 5.554 23 Si 0.775 3.225 24 H -0.207 1.207 25 H -0.210 1.210 26 H -0.193 1.193 27 C -0.155 4.155 28 C -0.005 4.005 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.255 0.745 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.248 0.752 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.038 0.962 49 H 0.024 0.976 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.063 0.937 53 H 0.095 0.905 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.088 -22.632 -2.089 31.004 hybrid contribution 0.820 1.282 0.662 1.660 sum -20.268 -21.349 -1.427 29.472 Atomic orbital electron populations 1.21791 0.96010 1.02000 1.01535 1.21579 0.95851 0.95268 1.03100 1.21407 0.92767 0.97688 1.01940 1.21384 0.97364 0.91286 1.02477 0.86066 1.21863 1.02023 1.02055 0.94257 1.21318 0.81695 0.92414 0.74407 1.90705 1.56405 1.48076 1.51184 1.45731 1.07387 1.09104 1.74707 1.21256 0.91985 0.84523 1.02917 1.21200 0.92356 0.82466 1.02894 1.44900 1.04618 1.10021 1.79878 1.15906 0.82997 0.82750 0.77733 1.90845 1.56216 1.45095 1.59596 1.47397 1.08041 1.05601 1.74674 1.21342 0.79344 0.98488 0.99233 1.21707 1.02882 0.94846 0.95666 1.18609 0.91176 0.92230 0.95354 1.21594 0.96999 1.19915 1.18619 0.93023 1.25682 0.96888 0.98811 0.97043 1.69973 1.05295 1.43482 1.36687 0.85698 0.78033 0.79602 0.79153 1.20665 1.20967 1.19267 1.21874 0.97942 0.97697 0.98015 1.21820 0.92073 0.86319 1.00321 0.93183 0.93257 0.91804 0.90974 0.90558 0.92924 0.92912 0.89383 0.90764 0.93228 0.74545 0.91202 0.90763 0.90761 0.91281 0.75203 0.91311 0.91976 0.90867 0.96187 0.97650 0.93062 0.90857 0.93684 0.90502 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.91 71.98 0.71 -0.69 16 2 C -0.12 -0.96 5.69 30.59 0.17 -0.79 16 3 C -0.10 -1.25 4.03 30.59 0.12 -1.13 16 4 C -0.10 -1.03 2.72 -11.54 -0.03 -1.06 16 5 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 6 C -0.14 -0.96 8.84 71.98 0.64 -0.32 16 7 C 0.51 8.61 7.15 87.66 0.63 9.23 16 8 O -0.58 -15.23 15.92 -3.06 -0.05 -15.28 16 9 N -0.72 -9.07 5.45 -463.04 -2.52 -11.59 16 10 C 0.12 1.79 5.79 86.38 0.50 2.29 16 11 C 0.14 2.43 5.79 86.38 0.50 2.93 16 12 N -0.73 -16.94 5.47 -478.53 -2.62 -19.55 16 13 C 0.70 23.49 8.30 179.05 1.49 24.97 16 14 O -0.64 -25.88 15.77 -3.98 -0.06 -25.94 16 15 N -0.62 -21.39 2.98 -837.73 -2.50 -23.88 16 16 C 0.14 5.59 6.41 86.22 0.55 6.15 16 17 C -0.11 -5.31 5.14 30.53 0.16 -5.15 16 18 C 0.04 2.13 2.07 -11.51 -0.02 2.11 16 19 C -0.53 -28.58 8.56 25.60 0.22 -28.36 16 20 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 21 C 0.01 0.79 5.30 84.65 0.45 1.24 16 22 N -0.91 -51.82 11.30 21.45 0.24 -51.58 16 23 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 C -0.12 -4.32 5.30 30.67 0.16 -4.16 16 28 C 0.12 3.39 6.39 86.36 0.55 3.94 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.45 6.56 -2.38 -0.02 0.44 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.85 7.96 -2.38 -0.02 0.83 16 36 H 0.09 0.33 6.56 -2.39 -0.02 0.31 16 37 H 0.07 0.31 7.56 -2.39 -0.02 0.30 16 38 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.42 2.98 7.89 -92.71 -0.73 2.24 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.41 7.50 5.96 -92.71 -0.55 6.95 16 45 H 0.07 2.87 6.99 -2.39 -0.02 2.85 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.07 3.92 6.03 -2.39 -0.01 3.91 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 51 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 53 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 54 H 0.10 2.10 5.64 -2.39 -0.01 2.08 16 Total: -1.00 -72.91 420.77 0.92 -71.98 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.40 Total: 19.45 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.80 Total: 11.19 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -7.39 Total: -106.61 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.11 Total: -41.23 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.91 0.92 -71.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590099481.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.760 kcal (2) G-P(sol) polarization free energy of solvation -72.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds