Wall clock time and date at job start Tue Mar 31 2020 23:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47355 * 2 1 4 4 C 1.53009 * 109.47297 * 119.99826 * 2 1 3 5 5 N 1.46897 * 109.47158 * 178.05242 * 4 2 1 6 6 C 1.46846 * 110.99949 * 183.78520 * 5 4 2 7 7 C 1.53035 * 109.52194 * 185.83849 * 6 5 4 8 8 C 1.53110 * 109.27928 * 300.81492 * 7 6 5 9 9 N 1.46500 * 109.52431 * 177.56068 * 8 7 6 10 10 C 1.34777 * 119.99956 * 155.00390 * 9 8 7 11 11 O 1.21581 * 120.00208 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99787 * 180.02562 * 10 9 8 13 13 C 1.47021 * 125.65099 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.27476 * 181.02941 * 13 12 10 15 15 C 1.55154 * 102.94065 * 22.19030 * 14 13 12 16 16 O 1.42898 * 111.00606 * 82.57581 * 15 14 13 17 17 C 1.50707 * 111.00505 * 206.38847 * 15 14 13 18 18 H 1.08001 * 119.99410 * 0.02562 * 17 15 14 19 19 C 1.37868 * 120.00180 * 179.97438 * 17 15 14 20 20 N 1.31519 * 120.00287 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00184 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46930 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47361 * 120.00431 * 21 19 17 24 24 H 1.48498 * 109.47341 * 240.00562 * 21 19 17 25 25 C 1.47427 * 125.65038 * 179.71678 * 12 10 9 26 26 C 1.53120 * 109.16088 * 57.65604 * 8 7 6 27 27 C 1.46855 * 111.00043 * 307.99092 * 5 4 2 28 28 H 1.08992 * 109.47302 * 184.95125 * 1 2 3 29 29 H 1.09008 * 109.47195 * 304.94904 * 1 2 3 30 30 H 1.09006 * 109.47278 * 64.94478 * 1 2 3 31 31 H 1.09004 * 109.47230 * 239.99821 * 2 1 3 32 32 H 1.08997 * 109.47532 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47103 * 299.99703 * 3 2 1 34 34 H 1.09001 * 109.47381 * 60.00184 * 3 2 1 35 35 H 1.09000 * 109.46388 * 58.05378 * 4 2 1 36 36 H 1.08996 * 109.46841 * 298.05340 * 4 2 1 37 37 H 1.09003 * 109.46498 * 65.81614 * 6 5 4 38 38 H 1.09005 * 109.45138 * 305.84958 * 6 5 4 39 39 H 1.08998 * 109.50618 * 60.76042 * 7 6 5 40 40 H 1.09000 * 109.50067 * 180.87640 * 7 6 5 41 41 H 1.09004 * 109.52509 * 297.75256 * 8 7 6 42 42 H 0.97003 * 119.99912 * 335.00443 * 9 8 7 43 43 H 1.09008 * 109.88132 * 300.44575 * 13 12 10 44 44 H 1.09003 * 109.88608 * 61.60630 * 13 12 10 45 45 H 1.08993 * 110.72285 * 140.55674 * 14 13 12 46 46 H 1.09002 * 110.71537 * 263.65078 * 14 13 12 47 47 H 0.96698 * 114.00000 * 179.97438 * 16 15 14 48 48 H 0.96997 * 120.00531 * 179.97438 * 20 19 17 49 49 H 1.09004 * 110.36315 * 274.74616 * 25 12 10 50 50 H 1.08998 * 110.36624 * 37.06187 * 25 12 10 51 51 H 1.09003 * 109.50850 * 182.40183 * 26 8 7 52 52 H 1.09008 * 109.53512 * 62.30822 * 26 8 7 53 53 H 1.09000 * 109.46032 * 294.18151 * 27 5 4 54 54 H 1.09002 * 109.45991 * 54.14737 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5082 -0.7621 1.2260 6 6 4.0316 -1.5261 2.3657 7 6 5.5584 -1.4256 2.3908 8 6 6.1231 -1.9784 1.0795 9 7 7.5807 -1.8314 1.0735 10 6 8.3377 -2.6519 0.3183 11 8 7.8110 -3.5144 -0.3576 12 7 9.6787 -2.5169 0.3133 13 6 10.4427 -1.5227 1.0808 14 6 11.9340 -1.7289 0.7413 15 6 11.8812 -2.4551 -0.6288 16 8 11.7119 -1.5213 -1.6972 17 6 13.1126 -3.2975 -0.8415 18 1 13.8811 -3.3314 -0.0834 19 6 13.2575 -4.0255 -2.0033 20 7 12.3214 -3.9846 -2.9262 21 14 14.7842 -5.0692 -2.2672 22 1 15.6791 -4.9440 -1.0888 23 1 14.3888 -6.4902 -2.4393 24 1 15.4981 -4.6033 -3.4832 25 6 10.6228 -3.3460 -0.4579 26 6 5.5253 -1.1974 -0.0941 27 6 3.9995 -1.3045 -0.0473 28 1 -0.3633 -1.0237 0.0887 29 1 -0.3634 0.5887 0.8424 30 1 -0.3634 0.4352 -0.9310 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6484 -1.7383 1.2669 36 1 1.7055 -0.1876 2.1389 37 1 3.7379 -2.5712 2.2679 38 1 3.6255 -1.1199 3.2921 39 1 5.8527 -0.3820 2.5025 40 1 5.9475 -2.0055 3.2278 41 1 5.8620 -3.0326 0.9861 42 1 8.0010 -1.1436 1.6131 43 1 10.1334 -0.5169 0.7960 44 1 10.2811 -1.6741 2.1481 45 1 12.4450 -0.7705 0.6504 46 1 12.4179 -2.3525 1.4930 47 1 11.6737 -1.9288 -2.5733 48 1 12.4235 -4.4965 -3.7437 49 1 10.8693 -4.2531 0.0940 50 1 10.2006 -3.5961 -1.4311 51 1 5.8907 -1.6142 -1.0326 52 1 5.8190 -0.1501 -0.0223 53 1 3.7059 -2.3507 -0.1337 54 1 3.5701 -0.7375 -0.8733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591903232.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:00 Heat of formation + Delta-G solvation = -106.500046 kcal Electronic energy + Delta-G solvation = -30872.250398 eV Core-core repulsion = 26842.388613 eV Total energy + Delta-G solvation = -4029.861785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42836 -40.26694 -39.03881 -37.16579 -36.06091 -35.06404 -34.15194 -32.44789 -31.85734 -31.21534 -29.54195 -27.92066 -27.36417 -26.39799 -24.42777 -24.36167 -23.36610 -21.49455 -21.26738 -20.78102 -20.39239 -19.27256 -18.79323 -17.66462 -17.07921 -16.83168 -16.71220 -16.28332 -16.08399 -15.97105 -15.61511 -15.21702 -15.15668 -14.81162 -14.65084 -14.54751 -14.44503 -13.98013 -13.69632 -13.50143 -13.41572 -13.31184 -13.23244 -13.01683 -12.86931 -12.78235 -12.54507 -12.33105 -12.29761 -12.19903 -12.18988 -12.09485 -12.03506 -11.81783 -11.60229 -11.53727 -11.29475 -11.21334 -11.15960 -10.65501 -10.33195 -10.12285 -9.31573 -9.25519 -8.25735 -6.42793 1.40774 1.44016 1.55141 1.69016 2.17158 2.37953 2.90864 3.00336 3.09234 3.70116 3.78310 3.81417 3.97240 4.03461 4.10600 4.13398 4.19151 4.22941 4.27901 4.34836 4.38577 4.47070 4.58292 4.61419 4.65429 4.75583 4.76362 4.76650 4.79191 4.87626 4.91434 4.97884 5.03910 5.05278 5.09165 5.10161 5.13556 5.17858 5.26191 5.31306 5.32777 5.40975 5.45753 5.47605 5.55511 5.60759 5.77077 6.02893 6.09670 6.16524 6.21690 6.65066 7.09539 7.30066 7.39174 7.60237 8.80050 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025112 B = 0.002123 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.727718 B =13186.369756 C =13479.425393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.134 4.134 4 C 0.062 3.938 5 N -0.536 5.536 6 C 0.061 3.939 7 C -0.110 4.110 8 C 0.163 3.837 9 N -0.724 5.724 10 C 0.710 3.290 11 O -0.646 6.646 12 N -0.634 5.634 13 C 0.108 3.892 14 C -0.111 4.111 15 C 0.232 3.768 16 O -0.590 6.590 17 C -0.554 4.554 18 H 0.072 0.928 19 C 0.022 3.978 20 N -0.919 5.919 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.280 1.280 25 C 0.126 3.874 26 C -0.121 4.121 27 C 0.063 3.937 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.408 0.592 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.376 0.624 48 H 0.270 0.730 49 H 0.041 0.959 50 H 0.035 0.965 51 H 0.037 0.963 52 H 0.076 0.924 53 H 0.022 0.978 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.562 9.956 12.740 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.192 4.192 4 C -0.065 4.065 5 N -0.260 5.260 6 C -0.067 4.067 7 C -0.148 4.148 8 C 0.058 3.942 9 N -0.380 5.380 10 C 0.412 3.588 11 O -0.529 6.529 12 N -0.370 5.370 13 C -0.014 4.014 14 C -0.149 4.149 15 C 0.191 3.809 16 O -0.399 6.399 17 C -0.592 4.592 18 H 0.090 0.910 19 C -0.178 4.178 20 N -0.559 5.559 21 Si 0.792 3.208 22 H -0.185 1.185 23 H -0.210 1.210 24 H -0.206 1.206 25 C 0.002 3.998 26 C -0.160 4.160 27 C -0.066 4.066 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.245 0.755 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.227 0.773 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.095 0.905 53 H 0.041 0.959 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.888 10.179 12.654 25.676 hybrid contribution 0.759 -2.018 -1.298 2.517 sum -19.129 8.161 11.356 23.695 Atomic orbital electron populations 1.21781 0.94053 1.01885 1.02357 1.21257 0.96228 0.97146 0.97383 1.21683 1.01303 0.94895 1.01291 1.22215 0.86064 0.98811 0.99446 1.62024 1.09073 1.53012 1.01927 1.22062 0.93999 0.95849 0.94840 1.21796 0.95210 1.02894 0.94902 1.20899 0.77490 0.99140 0.96678 1.45023 1.06686 1.37029 1.49245 1.15780 0.80443 0.81939 0.80634 1.90834 1.72690 1.40161 1.49213 1.47850 1.03491 1.36833 1.48815 1.22110 0.91761 0.91661 0.95868 1.22599 0.94777 1.01700 0.95780 1.19902 0.89862 0.85836 0.85295 1.86045 1.96091 1.38453 1.19333 1.21881 1.05372 1.27811 1.04117 0.90998 1.25878 0.99322 0.97047 0.95553 1.69702 1.34761 1.42671 1.08796 0.85367 0.79190 0.77865 0.78362 1.18548 1.20981 1.20562 1.22720 0.89957 0.93761 0.93343 1.21905 0.95402 1.01005 0.97690 1.22023 0.93811 0.97420 0.93341 0.92747 0.91858 0.92333 0.91961 0.92774 0.93245 0.92413 0.95179 0.89421 0.95245 0.88021 0.89229 0.89680 0.92749 0.75510 0.91034 0.89038 0.89674 0.89171 0.77294 0.92062 0.94023 0.94662 0.94368 0.90485 0.95934 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 71.98 0.66 -0.88 16 2 C -0.10 -1.37 2.43 -10.79 -0.03 -1.40 16 3 C -0.13 -1.86 8.98 71.98 0.65 -1.21 16 4 C 0.06 0.86 4.55 86.31 0.39 1.25 16 5 N -0.54 -8.99 4.08 -896.34 -3.66 -12.65 16 6 C 0.06 0.93 5.46 86.33 0.47 1.40 16 7 C -0.11 -1.85 5.57 30.64 0.17 -1.68 16 8 C 0.16 4.22 2.52 45.07 0.11 4.34 16 9 N -0.72 -21.32 5.04 -457.44 -2.31 -23.63 16 10 C 0.71 29.52 8.46 179.05 1.51 31.04 16 11 O -0.65 -33.04 16.26 -3.97 -0.06 -33.11 16 12 N -0.63 -26.49 3.32 -829.30 -2.76 -29.24 16 13 C 0.11 3.50 6.15 86.73 0.53 4.03 16 14 C -0.11 -4.16 6.12 31.78 0.19 -3.97 16 15 C 0.23 11.35 0.89 -10.07 -0.01 11.34 16 16 O -0.59 -31.19 13.19 -148.98 -1.97 -33.16 16 17 C -0.55 -28.93 8.25 25.60 0.21 -28.71 16 18 H 0.07 3.60 7.77 -2.91 -0.02 3.58 16 19 C 0.02 1.17 5.29 84.65 0.45 1.62 16 20 N -0.92 -51.06 10.72 21.44 0.23 -50.83 16 21 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.13 6.36 5.64 86.93 0.49 6.85 16 26 C -0.12 -3.13 5.67 30.64 0.17 -2.96 16 27 C 0.06 1.32 4.97 86.32 0.43 1.75 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.98 6.07 -2.38 -0.01 0.97 16 32 H 0.05 0.91 7.55 -2.39 -0.02 0.89 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 1.13 8.12 -2.38 -0.02 1.11 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.73 7.58 -2.38 -0.02 1.71 16 42 H 0.41 9.41 7.59 -92.71 -0.70 8.70 16 43 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.09 3.12 8.02 -2.39 -0.02 3.10 16 47 H 0.38 21.15 6.93 -74.06 -0.51 20.64 16 48 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 49 H 0.04 2.16 8.04 -2.39 -0.02 2.14 16 50 H 0.03 2.06 7.64 -2.39 -0.02 2.04 16 51 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 53 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 54 H 0.09 1.75 5.70 -2.39 -0.01 1.74 16 Total: -1.00 -67.79 413.20 -2.42 -70.22 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.34 Total: 45.49 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.42 Total: 22.80 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -8.49 Total: -116.36 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -2.03 Total: -66.27 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.79 -2.42 -70.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591903232.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.285 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds