Wall clock time and date at job start Tue Mar 31 2020 23:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 120.00120 * 2 1 4 4 N 1.34776 * 119.99904 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00010 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.52457 * 34.90832 * 5 4 2 7 7 C 1.53042 * 109.50015 * 154.99474 * 5 4 2 8 8 C 1.53039 * 109.53706 * 181.31375 * 7 5 4 9 9 C 1.53195 * 109.31295 * 298.63174 * 8 7 5 10 10 N 1.46923 * 108.88835 * 54.56562 * 9 8 7 11 11 C 1.34776 * 120.62793 * 126.46148 * 10 9 8 12 12 O 1.21285 * 120.00459 * 179.97438 * 11 10 9 13 13 C 1.50705 * 120.00195 * 359.97438 * 11 10 9 14 14 N 1.46897 * 109.47234 * 187.51057 * 13 11 10 15 15 C 1.46897 * 111.00221 * 211.25073 * 14 13 11 16 16 C 1.50703 * 109.47297 * 164.21634 * 15 14 13 17 17 H 1.07997 * 119.99559 * 4.87634 * 16 15 14 18 18 C 1.37871 * 119.99799 * 184.88210 * 16 15 14 19 19 N 1.31516 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00002 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47041 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47070 * 119.99562 * 20 18 16 23 23 H 1.48492 * 109.47502 * 239.99779 * 20 18 16 24 24 C 1.46901 * 110.99768 * 87.29876 * 14 13 11 25 25 C 1.53004 * 109.47419 * 282.13567 * 24 14 13 26 26 C 1.52993 * 109.47230 * 173.97367 * 25 24 14 27 27 C 1.53003 * 109.46861 * 293.97120 * 25 24 14 28 28 C 1.46962 * 118.71879 * 306.63802 * 10 9 8 29 29 H 1.08996 * 109.46847 * 269.99733 * 1 2 3 30 30 H 1.08999 * 109.46802 * 29.99725 * 1 2 3 31 31 H 1.08999 * 109.46810 * 149.99336 * 1 2 3 32 32 H 0.97002 * 120.00494 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.45939 * 61.28811 * 7 5 4 34 34 H 1.09002 * 109.44691 * 301.32545 * 7 5 4 35 35 H 1.08996 * 109.49322 * 178.68335 * 8 7 5 36 36 H 1.08996 * 109.52722 * 58.59959 * 8 7 5 37 37 H 1.09000 * 109.58201 * 174.42399 * 9 8 7 38 38 H 1.08998 * 109.58768 * 294.71114 * 9 8 7 39 39 H 1.09000 * 109.46941 * 307.51149 * 13 11 10 40 40 H 1.08997 * 109.47257 * 67.51026 * 13 11 10 41 41 H 1.09002 * 109.47378 * 284.21712 * 15 14 13 42 42 H 1.08996 * 109.46858 * 44.21546 * 15 14 13 43 43 H 0.97000 * 120.00245 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47046 * 42.13393 * 24 14 13 45 45 H 1.09002 * 109.47514 * 162.13307 * 24 14 13 46 46 H 1.08999 * 109.46565 * 53.96777 * 25 24 14 47 47 H 1.08999 * 109.47828 * 60.00184 * 26 25 24 48 48 H 1.09006 * 109.47276 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47028 * 299.99473 * 26 25 24 50 50 H 1.08998 * 109.47120 * 181.73525 * 27 25 24 51 51 H 1.08994 * 109.47099 * 301.74058 * 27 25 24 52 52 H 1.09001 * 109.47102 * 61.74041 * 27 25 24 53 53 H 1.09001 * 109.46546 * 293.57293 * 28 10 9 54 54 H 1.09003 * 109.71190 * 173.29233 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0100 -0.3252 0.5886 7 6 4.1565 -2.4751 0.6092 8 6 5.6866 -2.4621 0.6402 9 6 6.2215 -2.3543 -0.7913 10 7 5.6212 -1.1784 -1.4360 11 6 6.3981 -0.2389 -2.0106 12 8 5.8905 0.7270 -2.5401 13 6 7.8976 -0.3886 -1.9953 14 7 8.5173 0.8366 -2.5175 15 6 9.7817 0.5364 -3.2025 16 6 10.1891 1.7174 -4.0455 17 1 9.6138 2.6306 -4.0093 18 6 11.2960 1.6317 -4.8628 19 7 11.9968 0.5196 -4.9065 20 14 11.8007 3.0952 -5.9083 21 1 10.8543 4.2166 -5.6797 22 1 13.1732 3.5211 -5.5340 23 1 11.7753 2.7114 -7.3425 24 6 8.7198 1.8217 -1.4467 25 6 7.3907 2.5094 -1.1282 26 6 7.5678 3.4246 0.0850 27 6 6.9449 3.3404 -2.3331 28 6 4.1577 -1.0447 -1.4387 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.6959 -2.0073 -0.0005 33 1 3.8126 -3.3152 0.0059 34 1 3.7736 -2.5763 1.6247 35 1 6.0489 -3.3838 1.0955 36 1 6.0319 -1.6082 1.2229 37 1 7.3057 -2.2451 -0.7688 38 1 5.9560 -3.2522 -1.3492 39 1 8.2353 -0.5594 -0.9731 40 1 8.1847 -1.2351 -2.6190 41 1 10.5563 0.3334 -2.4630 42 1 9.6505 -0.3375 -3.8406 43 1 12.7758 0.4595 -5.4813 44 1 9.0908 1.3173 -0.5544 45 1 9.4460 2.5671 -1.7711 46 1 6.6353 1.7553 -0.9074 47 1 8.3232 4.1787 -0.1358 48 1 6.6207 3.9142 0.3121 49 1 7.8853 2.8326 0.9433 50 1 6.0138 3.8548 -2.0953 51 1 7.7144 4.0741 -2.5731 52 1 6.7889 2.6841 -3.1894 53 1 3.7218 -1.8348 -2.0502 54 1 3.8781 -0.0724 -1.8444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914928.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:57 Heat of formation + Delta-G solvation = -98.449068 kcal Electronic energy + Delta-G solvation = -31770.961397 eV Core-core repulsion = 27741.448729 eV Total energy + Delta-G solvation = -4029.512669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.51118 -40.56849 -38.99622 -37.84360 -35.79177 -35.52915 -34.41256 -33.27126 -31.95295 -30.32139 -29.29963 -28.17478 -27.87800 -26.52028 -25.53707 -24.10964 -22.83335 -21.86551 -21.54914 -20.82530 -19.84460 -18.61143 -18.03785 -17.79495 -17.40784 -17.13614 -16.93088 -16.47327 -16.22612 -15.59303 -15.51150 -15.37206 -15.25551 -14.96983 -14.68467 -14.54836 -14.26935 -14.04899 -13.97038 -13.82389 -13.70271 -13.37543 -13.26948 -13.06785 -13.03314 -12.82556 -12.76536 -12.61236 -12.56109 -12.44687 -12.11284 -12.01243 -11.93861 -11.70570 -11.63333 -11.45399 -11.38194 -11.18871 -10.98219 -10.62189 -10.59326 -10.33938 -9.48736 -8.92242 -8.19036 -6.26362 1.38256 1.39840 1.53330 1.59381 1.76223 1.87385 2.37129 2.42858 3.11978 3.28207 3.59210 3.77560 3.89741 3.91678 3.97679 4.01663 4.10867 4.15190 4.22453 4.30493 4.33114 4.41876 4.51636 4.55155 4.58326 4.61818 4.67549 4.79853 4.82060 4.83803 4.85915 4.88558 4.93527 5.04817 5.06299 5.10448 5.11826 5.14601 5.17723 5.24789 5.31468 5.33261 5.41270 5.56414 5.63682 5.69971 5.76687 6.06835 6.37133 6.40324 6.59000 6.66195 6.88343 7.30428 7.38756 7.42062 8.91416 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.002938 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.965445 B = 9529.106299 C =10285.334740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.497 3.503 3 O -0.603 6.603 4 N -0.709 5.709 5 C 0.137 3.863 6 H 0.052 0.948 7 C -0.114 4.114 8 C -0.127 4.127 9 C 0.095 3.905 10 N -0.615 5.615 11 C 0.510 3.490 12 O -0.543 6.543 13 C 0.041 3.959 14 N -0.532 5.532 15 C 0.214 3.786 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.278 1.278 24 C 0.077 3.923 25 C -0.081 4.081 26 C -0.139 4.139 27 C -0.113 4.113 28 C 0.109 3.891 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.422 0.578 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.098 0.902 41 H -0.028 1.028 42 H 0.010 0.990 43 H 0.264 0.736 44 H 0.032 0.968 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.035 0.965 51 H 0.033 0.967 52 H 0.049 0.951 53 H 0.083 0.917 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.275 -12.827 16.120 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.286 3.714 3 O -0.484 6.484 4 N -0.363 5.363 5 C 0.030 3.970 6 H 0.071 0.929 7 C -0.152 4.152 8 C -0.166 4.166 9 C -0.026 4.026 10 N -0.351 5.351 11 C 0.298 3.702 12 O -0.419 6.419 13 C -0.091 4.091 14 N -0.256 5.256 15 C 0.089 3.911 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.572 5.572 20 Si 0.786 3.214 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.204 1.204 24 C -0.051 4.051 25 C -0.100 4.100 26 C -0.197 4.197 27 C -0.170 4.170 28 C -0.015 4.015 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.261 0.739 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.116 0.884 41 H -0.010 1.010 42 H 0.028 0.972 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.068 0.932 53 H 0.102 0.898 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.286 -11.443 15.393 28.653 hybrid contribution 1.009 0.241 -0.424 1.121 sum -20.277 -11.203 14.969 27.581 Atomic orbital electron populations 1.21893 0.87805 1.06155 1.06299 1.21797 0.92547 0.83033 0.73981 1.90783 1.72277 1.33764 1.51608 1.45937 1.06148 1.09380 1.74785 1.21128 0.80620 1.00201 0.95019 0.92921 1.21770 0.95842 0.94994 1.02552 1.21892 0.95128 1.04095 0.95463 1.22106 0.99057 0.87418 0.94055 1.48157 1.05957 1.23538 1.57425 1.20995 0.89830 0.81777 0.77582 1.90678 1.75504 1.31266 1.44482 1.22073 0.91480 0.94699 1.00831 1.61470 1.26793 1.09570 1.27734 1.19425 0.84046 0.95926 0.91748 1.21440 1.10231 0.99656 1.23998 0.92835 1.25751 0.96408 0.98801 0.98196 1.70050 1.18898 1.27656 1.40571 0.85466 0.78051 0.79471 0.78451 1.19613 1.20016 1.20406 1.22115 0.96928 0.94996 0.91106 1.21060 0.96264 0.97422 0.95214 1.21783 1.01536 0.99371 0.96977 1.21437 0.98233 0.98379 0.98955 1.21794 0.80107 1.01977 0.97610 0.86912 0.89769 0.86843 0.73917 0.88431 0.89247 0.86817 0.92685 0.89356 0.88858 0.90377 0.88443 1.01027 0.97157 0.92695 0.95036 0.92376 0.92389 0.92596 0.92625 0.92054 0.94566 0.94778 0.93202 0.89842 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 10.30 71.24 0.73 -0.75 16 2 C 0.50 9.85 7.91 87.66 0.69 10.54 16 3 O -0.60 -20.30 16.76 -3.04 -0.05 -20.35 16 4 N -0.71 -9.55 5.08 -442.15 -2.25 -11.80 16 5 C 0.14 2.50 2.61 45.07 0.12 2.62 16 6 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 7 C -0.11 -1.05 5.35 30.62 0.16 -0.89 16 8 C -0.13 -1.41 6.08 30.67 0.19 -1.22 16 9 C 0.10 1.53 6.33 86.36 0.55 2.08 16 10 N -0.61 -15.94 2.98 -818.80 -2.44 -18.38 16 11 C 0.51 18.38 6.33 87.66 0.56 18.94 16 12 O -0.54 -24.47 11.57 -3.04 -0.04 -24.51 16 13 C 0.04 1.48 4.04 85.56 0.35 1.83 16 14 N -0.53 -24.48 3.43 -905.36 -3.10 -27.59 16 15 C 0.21 11.54 4.68 85.56 0.40 11.94 16 16 C -0.51 -30.34 8.40 25.60 0.22 -30.13 16 17 H 0.05 3.23 7.56 -2.91 -0.02 3.21 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 20 Si 0.96 46.29 29.54 68.60 2.03 48.31 16 21 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 C 0.08 3.24 4.18 86.30 0.36 3.60 16 25 C -0.08 -3.17 2.39 -10.79 -0.03 -3.20 16 26 C -0.14 -4.45 9.19 71.98 0.66 -3.79 16 27 C -0.11 -4.87 8.45 71.98 0.61 -4.26 16 28 C 0.11 2.67 6.00 86.36 0.52 3.19 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.42 1.86 8.60 -92.71 -0.80 1.07 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.47 5.85 -2.39 -0.01 1.45 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 2.42 6.63 -2.39 -0.02 2.40 16 40 H 0.10 3.42 7.45 -2.39 -0.02 3.40 16 41 H -0.03 -1.56 8.05 -2.39 -0.02 -1.58 16 42 H 0.01 0.59 7.62 -2.39 -0.02 0.57 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 45 H 0.06 2.73 6.95 -2.39 -0.02 2.72 16 46 H 0.06 2.41 5.07 -2.39 -0.01 2.40 16 47 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.05 2.48 6.36 -2.39 -0.02 2.46 16 53 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 54 H 0.05 1.69 7.02 -2.39 -0.02 1.67 16 Total: -1.00 -85.17 416.27 1.06 -84.11 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.08 Total: 14.79 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.54 Total: 11.33 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -7.50 Total: -113.69 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.09 Total: -44.86 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -85.17 1.06 -84.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914928.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.341 kcal (2) G-P(sol) polarization free energy of solvation -85.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds