Wall clock time and date at job start Tue Mar 31 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47018 * 2 1 4 4 C 1.52998 * 109.47042 * 120.00091 * 2 1 3 5 5 H 1.09004 * 109.47930 * 59.97796 * 4 2 1 6 6 C 1.53093 * 109.48091 * 179.97438 * 4 2 1 7 7 C 1.53171 * 109.16028 * 177.60416 * 6 4 2 8 8 H 1.09002 * 109.62259 * 62.93364 * 7 6 4 9 9 N 1.46503 * 109.54321 * 183.15510 * 7 6 4 10 10 C 1.34777 * 120.00367 * 204.56054 * 9 7 6 11 11 O 1.21594 * 119.99842 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00189 * 180.02562 * 10 9 7 13 13 C 1.46494 * 119.99822 * 179.97438 * 12 10 9 14 14 C 1.53035 * 109.46020 * 275.02089 * 13 12 10 15 15 C 1.53202 * 109.31362 * 178.60080 * 14 13 12 16 16 N 1.46925 * 108.76123 * 54.65879 * 15 14 13 17 17 C 1.36937 * 120.63069 * 126.40577 * 16 15 14 18 18 H 1.08007 * 119.99775 * 332.60669 * 17 16 15 19 19 C 1.38806 * 120.00162 * 152.60728 * 17 16 15 20 20 N 1.31620 * 120.00162 * 159.34427 * 19 17 16 21 21 Si 1.86804 * 120.00091 * 339.34300 * 19 17 16 22 22 H 1.48500 * 109.47090 * 92.94323 * 21 19 17 23 23 H 1.48494 * 109.47526 * 212.94509 * 21 19 17 24 24 H 1.48497 * 109.46951 * 332.94633 * 21 19 17 25 25 C 1.46933 * 118.74062 * 306.38361 * 16 15 14 26 26 C 1.53045 * 109.46005 * 154.96936 * 13 12 10 27 27 C 1.53178 * 109.04157 * 303.01642 * 7 6 4 28 28 C 1.53098 * 109.15604 * 56.98485 * 27 7 6 29 29 O 1.42900 * 109.48840 * 299.94842 * 4 2 1 30 30 H 1.08999 * 109.47077 * 300.00215 * 1 2 3 31 31 H 1.09007 * 109.46880 * 59.99900 * 1 2 3 32 32 H 1.09003 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46888 * 240.00544 * 2 1 3 34 34 H 1.08997 * 109.47489 * 299.99899 * 3 2 1 35 35 H 1.09002 * 109.46498 * 60.00177 * 3 2 1 36 36 H 1.08998 * 109.46763 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.51740 * 57.69831 * 6 4 2 38 38 H 1.09002 * 109.57155 * 297.54247 * 6 4 2 39 39 H 0.97003 * 119.99883 * 24.55420 * 9 7 6 40 40 H 0.96996 * 119.99649 * 359.97438 * 12 10 9 41 41 H 1.08999 * 109.46355 * 35.00072 * 13 12 10 42 42 H 1.08998 * 109.50230 * 298.56684 * 14 13 12 43 43 H 1.09005 * 109.49838 * 58.67120 * 14 13 12 44 44 H 1.08998 * 109.59823 * 294.87192 * 15 14 13 45 45 H 1.08995 * 109.70144 * 174.50946 * 15 14 13 46 46 H 0.97001 * 119.99929 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58062 * 293.82462 * 25 16 15 48 48 H 1.08999 * 109.70220 * 173.46538 * 25 16 15 49 49 H 1.09003 * 109.49489 * 301.33713 * 26 13 12 50 50 H 1.08996 * 109.49605 * 61.40052 * 26 13 12 51 51 H 1.08994 * 109.52259 * 297.08031 * 27 7 6 52 52 H 1.09001 * 109.57749 * 176.91598 * 27 7 6 53 53 H 1.08996 * 109.48397 * 62.37475 * 28 27 7 54 54 H 1.09005 * 109.47664 * 182.41204 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -1.7489 1.2495 6 6 3.5709 -0.7220 1.2491 7 6 4.0734 -1.3924 2.5314 8 1 3.7518 -2.4338 2.5502 9 7 5.5365 -1.3306 2.5758 10 6 6.2277 -2.2364 3.2956 11 8 5.6371 -3.1047 3.9086 12 7 7.5737 -2.1792 3.3368 13 6 8.3250 -3.1634 4.1197 14 6 8.4064 -2.7014 5.5764 15 6 9.1624 -3.7498 6.3989 16 7 10.4675 -3.9931 5.7695 17 6 11.6234 -3.8853 6.4958 18 1 11.6640 -3.2277 7.3517 19 6 12.7428 -4.6211 6.1322 20 7 13.9374 -4.2453 6.5371 21 14 12.5538 -6.1448 5.0680 22 1 12.7173 -5.7741 3.6393 23 1 13.5887 -7.1416 5.4424 24 1 11.2048 -6.7297 5.2763 25 6 10.5089 -4.3548 4.3460 26 6 9.7375 -3.2999 3.5467 27 6 3.4926 -0.6548 3.7417 28 6 1.9646 -0.6568 3.6454 29 8 1.5648 -0.0472 2.4162 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.9355 0.3044 1.2077 38 1 3.9358 -1.2734 0.3826 39 1 6.0077 -0.6378 2.0870 40 1 8.0448 -1.4863 2.8482 41 1 7.8192 -4.1278 4.0723 42 1 8.9343 -1.7491 5.6271 43 1 7.3998 -2.5818 5.9770 44 1 8.5902 -4.6771 6.4239 45 1 9.3093 -3.3836 7.4150 46 1 14.7196 -4.7598 6.2832 47 1 10.0464 -5.3315 4.2036 48 1 11.5436 -4.3872 4.0050 49 1 9.6783 -3.6063 2.5022 50 1 10.2524 -2.3418 3.6161 51 1 3.8557 0.3728 3.7506 52 1 3.8004 -1.1579 4.6583 53 1 1.5997 -1.6833 3.6773 54 1 1.5470 -0.0962 4.4818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611315135.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:55 Heat of formation + Delta-G solvation = -92.181364 kcal Electronic energy + Delta-G solvation = -30597.952957 eV Core-core repulsion = 26568.712077 eV Total energy + Delta-G solvation = -4029.240880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.50535 -40.51603 -39.26921 -36.65041 -36.01696 -35.82022 -34.13099 -32.74788 -31.97878 -31.21969 -30.98177 -27.98412 -26.93373 -25.61332 -24.62358 -24.49512 -23.53301 -22.01953 -21.60291 -21.19422 -20.70512 -19.44982 -18.67509 -17.80858 -17.34278 -17.08754 -16.67551 -16.26040 -15.99634 -15.94466 -15.80513 -15.43725 -15.30536 -15.07658 -15.00173 -14.70186 -14.54485 -14.48818 -14.21336 -13.98898 -13.75555 -13.49821 -13.38347 -12.91163 -12.72214 -12.59548 -12.56639 -12.53376 -12.28180 -12.14909 -12.03613 -11.86672 -11.77822 -11.67566 -11.56755 -11.54120 -11.42934 -11.33157 -11.11686 -10.71973 -10.51080 -10.29503 -9.76411 -8.97003 -8.16153 -5.48543 1.29363 1.43045 1.51686 1.66116 2.17175 2.41513 2.82696 3.05675 3.20387 3.35377 3.59791 3.77857 3.78578 3.85410 3.99472 4.07369 4.13332 4.14393 4.23399 4.29717 4.31980 4.36554 4.45992 4.48295 4.62959 4.65184 4.69786 4.73404 4.76559 4.85128 4.87406 4.90894 4.92645 4.98994 5.03261 5.04600 5.06993 5.10266 5.12628 5.16190 5.21120 5.26982 5.40289 5.48811 5.53110 5.56999 5.58857 5.86570 6.03772 6.12852 6.29626 6.90435 7.13035 7.61110 7.61706 8.01758 9.03557 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.001961 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.866041 B =14275.656878 C =14557.379108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.096 3.904 5 H 0.058 0.942 6 C -0.148 4.148 7 C 0.164 3.836 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.701 3.299 11 O -0.633 6.633 12 N -0.727 5.727 13 C 0.180 3.820 14 C -0.127 4.127 15 C 0.147 3.853 16 N -0.618 5.618 17 C -0.248 4.248 18 H 0.052 0.948 19 C -0.033 4.033 20 N -0.955 5.955 21 Si 0.944 3.056 22 H -0.268 1.268 23 H -0.311 1.311 24 H -0.266 1.266 25 C 0.121 3.879 26 C -0.126 4.126 27 C -0.161 4.161 28 C 0.067 3.933 29 O -0.382 6.382 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.058 0.942 46 H 0.262 0.738 47 H 0.031 0.969 48 H 0.059 0.941 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.057 0.943 53 H 0.050 0.950 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.859 11.696 -17.566 34.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.037 3.963 5 H 0.076 0.924 6 C -0.186 4.186 7 C 0.059 3.941 8 H 0.084 0.916 9 N -0.384 5.384 10 C 0.401 3.599 11 O -0.515 6.515 12 N -0.382 5.382 13 C 0.074 3.926 14 C -0.167 4.167 15 C 0.021 3.979 16 N -0.343 5.343 17 C -0.378 4.378 18 H 0.070 0.930 19 C -0.228 4.228 20 N -0.601 5.601 21 Si 0.773 3.227 22 H -0.194 1.194 23 H -0.240 1.240 24 H -0.191 1.191 25 C -0.004 4.004 26 C -0.166 4.166 27 C -0.200 4.200 28 C -0.010 4.010 29 O -0.301 6.301 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.091 0.909 51 H 0.095 0.905 52 H 0.076 0.924 53 H 0.069 0.931 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -27.359 11.048 -17.020 34.063 hybrid contribution 1.197 -0.585 -0.072 1.334 sum -26.163 10.464 -17.092 32.956 Atomic orbital electron populations 1.21759 0.94627 1.01757 1.01978 1.21183 0.96575 0.97158 0.95475 1.21813 1.01196 0.95325 1.01812 1.22179 0.91819 0.95900 0.86355 0.92447 1.22526 0.96668 1.02748 0.96687 1.20792 0.78256 0.99630 0.95438 0.91640 1.45036 1.06815 1.33078 1.53425 1.16148 0.81994 0.81940 0.79826 1.90899 1.69665 1.40048 1.50841 1.45106 1.04214 1.34928 1.53959 1.20487 0.90890 0.91339 0.89838 1.22201 0.99442 0.99370 0.95694 1.21007 0.84901 0.96103 0.95848 1.44504 1.02268 1.82029 1.05505 1.18856 0.88698 1.19133 1.11113 0.92981 1.25883 0.94900 1.01057 1.00982 1.69961 0.98265 1.40807 1.51085 0.85951 0.76910 0.80913 0.78916 1.19425 1.24029 1.19081 1.21373 0.99037 0.96128 0.83883 1.22153 0.93968 1.00731 0.99718 1.22553 0.97191 1.01500 0.98752 1.22542 0.92735 0.98521 0.87230 1.87922 1.74681 1.53882 1.13603 0.92986 0.91902 0.92828 0.88737 0.92176 0.93085 0.92018 0.89024 0.89085 0.75289 0.75416 0.91589 0.91988 0.91995 0.95393 0.92378 0.92916 0.95088 0.92299 0.89238 0.90853 0.90495 0.92386 0.93134 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.05 71.98 0.65 -0.81 16 2 C -0.09 -0.82 2.81 -10.79 -0.03 -0.85 16 3 C -0.14 -1.36 8.70 71.98 0.63 -0.74 16 4 C 0.10 1.16 2.38 30.62 0.07 1.23 16 5 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 6 C -0.15 -1.63 4.60 30.68 0.14 -1.48 16 7 C 0.16 2.75 2.54 45.11 0.11 2.87 16 8 H 0.07 1.43 7.59 -2.39 -0.02 1.41 16 9 N -0.73 -12.50 5.09 -457.23 -2.33 -14.83 16 10 C 0.70 18.04 8.50 179.05 1.52 19.56 16 11 O -0.63 -22.24 15.67 -4.01 -0.06 -22.30 16 12 N -0.73 -16.96 5.08 -457.69 -2.33 -19.29 16 13 C 0.18 5.46 2.42 45.02 0.11 5.56 16 14 C -0.13 -4.25 5.65 30.67 0.17 -4.08 16 15 C 0.15 5.93 6.52 86.37 0.56 6.49 16 16 N -0.62 -29.09 2.77 -699.08 -1.94 -31.03 16 17 C -0.25 -14.09 10.03 84.03 0.84 -13.25 16 18 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 19 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 20 N -0.96 -59.70 13.97 21.65 0.30 -59.39 16 21 Si 0.94 46.28 24.35 68.60 1.67 47.95 16 22 H -0.27 -12.12 6.62 99.48 0.66 -11.46 16 23 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 24 H -0.27 -12.72 6.63 99.48 0.66 -12.06 16 25 C 0.12 4.99 4.20 86.36 0.36 5.35 16 26 C -0.13 -3.90 5.55 30.67 0.17 -3.73 16 27 C -0.16 -2.75 5.72 30.69 0.18 -2.58 16 28 C 0.07 1.00 6.84 72.01 0.49 1.49 16 29 O -0.38 -5.86 9.06 -148.98 -1.35 -7.21 16 30 H 0.05 0.66 7.68 -2.39 -0.02 0.65 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.63 7.68 -2.39 -0.02 0.61 16 36 H 0.06 0.50 6.38 -2.39 -0.02 0.49 16 37 H 0.09 0.86 6.31 -2.39 -0.02 0.85 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.41 4.42 8.62 -92.71 -0.80 3.62 16 40 H 0.41 6.85 8.62 -92.71 -0.80 6.06 16 41 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 46 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 47 H 0.03 1.27 7.08 -2.39 -0.02 1.25 16 48 H 0.06 2.64 4.50 -2.39 -0.01 2.63 16 49 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -72.50 405.53 -0.41 -72.91 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.81 Total: 19.64 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 6.43 Total: 13.55 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -6.29 Total: -124.54 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.41 Total: -29.51 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.67 Total: 47.95 kcal Total: -72.50 -0.41 -72.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611315135.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.275 kcal (2) G-P(sol) polarization free energy of solvation -72.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds