Wall clock time and date at job start Tue Mar 31 2020 23:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47150 * 2 1 4 4 C 1.53004 * 109.46986 * 119.99673 * 2 1 3 5 5 N 1.46903 * 109.47170 * 174.70986 * 4 2 1 6 6 C 1.47844 * 110.99410 * 285.30062 * 5 4 2 7 7 C 1.54906 * 104.79323 * 213.63762 * 6 5 4 8 8 C 1.55135 * 101.65644 * 37.06862 * 7 6 5 9 9 H 1.09009 * 110.70342 * 82.72961 * 8 7 6 10 10 C 1.53002 * 110.86209 * 205.89402 * 8 7 6 11 11 N 1.46494 * 109.47248 * 288.69041 * 10 8 7 12 12 C 1.34775 * 120.00169 * 179.97438 * 11 10 8 13 13 O 1.21582 * 119.99956 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99657 * 179.97438 * 12 11 10 15 15 C 1.47015 * 125.65460 * 0.02909 * 14 12 11 16 16 C 1.54324 * 107.27386 * 181.02173 * 15 14 12 17 17 C 1.55156 * 102.94270 * 22.19053 * 16 15 14 18 18 O 1.42893 * 111.00489 * 82.57394 * 17 16 15 19 19 C 1.50698 * 111.00295 * 206.39102 * 17 16 15 20 20 H 1.08003 * 120.00326 * 359.97438 * 19 17 16 21 21 C 1.37875 * 119.99859 * 179.97438 * 19 17 16 22 22 N 1.31512 * 120.00287 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 120.00045 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47027 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46860 * 120.00324 * 23 21 19 26 26 H 1.48508 * 109.47125 * 240.00006 * 23 21 19 27 27 C 1.47424 * 125.64266 * 179.71556 * 14 12 11 28 28 C 1.47436 * 110.99928 * 164.45909 * 5 4 2 29 29 H 1.08996 * 109.47115 * 299.60909 * 1 2 3 30 30 H 1.08999 * 109.46691 * 59.61016 * 1 2 3 31 31 H 1.09005 * 109.46736 * 179.60771 * 1 2 3 32 32 H 1.09001 * 109.47012 * 239.99127 * 2 1 3 33 33 H 1.09003 * 109.47196 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46555 * 299.99411 * 3 2 1 35 35 H 1.08991 * 109.47757 * 59.99629 * 3 2 1 36 36 H 1.09005 * 109.46792 * 294.70764 * 4 2 1 37 37 H 1.08999 * 109.47446 * 54.70451 * 4 2 1 38 38 H 1.09001 * 110.37594 * 332.46398 * 6 5 4 39 39 H 1.08999 * 110.37438 * 94.81227 * 6 5 4 40 40 H 1.09006 * 110.99117 * 278.97918 * 7 6 5 41 41 H 1.08996 * 111.02910 * 155.17985 * 7 6 5 42 42 H 1.09006 * 109.46510 * 48.68477 * 10 8 7 43 43 H 1.08996 * 109.47389 * 168.68572 * 10 8 7 44 44 H 0.97011 * 120.00204 * 359.97438 * 11 10 8 45 45 H 1.09006 * 109.87880 * 300.43610 * 15 14 12 46 46 H 1.09005 * 109.88320 * 61.44578 * 15 14 12 47 47 H 1.08992 * 110.72337 * 140.55466 * 16 15 14 48 48 H 1.09006 * 110.71878 * 263.65168 * 16 15 14 49 49 H 0.96698 * 114.00018 * 179.97438 * 18 17 16 50 50 H 0.96995 * 120.00568 * 179.97438 * 22 21 19 51 51 H 1.08997 * 110.36872 * 274.74819 * 27 14 12 52 52 H 1.09004 * 110.36673 * 37.07201 * 27 14 12 53 53 H 1.08995 * 109.88923 * 242.66005 * 28 5 4 54 54 H 1.09005 * 109.89445 * 3.68799 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5035 -0.8328 1.1872 6 6 3.9150 -1.8693 0.2166 7 6 5.2044 -2.4833 0.8165 8 6 4.8792 -2.4752 2.3333 9 1 4.2808 -3.3452 2.6038 10 6 6.1622 -2.4236 3.1654 11 7 6.8545 -3.7115 3.0756 12 6 8.0163 -3.8993 3.7325 13 8 8.4900 -2.9997 4.3991 14 7 8.6529 -5.0844 3.6502 15 6 8.1947 -6.2519 2.8832 16 6 9.2245 -7.3795 3.1060 17 6 9.9074 -6.9684 4.4371 18 8 9.1295 -7.3838 5.5615 19 6 11.3073 -7.5203 4.5189 20 1 11.7015 -8.1153 3.7084 21 6 12.0850 -7.2655 5.6286 22 7 11.6053 -6.5406 6.6154 23 14 13.8201 -7.9502 5.7303 24 1 14.1190 -8.7260 4.4999 25 1 14.7874 -6.8304 5.8563 26 1 13.9333 -8.8377 6.9156 27 6 9.9275 -5.4225 4.3094 28 6 4.0636 -1.1766 2.5070 29 1 -0.3633 0.5077 0.8934 30 1 -0.3633 0.5199 -0.8865 31 1 -0.3633 -1.0277 -0.0070 32 1 1.8934 -0.5140 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6768 1.9564 0.8898 36 1 1.7561 -0.1554 2.1367 37 1 1.6013 -1.7178 1.2981 38 1 3.1403 -2.6304 0.1229 39 1 4.1250 -1.4188 -0.7535 40 1 6.0715 -1.8593 0.5997 41 1 5.3580 -3.5003 0.4555 42 1 6.8110 -1.6350 2.7841 43 1 5.9123 -2.2172 4.2060 44 1 6.4767 -4.4293 2.5434 45 1 7.2149 -6.5689 3.2406 46 1 8.1394 -6.0011 1.8238 47 1 8.7253 -8.3427 3.2101 48 1 9.9478 -7.4077 2.2910 49 1 9.5167 -7.1492 6.4159 50 1 12.1522 -6.3617 7.3963 51 1 10.7689 -5.1011 3.6957 52 1 9.9784 -4.9614 5.2959 53 1 4.7141 -0.3740 2.8543 54 1 3.2567 -1.3356 3.2224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591983849.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:23 Heat of formation + Delta-G solvation = -108.200585 kcal Electronic energy + Delta-G solvation = -30183.102412 eV Core-core repulsion = 26153.166886 eV Total energy + Delta-G solvation = -4029.935526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.30973 -40.30856 -39.07382 -37.07164 -36.06530 -35.42795 -34.14937 -32.48532 -31.49550 -30.38450 -29.54599 -27.91080 -27.52935 -26.49868 -25.17224 -23.98552 -22.31821 -21.60698 -21.41941 -20.74788 -20.66932 -19.29083 -18.81994 -17.55014 -17.08008 -16.88363 -16.83813 -16.38834 -16.16017 -16.06068 -15.38031 -15.25803 -14.78463 -14.65874 -14.62012 -14.55349 -14.47007 -14.14801 -13.73516 -13.66392 -13.48159 -13.30690 -13.08959 -13.01788 -12.86685 -12.71577 -12.52143 -12.50328 -12.29869 -12.18410 -12.09582 -12.08533 -11.88534 -11.76966 -11.68288 -11.54670 -11.37324 -11.30398 -11.20838 -10.65217 -10.34068 -10.18020 -9.31159 -9.22916 -8.25492 -6.42547 1.41244 1.44668 1.55619 1.68674 2.16032 2.38405 2.99420 3.00913 3.09545 3.59248 3.59975 3.81128 3.87299 3.98540 4.11199 4.13107 4.19125 4.32619 4.33821 4.35399 4.39531 4.40594 4.51659 4.63217 4.67524 4.74268 4.75809 4.76653 4.83902 4.87691 4.88755 4.96056 5.05537 5.06869 5.09424 5.10579 5.12582 5.18255 5.29519 5.31088 5.31758 5.39829 5.45929 5.48782 5.51902 5.54733 5.77431 6.02642 6.04240 6.17574 6.19158 6.65355 7.07729 7.30412 7.39402 7.58062 8.80387 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.035123 B = 0.001819 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.998480 B =15391.597442 C =15630.704592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.055 3.945 5 N -0.535 5.535 6 C 0.047 3.953 7 C -0.122 4.122 8 C -0.107 4.107 9 H 0.093 0.907 10 C 0.154 3.846 11 N -0.726 5.726 12 C 0.709 3.291 13 O -0.647 6.647 14 N -0.634 5.634 15 C 0.108 3.892 16 C -0.111 4.111 17 C 0.231 3.769 18 O -0.590 6.590 19 C -0.555 4.555 20 H 0.072 0.928 21 C 0.024 3.976 22 N -0.919 5.919 23 Si 0.966 3.034 24 H -0.262 1.262 25 H -0.284 1.284 26 H -0.280 1.280 27 C 0.126 3.874 28 C 0.053 3.947 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.408 0.592 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.377 0.623 50 H 0.270 0.730 51 H 0.042 0.958 52 H 0.035 0.965 53 H 0.073 0.927 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.123 8.594 -15.365 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.192 4.192 4 C -0.073 4.073 5 N -0.259 5.259 6 C -0.081 4.081 7 C -0.160 4.160 8 C -0.127 4.127 9 H 0.111 0.889 10 C 0.030 3.970 11 N -0.383 5.383 12 C 0.411 3.589 13 O -0.530 6.530 14 N -0.370 5.370 15 C -0.014 4.014 16 C -0.148 4.148 17 C 0.190 3.810 18 O -0.399 6.399 19 C -0.593 4.593 20 H 0.090 0.910 21 C -0.177 4.177 22 N -0.559 5.559 23 Si 0.792 3.208 24 H -0.186 1.186 25 H -0.210 1.210 26 H -0.206 1.206 27 C 0.002 3.998 28 C -0.076 4.076 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.245 0.755 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.227 0.773 50 H 0.080 0.920 51 H 0.060 0.940 52 H 0.054 0.946 53 H 0.091 0.909 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.023 9.656 -15.354 27.766 hybrid contribution 1.175 -0.867 1.232 1.910 sum -19.848 8.789 -14.123 25.897 Atomic orbital electron populations 1.21808 0.94422 1.01902 1.02173 1.21055 0.95560 0.96703 0.97430 1.21676 1.01292 0.95309 1.00962 1.22452 0.86731 0.99183 0.98944 1.63551 1.10401 1.45690 1.06293 1.23065 0.96010 0.92485 0.96516 1.22793 0.98013 1.01995 0.93168 1.22515 0.94701 0.99739 0.95763 0.88861 1.21132 0.92320 0.83892 0.99664 1.44888 1.22417 1.17400 1.53632 1.15771 0.81230 0.81565 0.80383 1.90845 1.69742 1.43871 1.48552 1.47845 1.24964 1.11766 1.52439 1.22109 0.98287 0.85052 0.95933 1.22597 0.97771 0.98065 0.96409 1.19906 0.89319 0.87257 0.84476 1.86041 1.52577 1.82979 1.18298 1.21887 0.98961 1.33760 1.04679 0.91000 1.25862 1.02581 0.94108 0.95116 1.69695 1.39074 1.38820 1.08345 0.85379 0.79035 0.78024 0.78410 1.18563 1.20985 1.20558 1.22726 0.82605 0.99482 0.94972 1.22727 0.98070 0.95523 0.91233 0.92558 0.92104 0.92543 0.91561 0.92810 0.93004 0.93311 0.91027 0.94295 0.92684 0.90052 0.91401 0.89411 0.92711 0.93022 0.75525 0.90992 0.89050 0.89645 0.89180 0.77277 0.92033 0.93981 0.94602 0.90857 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.09 -1.02 2.97 -10.79 -0.03 -1.05 16 3 C -0.13 -1.72 9.08 71.98 0.65 -1.07 16 4 C 0.05 0.70 4.06 86.30 0.35 1.05 16 5 N -0.54 -8.00 4.59 -885.53 -4.06 -12.06 16 6 C 0.05 0.61 5.99 86.77 0.52 1.13 16 7 C -0.12 -1.75 6.45 31.98 0.21 -1.55 16 8 C -0.11 -1.73 2.95 -9.61 -0.03 -1.76 16 9 H 0.09 1.34 8.14 -2.38 -0.02 1.33 16 10 C 0.15 3.77 4.98 86.38 0.43 4.20 16 11 N -0.73 -20.56 5.43 -478.55 -2.60 -23.16 16 12 C 0.71 29.04 8.49 179.05 1.52 30.56 16 13 O -0.65 -32.91 16.60 -3.97 -0.07 -32.97 16 14 N -0.63 -26.12 3.32 -829.31 -2.76 -28.88 16 15 C 0.11 3.42 6.15 86.73 0.53 3.95 16 16 C -0.11 -4.09 6.12 31.78 0.19 -3.90 16 17 C 0.23 11.21 0.89 -10.07 -0.01 11.20 16 18 O -0.59 -30.82 13.19 -148.98 -1.97 -32.79 16 19 C -0.55 -28.79 8.25 25.60 0.21 -28.58 16 20 H 0.07 3.58 7.77 -2.91 -0.02 3.56 16 21 C 0.02 1.24 5.29 84.65 0.45 1.69 16 22 N -0.92 -50.74 10.72 21.45 0.23 -50.51 16 23 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.13 6.30 5.64 86.93 0.49 6.79 16 28 C 0.05 0.83 6.44 86.65 0.56 1.39 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.80 7.57 -2.39 -0.02 0.79 16 33 H 0.05 0.84 7.76 -2.39 -0.02 0.82 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.92 7.87 -2.38 -0.02 0.90 16 37 H 0.04 0.47 7.69 -2.39 -0.02 0.45 16 38 H 0.05 0.64 7.53 -2.39 -0.02 0.62 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.18 7.95 -2.38 -0.02 1.16 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.49 8.01 -2.38 -0.02 1.47 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.41 8.90 7.46 -92.70 -0.69 8.20 16 45 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 48 H 0.09 3.07 8.02 -2.38 -0.02 3.05 16 49 H 0.38 20.95 6.93 -74.06 -0.51 20.43 16 50 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 51 H 0.04 2.17 8.04 -2.39 -0.02 2.15 16 52 H 0.04 2.08 7.64 -2.39 -0.02 2.06 16 53 H 0.07 1.31 7.82 -2.39 -0.02 1.29 16 54 H 0.07 0.93 7.47 -2.38 -0.02 0.92 16 Total: -1.00 -67.38 419.19 -2.82 -70.20 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -0.33 Total: 42.94 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 6.71 Total: 23.37 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -9.19 Total: -114.61 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -2.03 Total: -65.76 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.38 -2.82 -70.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591983849.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.996 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds