Wall clock time and date at job start Tue Mar 31 2020 23:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21289 * 119.99546 * 2 1 4 4 N 1.34779 * 120.00472 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00269 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.49496 * 325.06535 * 5 4 2 7 7 C 1.53039 * 109.49840 * 205.00012 * 5 4 2 8 8 C 1.53040 * 109.53742 * 178.65071 * 7 5 4 9 9 C 1.53187 * 109.31180 * 61.36703 * 8 7 5 10 10 N 1.46931 * 108.77515 * 305.36078 * 9 8 7 11 11 C 1.34778 * 120.63121 * 233.59006 * 10 9 8 12 12 O 1.21279 * 119.99938 * 180.02562 * 11 10 9 13 13 C 1.50696 * 119.99955 * 359.97438 * 11 10 9 14 14 N 1.46900 * 109.47080 * 185.93599 * 13 11 10 15 15 C 1.46905 * 111.00080 * 197.04635 * 14 13 11 16 16 C 1.50697 * 109.47005 * 155.84006 * 15 14 13 17 17 H 1.08007 * 120.00154 * 2.25955 * 16 15 14 18 18 C 1.37880 * 120.00172 * 182.25565 * 16 15 14 19 19 N 1.31507 * 120.00226 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99722 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47475 * 270.00336 * 20 18 16 22 22 H 1.48508 * 109.47217 * 30.00054 * 20 18 16 23 23 H 1.48506 * 109.47219 * 149.99849 * 20 18 16 24 24 C 1.46899 * 110.99994 * 73.09214 * 14 13 11 25 25 C 1.53003 * 109.47192 * 201.29116 * 24 14 13 26 26 C 1.52995 * 109.47208 * 61.18134 * 25 24 14 27 27 C 1.52999 * 109.46800 * 181.18206 * 25 24 14 28 28 C 1.46925 * 118.73665 * 53.86179 * 10 9 8 29 29 H 1.09004 * 109.46711 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47212 * 299.99469 * 1 2 3 31 31 H 1.09001 * 109.47202 * 59.99890 * 1 2 3 32 32 H 0.97001 * 119.99449 * 359.97438 * 4 2 1 33 33 H 1.09001 * 109.46084 * 58.62854 * 7 5 4 34 34 H 1.09000 * 109.44850 * 298.66452 * 7 5 4 35 35 H 1.09003 * 109.49875 * 301.41135 * 8 7 5 36 36 H 1.09000 * 109.52187 * 181.33067 * 8 7 5 37 37 H 1.09001 * 109.58628 * 185.58122 * 9 8 7 38 38 H 1.08990 * 109.59154 * 65.14931 * 9 8 7 39 39 H 1.09005 * 109.47373 * 65.93776 * 13 11 10 40 40 H 1.08999 * 109.47482 * 305.93514 * 13 11 10 41 41 H 1.08999 * 109.46793 * 35.84339 * 15 14 13 42 42 H 1.09000 * 109.46865 * 275.84107 * 15 14 13 43 43 H 0.97001 * 120.00299 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47045 * 321.29111 * 24 14 13 45 45 H 1.09007 * 109.47065 * 81.29025 * 24 14 13 46 46 H 1.09002 * 109.46790 * 301.18051 * 25 24 14 47 47 H 1.08990 * 109.47149 * 185.50481 * 26 25 24 48 48 H 1.09004 * 109.46892 * 305.50626 * 26 25 24 49 49 H 1.09003 * 109.46900 * 65.49999 * 26 25 24 50 50 H 1.08998 * 109.47634 * 60.00127 * 27 25 24 51 51 H 1.09006 * 109.46874 * 180.02562 * 27 25 24 52 52 H 1.09002 * 109.47322 * 299.99519 * 27 25 24 53 53 H 1.09009 * 109.58383 * 65.92866 * 28 10 9 54 54 H 1.08998 * 109.58459 * 186.34896 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 0.0000 6 1 4.0099 -0.3243 -0.5877 7 6 4.1571 -2.4741 -0.6103 8 6 5.6871 -2.4608 -0.6410 9 6 6.2216 -2.3543 0.7906 10 7 5.6207 -1.1776 1.4335 11 6 6.3970 -0.2372 2.0075 12 8 5.8888 0.7292 2.5353 13 6 7.8964 -0.3872 1.9945 14 7 8.5025 0.6821 2.7989 15 6 9.9328 0.8233 2.4950 16 6 10.3837 2.2198 2.8376 17 1 9.6873 2.9201 3.2748 18 6 11.6853 2.6036 2.5932 19 7 12.0788 3.8221 2.8926 20 14 12.8899 1.3921 1.8378 21 1 13.5769 0.6388 2.9174 22 1 12.1550 0.4435 0.9629 23 1 13.8954 2.1308 1.0324 24 6 8.2898 0.4469 4.2333 25 6 8.4367 1.7663 4.9938 26 6 7.3806 2.7584 4.5026 27 6 8.2443 1.5161 6.4909 28 6 4.1571 -1.0486 1.4438 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6960 -2.0072 -0.0005 33 1 3.7743 -2.5747 -1.6260 34 1 3.8132 -3.3149 -0.0078 35 1 6.0319 -1.6058 -1.2227 36 1 6.0503 -3.3816 -1.0973 37 1 7.3059 -2.2447 0.7687 38 1 5.9542 -3.2517 1.3483 39 1 8.2594 -0.3205 0.9688 40 1 8.1684 -1.3559 2.4139 41 1 10.0987 0.6381 1.4338 42 1 10.5020 0.1032 3.0829 43 1 12.9944 4.0922 2.7203 44 1 7.2886 0.0460 4.3911 45 1 9.0286 -0.2669 4.5979 46 1 9.4308 2.1777 4.8190 47 1 7.5462 3.7277 4.9726 48 1 7.4550 2.8619 3.4201 49 1 6.3881 2.3920 4.7651 50 1 8.9967 0.8094 6.8409 51 1 8.3485 2.4563 7.0327 52 1 7.2501 1.1048 6.6657 53 1 3.7247 -1.8419 2.0538 54 1 3.8788 -0.0774 1.8530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914930.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:00 Heat of formation + Delta-G solvation = -94.288204 kcal Electronic energy + Delta-G solvation = -31432.981806 eV Core-core repulsion = 27403.649566 eV Total energy + Delta-G solvation = -4029.332240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.49593 -40.56586 -39.07046 -38.03387 -35.73255 -35.26957 -34.50440 -33.30819 -31.96387 -30.59124 -29.54727 -28.30379 -27.85238 -26.47270 -25.27832 -24.10123 -22.69409 -21.82765 -21.57405 -20.78504 -19.91964 -18.77484 -18.26160 -17.81254 -17.25380 -17.04663 -16.72004 -16.44663 -16.14924 -16.10145 -15.43581 -15.38249 -15.24676 -14.94544 -14.63441 -14.49291 -14.46023 -14.16471 -14.02374 -13.94034 -13.71967 -13.31354 -13.24362 -13.09879 -13.05281 -12.94361 -12.77503 -12.60044 -12.51995 -12.19995 -12.01973 -11.96220 -11.81586 -11.73178 -11.64861 -11.50790 -11.45703 -11.01849 -10.91310 -10.67801 -10.62207 -10.37129 -9.52930 -8.90916 -8.15994 -6.16771 1.37641 1.39886 1.49358 1.56825 1.71511 1.84863 2.36884 2.41510 3.12398 3.23207 3.55420 3.73952 3.88352 3.91873 3.97727 4.10034 4.11432 4.19171 4.22284 4.31882 4.36329 4.47549 4.49807 4.54714 4.58898 4.65149 4.65708 4.73444 4.77495 4.81136 4.85700 4.90418 4.91968 4.99669 5.03236 5.03816 5.09092 5.14117 5.14322 5.25174 5.30600 5.38176 5.40981 5.61436 5.63720 5.74179 5.81069 6.08167 6.33884 6.48248 6.57679 6.73789 6.93763 7.28610 7.32238 7.43769 8.99736 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002967 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.659197 B = 9436.081556 C =10306.661697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.497 3.503 3 O -0.607 6.607 4 N -0.708 5.708 5 C 0.133 3.867 6 H 0.048 0.952 7 C -0.113 4.113 8 C -0.130 4.130 9 C 0.096 3.904 10 N -0.614 5.614 11 C 0.508 3.492 12 O -0.556 6.556 13 C 0.040 3.960 14 N -0.534 5.534 15 C 0.173 3.827 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.243 1.243 23 H -0.290 1.290 24 C 0.092 3.908 25 C -0.103 4.103 26 C -0.103 4.103 27 C -0.134 4.134 28 C 0.110 3.890 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.423 0.577 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.031 0.969 42 H -0.002 1.002 43 H 0.262 0.738 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.027 0.973 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.057 0.943 51 H 0.051 0.949 52 H 0.057 0.943 53 H 0.090 0.910 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 -24.779 -7.124 33.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.286 3.714 3 O -0.488 6.488 4 N -0.361 5.361 5 C 0.027 3.973 6 H 0.066 0.934 7 C -0.151 4.151 8 C -0.169 4.169 9 C -0.025 4.025 10 N -0.350 5.350 11 C 0.296 3.704 12 O -0.432 6.432 13 C -0.091 4.091 14 N -0.258 5.258 15 C 0.047 3.953 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.193 4.193 19 N -0.595 5.595 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.166 1.166 23 H -0.216 1.216 24 C -0.036 4.036 25 C -0.122 4.122 26 C -0.160 4.160 27 C -0.192 4.192 28 C -0.015 4.015 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.262 0.738 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.015 0.985 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.046 0.954 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.076 0.924 53 H 0.108 0.892 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.105 -22.995 -6.980 31.983 hybrid contribution 1.086 -0.259 -0.028 1.117 sum -20.019 -23.253 -7.008 31.474 Atomic orbital electron populations 1.21868 0.87680 1.06780 1.05661 1.21837 0.92610 0.83039 0.73940 1.90796 1.72303 1.33906 1.51789 1.45972 1.06184 1.09337 1.74632 1.21256 0.80648 1.00218 0.95188 0.93361 1.21771 0.95957 0.94898 1.02486 1.21917 0.95054 1.04074 0.95827 1.22143 0.99236 0.87285 0.93826 1.48171 1.05955 1.23474 1.57382 1.21066 0.89983 0.81743 0.77583 1.90705 1.75625 1.31570 1.45338 1.22067 0.90870 0.95289 1.00838 1.61366 1.15369 1.43420 1.05657 1.20091 0.83943 0.95486 0.95822 1.21548 0.95898 0.97745 1.39241 0.92441 1.25832 1.00249 0.96852 0.96362 1.70068 1.18214 1.20276 1.50903 0.85797 0.78796 0.79506 0.79323 1.19448 1.16623 1.21592 1.21877 0.98672 0.96066 0.86999 1.21290 1.00507 0.95881 0.94524 1.21326 0.97232 0.96970 1.00519 1.21733 1.01358 1.01349 0.94712 1.21888 0.80145 1.01994 0.97446 0.86658 0.88647 0.88205 0.73830 0.89484 0.88097 0.93025 0.86633 0.88856 0.88327 0.87481 0.89829 0.95063 0.98486 0.92869 0.92346 0.95180 0.91080 0.95363 0.94302 0.94214 0.92345 0.92952 0.92441 0.89188 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.39 71.24 0.74 -0.76 16 2 C 0.50 10.08 7.91 87.66 0.69 10.78 16 3 O -0.61 -21.18 16.76 -3.06 -0.05 -21.23 16 4 N -0.71 -9.53 5.08 -441.47 -2.24 -11.77 16 5 C 0.13 2.44 2.62 45.21 0.12 2.56 16 6 H 0.05 1.34 7.58 -2.39 -0.02 1.33 16 7 C -0.11 -0.97 5.35 30.62 0.16 -0.81 16 8 C -0.13 -1.31 6.08 30.67 0.19 -1.12 16 9 C 0.10 1.29 6.30 86.36 0.54 1.84 16 10 N -0.61 -14.78 2.97 -818.08 -2.43 -17.20 16 11 C 0.51 17.37 7.10 87.66 0.62 17.99 16 12 O -0.56 -24.87 14.78 -3.03 -0.04 -24.92 16 13 C 0.04 1.32 3.81 85.56 0.33 1.64 16 14 N -0.53 -22.98 3.17 -905.35 -2.87 -25.84 16 15 C 0.17 8.17 3.88 85.55 0.33 8.50 16 16 C -0.51 -29.32 8.00 25.60 0.20 -29.11 16 17 H 0.06 3.74 5.40 -2.91 -0.02 3.72 16 18 C 0.00 0.18 5.47 84.66 0.46 0.65 16 19 N -0.95 -60.86 13.96 21.45 0.30 -60.57 16 20 Si 0.94 43.78 27.51 68.60 1.89 45.67 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.24 -10.16 6.48 99.48 0.64 -9.51 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 C 0.09 3.69 3.97 86.30 0.34 4.04 16 25 C -0.10 -4.51 2.43 -10.79 -0.03 -4.54 16 26 C -0.10 -4.79 8.43 71.98 0.61 -4.18 16 27 C -0.13 -4.68 9.19 71.98 0.66 -4.02 16 28 C 0.11 2.56 6.04 86.51 0.52 3.08 16 29 H 0.11 0.12 7.91 -2.38 -0.02 0.10 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.42 1.68 8.44 -92.71 -0.78 0.90 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 1.22 5.95 -2.39 -0.01 1.20 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 3.23 7.42 -2.38 -0.02 3.22 16 40 H 0.08 2.14 7.54 -2.39 -0.02 2.12 16 41 H 0.03 1.43 6.44 -2.39 -0.02 1.41 16 42 H 0.00 -0.11 7.16 -2.39 -0.02 -0.13 16 43 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.06 2.27 6.71 -2.39 -0.02 2.25 16 45 H 0.03 1.14 7.65 -2.38 -0.02 1.12 16 46 H 0.07 3.73 5.10 -2.39 -0.01 3.72 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.04 2.06 7.14 -2.38 -0.02 2.05 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 52 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 53 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 54 H 0.05 1.57 7.00 -2.39 -0.02 1.56 16 Total: -1.00 -89.99 413.47 1.09 -88.90 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.04 Total: 20.44 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.50 Total: 6.53 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -7.24 Total: -115.38 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.10 Total: -46.15 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.89 Total: 45.67 kcal Total: -89.99 1.09 -88.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914930.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.390 kcal (2) G-P(sol) polarization free energy of solvation -89.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds