Wall clock time and date at job start Tue Mar 31 2020 23:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46939 * 2 1 4 4 C 1.53004 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99559 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00211 * 4.84708 * 6 5 4 8 8 C 1.50704 * 120.00030 * 184.57393 * 6 5 4 9 9 N 1.46902 * 109.46667 * 319.91831 * 8 6 5 10 10 C 1.46906 * 110.99963 * 304.15984 * 9 8 6 11 11 C 1.50701 * 109.46768 * 174.89949 * 10 9 8 12 12 O 1.21278 * 120.00308 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99618 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00154 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47256 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00307 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00043 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99888 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47140 * 89.99389 * 19 17 15 21 21 H 1.48498 * 109.47169 * 209.99638 * 19 17 15 22 22 H 1.48506 * 109.47073 * 329.99646 * 19 17 15 23 23 C 1.53000 * 109.47214 * 199.91835 * 8 6 5 24 24 C 1.53002 * 109.46809 * 299.99639 * 23 8 6 25 25 C 1.53001 * 109.47021 * 300.00049 * 24 23 8 26 26 C 1.53003 * 109.47195 * 60.00624 * 25 24 23 27 27 C 1.52998 * 109.47029 * 79.91331 * 8 6 5 28 28 H 1.09003 * 109.47101 * 60.00859 * 1 2 3 29 29 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47390 * 300.00518 * 1 2 3 31 31 H 1.08996 * 109.47390 * 239.99482 * 2 1 3 32 32 H 1.09003 * 109.46626 * 119.98904 * 2 1 3 33 33 H 1.08996 * 109.47503 * 59.99551 * 3 2 1 34 34 H 1.09006 * 109.47024 * 299.99530 * 3 2 1 35 35 H 1.08996 * 109.47190 * 59.99386 * 4 3 2 36 36 H 1.09006 * 109.46723 * 299.99742 * 4 3 2 37 37 H 0.96995 * 120.00047 * 0.02562 * 5 4 3 38 38 H 1.00901 * 110.99365 * 180.21221 * 9 8 6 39 39 H 1.09005 * 109.47162 * 294.89772 * 10 9 8 40 40 H 1.08998 * 109.46546 * 54.89924 * 10 9 8 41 41 H 0.97000 * 119.99829 * 0.02562 * 13 11 10 42 42 H 1.09005 * 109.46784 * 299.99812 * 14 13 11 43 43 H 1.08997 * 109.47244 * 59.99503 * 14 13 11 44 44 H 0.97004 * 120.00259 * 180.02562 * 18 17 15 45 45 H 1.08989 * 109.47309 * 59.99955 * 23 8 6 46 46 H 1.08998 * 109.46702 * 180.02562 * 23 8 6 47 47 H 1.08998 * 109.46742 * 180.02562 * 24 23 8 48 48 H 1.08998 * 109.47260 * 60.00017 * 24 23 8 49 49 H 1.08998 * 109.47516 * 299.99774 * 25 24 23 50 50 H 1.09008 * 109.46952 * 179.97438 * 25 24 23 51 51 H 1.08992 * 109.46904 * 179.97438 * 26 25 24 52 52 H 1.08998 * 109.47059 * 59.99157 * 26 25 24 53 53 H 1.08998 * 109.47453 * 180.02562 * 27 8 6 54 54 H 1.09004 * 109.47402 * 300.00091 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0701 0.0010 7 8 6.1708 2.1519 -0.0864 8 6 5.8864 4.4869 0.1044 9 7 5.0387 5.3680 -0.7099 10 6 4.9820 4.9042 -2.1026 11 6 4.0083 5.7553 -2.8762 12 8 3.4198 6.6595 -2.3221 13 7 3.7913 5.5115 -4.1839 14 6 2.8451 6.3392 -4.9362 15 6 2.7869 5.8633 -6.3648 16 1 3.3936 5.0276 -6.6808 17 6 1.9582 6.4941 -7.2684 18 7 1.9078 6.0791 -8.5153 19 14 0.9082 7.9391 -6.7218 20 1 1.6659 9.2018 -6.9127 21 1 -0.3360 7.9812 -7.5313 22 1 0.5599 7.7830 -5.2866 23 6 7.3282 4.5545 -0.4031 24 6 8.2109 3.6367 0.4450 25 6 8.1626 4.0898 1.9056 26 6 6.7207 4.0221 2.4131 27 6 5.8380 4.9399 1.5650 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9337 0.9286 -0.8890 36 1 3.9329 0.9289 0.8910 37 1 3.4279 3.5610 -0.0003 38 1 5.3579 6.3239 -0.6598 39 1 5.9716 4.9839 -2.5527 40 1 4.6547 3.8648 -2.1262 41 1 4.2617 4.7881 -4.6269 42 1 1.8556 6.2603 -4.4859 43 1 3.1731 7.3784 -4.9129 44 1 1.3250 6.5231 -9.1511 45 1 7.3626 4.2318 -1.4436 46 1 7.6921 5.5792 -0.3279 47 1 9.2381 3.6853 0.0837 48 1 7.8471 2.6120 0.3702 49 1 8.5264 5.1145 1.9804 50 1 8.7911 3.4356 2.5099 51 1 6.6864 4.3444 3.4537 52 1 6.3570 2.9973 2.3382 53 1 6.2014 5.9647 1.6398 54 1 4.8108 4.8917 1.9266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754667667.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:49 Heat of formation + Delta-G solvation = -119.123374 kcal Electronic energy + Delta-G solvation = -31069.892110 eV Core-core repulsion = 27039.482936 eV Total energy + Delta-G solvation = -4030.409174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.06032 -40.42384 -38.61110 -37.06694 -36.30664 -35.85245 -34.50261 -34.39513 -31.85743 -31.18671 -29.96530 -29.62053 -26.84099 -25.31617 -24.04953 -23.60687 -23.12830 -22.24360 -21.69097 -21.32335 -20.45232 -19.26675 -18.17947 -17.57612 -17.27220 -16.99307 -16.85725 -16.61203 -16.33675 -16.04381 -15.78970 -15.47839 -15.36985 -14.86759 -14.79058 -14.57766 -14.47397 -14.41808 -14.10872 -14.01968 -13.89342 -13.39168 -13.29309 -13.19056 -13.09087 -13.03619 -12.92482 -12.67004 -12.49108 -12.12148 -12.02511 -11.95091 -11.92681 -11.70590 -11.66205 -11.52484 -11.39798 -11.18262 -10.92012 -10.81095 -10.30131 -10.01609 -9.92650 -9.54779 -8.39906 -6.47332 1.33547 1.35772 1.48098 1.55773 1.71514 2.16570 2.26810 2.29270 2.95622 3.07372 3.54819 3.72462 3.83659 3.86585 3.88723 4.00000 4.13370 4.15525 4.17654 4.22692 4.32533 4.34435 4.43606 4.53505 4.57395 4.62314 4.65545 4.69738 4.78183 4.86863 4.91439 4.92343 4.94038 5.04166 5.05137 5.08512 5.20854 5.23096 5.25756 5.27309 5.32438 5.34402 5.34896 5.40771 5.45128 5.51006 5.65300 5.80862 6.08264 6.16426 6.53988 6.55666 6.83836 7.15461 7.26541 7.39494 8.74963 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.003173 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.789672 B = 8822.270109 C =11050.069694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.119 3.881 5 N -0.716 5.716 6 C 0.528 3.472 7 O -0.560 6.560 8 C 0.106 3.894 9 N -0.657 5.657 10 C 0.046 3.954 11 C 0.505 3.495 12 O -0.573 6.573 13 N -0.708 5.708 14 C 0.235 3.765 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.025 3.975 18 N -0.933 5.933 19 Si 0.939 3.061 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.097 4.097 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.413 0.587 38 H 0.364 0.636 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.405 0.595 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.272 0.728 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.082 0.918 52 H 0.045 0.955 53 H 0.090 0.910 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 -7.823 24.537 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.004 4.004 5 N -0.368 5.368 6 C 0.315 3.685 7 O -0.439 6.439 8 C 0.012 3.988 9 N -0.291 5.291 10 C -0.087 4.087 11 C 0.292 3.708 12 O -0.453 6.453 13 N -0.359 5.359 14 C 0.111 3.889 15 C -0.586 4.586 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.571 5.571 19 Si 0.763 3.237 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.172 4.172 24 C -0.178 4.178 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.135 4.135 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.250 0.750 38 H 0.185 0.815 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.240 0.760 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.064 0.936 53 H 0.108 0.892 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.646 -8.123 24.865 26.989 hybrid contribution 0.217 0.718 -1.221 1.433 sum 6.863 -7.405 23.644 25.709 Atomic orbital electron populations 1.21770 0.95258 1.02148 1.01900 1.21416 0.96338 0.95311 1.02615 1.21780 0.92931 0.98635 1.03040 1.21401 0.94783 0.82594 1.01664 1.46162 1.07243 1.09540 1.73849 1.20558 0.82318 0.90914 0.74757 1.90543 1.55180 1.47182 1.51023 1.21232 0.91680 0.89295 0.96599 1.60280 1.54511 1.06981 1.07370 1.21794 0.98058 0.99118 0.89717 1.20951 0.83257 0.84748 0.81890 1.90643 1.51418 1.33686 1.69556 1.46039 1.44443 1.35618 1.09772 1.19069 0.88768 0.90843 0.90205 1.21309 1.26251 1.17664 0.93375 0.92569 1.25633 0.97552 0.99758 0.94575 1.69988 1.39840 1.42908 1.04413 0.85827 0.78838 0.79725 0.79321 1.18977 1.19975 1.18154 1.22081 0.93999 1.01363 0.99708 1.21945 0.98831 1.01978 0.95037 1.21501 0.96332 1.01717 0.95588 1.21526 0.95277 0.98898 0.99773 1.21509 1.01410 1.00795 0.89830 0.93311 0.91963 0.92239 0.92018 0.90927 0.90431 0.91991 0.92685 0.91511 0.75030 0.81500 0.90144 0.88081 0.75959 0.96798 0.96899 0.91869 0.92651 0.89972 0.92406 0.89414 0.91176 0.91774 0.89892 0.93586 0.89152 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.68 5.93 30.59 0.18 -1.50 16 3 C -0.13 -1.98 5.33 30.59 0.16 -1.82 16 4 C 0.12 2.22 5.68 86.38 0.49 2.71 16 5 N -0.72 -14.51 4.78 -463.05 -2.21 -16.72 16 6 C 0.53 11.95 4.01 87.66 0.35 12.30 16 7 O -0.56 -15.55 12.92 -3.03 -0.04 -15.59 16 8 C 0.11 2.01 0.63 2.78 0.00 2.01 16 9 N -0.66 -14.07 4.99 -477.85 -2.39 -16.45 16 10 C 0.05 1.13 5.41 85.56 0.46 1.59 16 11 C 0.51 17.52 7.88 87.66 0.69 18.21 16 12 O -0.57 -23.68 16.31 -3.02 -0.05 -23.73 16 13 N -0.71 -27.39 5.55 -466.79 -2.59 -29.98 16 14 C 0.23 11.24 4.50 85.63 0.38 11.63 16 15 C -0.55 -30.01 9.83 25.60 0.25 -29.75 16 16 H 0.06 3.26 7.84 -2.91 -0.02 3.23 16 17 C 0.03 1.40 5.47 84.66 0.46 1.87 16 18 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 19 Si 0.94 43.48 27.47 68.60 1.88 45.36 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 23 C -0.13 -2.49 4.39 30.59 0.13 -2.36 16 24 C -0.14 -2.70 5.63 30.60 0.17 -2.53 16 25 C -0.11 -1.74 5.92 30.60 0.18 -1.56 16 26 C -0.12 -1.78 5.70 30.60 0.17 -1.60 16 27 C -0.10 -1.50 5.02 30.59 0.15 -1.35 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.41 8.24 7.93 -92.71 -0.74 7.50 16 38 H 0.36 7.62 8.62 -89.69 -0.77 6.85 16 39 H 0.08 1.78 6.67 -2.38 -0.02 1.77 16 40 H 0.10 2.50 6.30 -2.39 -0.02 2.49 16 41 H 0.41 14.09 8.32 -92.71 -0.77 13.32 16 42 H 0.01 0.71 7.20 -2.38 -0.02 0.69 16 43 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.05 1.17 6.61 -2.39 -0.02 1.15 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 2.17 4.93 -3.21 -0.02 2.15 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.05 0.88 7.01 -2.39 -0.02 0.86 16 53 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -67.18 415.57 -1.55 -68.73 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -1.43 Total: 37.20 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.97 Total: 6.44 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -6.89 Total: -118.43 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.09 Total: -39.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -67.18 -1.55 -68.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754667667.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.390 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds