Wall clock time and date at job start Tue Mar 31 2020 23:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99909 * 2 1 4 4 N 1.34775 * 119.99948 * 179.71895 * 2 1 3 5 5 C 1.46927 * 120.63106 * 359.97438 * 4 2 1 6 6 C 1.53623 * 108.54550 * 126.37060 * 5 4 2 7 7 C 1.53037 * 109.24290 * 54.85271 * 6 5 4 8 8 N 1.46499 * 109.46058 * 178.49403 * 7 6 5 9 9 C 1.34785 * 119.99752 * 275.06885 * 8 7 6 10 10 O 1.21273 * 120.00041 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99689 * 180.02562 * 9 8 7 12 12 N 1.46903 * 109.47090 * 187.58739 * 11 9 8 13 13 C 1.46890 * 110.99974 * 211.25455 * 12 11 9 14 14 C 1.50700 * 109.47353 * 164.21787 * 13 12 11 15 15 H 1.08003 * 119.99929 * 4.86922 * 14 13 12 16 16 C 1.37877 * 120.00442 * 184.88161 * 14 13 12 17 17 N 1.31517 * 120.00018 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47164 * 89.99562 * 18 16 14 20 20 H 1.48505 * 109.46938 * 209.99558 * 18 16 14 21 21 H 1.48501 * 109.47027 * 329.99382 * 18 16 14 22 22 C 1.46904 * 110.99788 * 87.29956 * 12 11 9 23 23 C 1.52999 * 109.46944 * 282.12302 * 22 12 11 24 24 C 1.53001 * 109.47289 * 173.93327 * 23 22 12 25 25 C 1.53002 * 109.47509 * 293.93361 * 23 22 12 26 26 C 1.53037 * 109.53947 * 298.51697 * 7 6 5 27 27 C 1.46929 * 120.63183 * 180.28093 * 4 2 1 28 28 H 1.09001 * 109.46876 * 90.00634 * 1 2 3 29 29 H 1.09000 * 109.47297 * 210.00442 * 1 2 3 30 30 H 1.09003 * 109.46959 * 330.00460 * 1 2 3 31 31 H 1.09001 * 109.58709 * 246.20486 * 5 4 2 32 32 H 1.08997 * 109.58537 * 6.62575 * 5 4 2 33 33 H 1.09002 * 109.63008 * 294.86614 * 6 5 4 34 34 H 1.08993 * 109.43295 * 174.72638 * 6 5 4 35 35 H 1.09005 * 109.44432 * 58.52791 * 7 6 5 36 36 H 0.97001 * 119.99952 * 95.07293 * 8 7 6 37 37 H 1.08997 * 109.47198 * 307.58701 * 11 9 8 38 38 H 1.09006 * 109.47342 * 67.58473 * 11 9 8 39 39 H 1.09004 * 109.47468 * 284.21275 * 13 12 11 40 40 H 1.09000 * 109.47691 * 44.21383 * 13 12 11 41 41 H 0.96995 * 120.00344 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47420 * 42.12445 * 22 12 11 43 43 H 1.09002 * 109.46745 * 162.12880 * 22 12 11 44 44 H 1.09002 * 109.46918 * 53.93317 * 23 22 12 45 45 H 1.09005 * 109.46736 * 59.99503 * 24 23 22 46 46 H 1.08988 * 109.47535 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47147 * 300.00508 * 24 23 22 48 48 H 1.09002 * 109.46786 * 301.73745 * 25 23 22 49 49 H 1.09002 * 109.46705 * 61.73424 * 25 23 22 50 50 H 1.08996 * 109.47555 * 181.73787 * 25 23 22 51 51 H 1.09004 * 109.49698 * 301.40526 * 26 7 6 52 52 H 1.09006 * 109.52411 * 181.33085 * 26 7 6 53 53 H 1.09006 * 109.58357 * 353.36900 * 27 4 2 54 54 H 1.08992 * 109.59011 * 113.65324 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0126 6 6 1.9729 -3.3030 -1.1560 7 6 3.4938 -3.4376 -1.0533 8 7 3.9839 -4.2824 -2.1453 9 6 3.9842 -5.6236 -2.0115 10 8 3.5784 -6.1310 -0.9875 11 6 4.4888 -6.4926 -3.1346 12 7 4.2191 -7.9024 -2.8219 13 6 5.2473 -8.7763 -3.4023 14 6 5.1721 -10.1368 -2.7585 15 1 4.3853 -10.3572 -2.0521 16 6 6.1077 -11.1001 -3.0709 17 7 7.0656 -10.8319 -3.9313 18 14 6.0148 -12.7862 -2.2723 19 1 5.1765 -13.6838 -3.1071 20 1 7.3820 -13.3539 -2.1542 21 1 5.4122 -12.6612 -0.9208 22 6 2.8778 -8.2948 -3.2747 23 6 1.8329 -7.7716 -2.2871 24 6 0.4309 -8.0476 -2.8341 25 6 2.0036 -8.4791 -0.9413 26 6 4.1380 -2.0529 -1.1515 27 6 3.6500 -1.1834 0.0120 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6425 -2.9644 0.9548 32 1 0.3921 -2.2663 -0.1064 33 1 1.7129 -2.8257 -2.1008 34 1 1.5162 -4.2915 -1.1094 35 1 3.7542 -3.8923 -0.0975 36 1 4.3081 -3.8766 -2.9645 37 1 3.9804 -6.2220 -4.0600 38 1 5.5623 -6.3457 -3.2535 39 1 5.0793 -8.8723 -4.4750 40 1 6.2326 -8.3449 -3.2261 41 1 7.7236 -11.5096 -4.1514 42 1 2.6891 -7.8717 -4.2613 43 1 2.8157 -9.3817 -3.3274 44 1 1.9656 -6.6981 -2.1526 45 1 0.2983 -9.1211 -2.9688 46 1 -0.3135 -7.6745 -2.1309 47 1 0.3092 -7.5435 -3.7929 48 1 1.9015 -9.5553 -1.0812 49 1 2.9913 -8.2574 -0.5370 50 1 1.2397 -8.1289 -0.2472 51 1 3.8577 -1.5874 -2.0965 52 1 5.2225 -2.1513 -1.1021 53 1 4.0271 -0.1676 -0.1075 54 1 4.0069 -1.5970 0.9551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755670602.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:04 Heat of formation + Delta-G solvation = -95.382925 kcal Electronic energy + Delta-G solvation = -31155.653354 eV Core-core repulsion = 27126.273643 eV Total energy + Delta-G solvation = -4029.379711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.40055 -40.66035 -38.85515 -37.88221 -35.64931 -35.45781 -34.38359 -32.94854 -32.08661 -30.31807 -29.69063 -28.11584 -27.77043 -26.20010 -25.25708 -24.32163 -22.79978 -21.95696 -21.28257 -20.63621 -20.03294 -18.61779 -18.25445 -17.61042 -17.21893 -16.96415 -16.82982 -16.53074 -16.38617 -15.63131 -15.44056 -15.25406 -15.03311 -14.97195 -14.78746 -14.32281 -14.23225 -14.12139 -14.06380 -13.77260 -13.60314 -13.32244 -13.03544 -12.98454 -12.93853 -12.82447 -12.75046 -12.69933 -12.56694 -12.37715 -12.23801 -12.06156 -12.02018 -11.62675 -11.60612 -11.42127 -11.30281 -11.10168 -10.87723 -10.58541 -10.55128 -9.89110 -9.72814 -8.89245 -8.17707 -6.25260 1.40222 1.41536 1.53188 1.59284 1.86838 2.01708 2.20723 2.43132 3.13969 3.38788 3.56960 3.77328 3.85083 4.00221 4.04972 4.10211 4.16783 4.24539 4.29192 4.39031 4.39395 4.44117 4.48204 4.53350 4.55551 4.62504 4.70013 4.78674 4.80173 4.86138 4.91775 4.94099 4.95211 4.98083 5.07725 5.15209 5.16161 5.19571 5.24812 5.27258 5.31270 5.41542 5.51891 5.60709 5.68004 5.71968 5.89363 6.09244 6.39130 6.42744 6.55031 6.81220 6.89973 7.13908 7.43101 7.52782 8.92469 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002411 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.125392 B =11611.384450 C =12329.462589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.601 6.601 4 N -0.611 5.611 5 C 0.109 3.891 6 C -0.137 4.137 7 C 0.149 3.851 8 N -0.722 5.722 9 C 0.518 3.482 10 O -0.534 6.534 11 C 0.030 3.970 12 N -0.526 5.526 13 C 0.212 3.788 14 C -0.513 4.513 15 H 0.056 0.944 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.071 3.929 23 C -0.078 4.078 24 C -0.141 4.141 25 C -0.115 4.115 26 C -0.128 4.128 27 C 0.112 3.888 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.092 0.908 39 H -0.032 1.032 40 H 0.008 0.992 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.025 0.975 49 H 0.049 0.951 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.089 0.911 53 H 0.083 0.917 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 19.856 4.065 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.483 6.483 4 N -0.344 5.344 5 C -0.013 4.013 6 C -0.176 4.176 7 C 0.045 3.955 8 N -0.376 5.376 9 C 0.304 3.696 10 O -0.410 6.410 11 C -0.102 4.102 12 N -0.250 5.250 13 C 0.086 3.914 14 C -0.551 4.551 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.574 5.574 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.057 4.057 23 C -0.097 4.097 24 C -0.198 4.198 25 C -0.172 4.172 26 C -0.167 4.167 27 C -0.011 4.011 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.110 0.890 39 H -0.015 1.015 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.096 0.904 52 H 0.107 0.893 53 H 0.101 0.899 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.511 19.863 5.240 25.150 hybrid contribution 0.908 -0.916 -1.106 1.699 sum -13.602 18.947 4.133 23.688 Atomic orbital electron populations 1.22011 0.88632 1.06128 1.06235 1.21561 0.92267 0.82369 0.74133 1.90689 1.72015 1.32813 1.52781 1.48338 1.07008 1.06638 1.72408 1.22046 0.98277 0.82237 0.98784 1.22310 0.95282 1.00542 0.99509 1.20859 0.93803 0.90014 0.90865 1.45961 1.66413 1.05125 1.20101 1.20682 0.77500 0.82627 0.88826 1.90667 1.46034 1.73847 1.30415 1.22107 1.02177 0.89966 0.95905 1.61519 1.02763 1.00466 1.60228 1.19424 0.89249 0.91588 0.91113 1.21418 1.11942 0.97249 1.24506 0.92548 1.25789 0.94994 1.02718 0.95924 1.70053 1.16264 1.35708 1.35345 0.85511 0.77384 0.79528 0.78993 1.19768 1.20726 1.19526 1.22186 0.88347 0.99932 0.95228 1.21070 0.93495 1.00399 0.94704 1.21809 0.95722 1.01364 1.00952 1.21467 1.01366 0.97701 0.96689 1.22088 1.01550 0.93456 0.99571 1.21535 0.79850 1.01119 0.98641 0.87186 0.87445 0.88868 0.90494 0.86294 0.90529 0.91001 0.91256 0.75456 0.90500 0.88956 1.01470 0.97374 0.92791 0.95350 0.92929 0.91026 0.93449 0.91545 0.92279 0.95580 0.93155 0.93486 0.90368 0.89293 0.89864 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.47 71.24 0.67 -0.73 16 2 C 0.51 8.76 7.81 87.66 0.68 9.44 16 3 O -0.60 -16.17 16.51 -3.04 -0.05 -16.22 16 4 N -0.61 -8.84 2.97 -817.99 -2.43 -11.26 16 5 C 0.11 1.15 6.25 86.51 0.54 1.69 16 6 C -0.14 -1.90 5.67 30.82 0.17 -1.73 16 7 C 0.15 2.52 2.41 45.02 0.11 2.63 16 8 N -0.72 -13.91 5.08 -442.41 -2.25 -16.15 16 9 C 0.52 14.90 6.42 87.65 0.56 15.46 16 10 O -0.53 -19.01 11.82 -3.01 -0.04 -19.05 16 11 C 0.03 0.97 5.56 85.56 0.48 1.45 16 12 N -0.53 -22.18 3.43 -905.38 -3.10 -25.28 16 13 C 0.21 11.02 4.68 85.56 0.40 11.42 16 14 C -0.51 -29.17 8.40 25.60 0.22 -28.96 16 15 H 0.06 3.25 7.56 -2.91 -0.02 3.22 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 18 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.07 2.70 4.18 86.30 0.36 3.06 16 23 C -0.08 -2.49 2.39 -10.79 -0.03 -2.52 16 24 C -0.14 -3.55 9.19 71.98 0.66 -2.89 16 25 C -0.11 -4.12 8.45 71.98 0.61 -3.52 16 26 C -0.13 -1.71 5.55 30.68 0.17 -1.54 16 27 C 0.11 1.71 6.43 86.38 0.56 2.26 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.36 6.18 -2.39 -0.01 0.35 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 0.62 5.51 -2.39 -0.01 0.61 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.51 7.58 -2.38 -0.02 1.49 16 36 H 0.41 5.76 8.60 -92.71 -0.80 4.97 16 37 H 0.08 2.09 7.48 -2.39 -0.02 2.07 16 38 H 0.09 2.99 7.45 -2.38 -0.02 2.97 16 39 H -0.03 -1.77 8.05 -2.39 -0.02 -1.79 16 40 H 0.01 0.46 7.62 -2.39 -0.02 0.44 16 41 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.03 0.99 7.57 -2.39 -0.02 0.97 16 43 H 0.05 2.30 6.95 -2.39 -0.02 2.28 16 44 H 0.07 2.26 5.07 -2.39 -0.01 2.24 16 45 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.05 2.15 6.37 -2.39 -0.02 2.14 16 50 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 53 H 0.08 1.53 7.01 -2.38 -0.02 1.51 16 54 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.41 415.42 1.16 -74.25 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.08 Total: 15.82 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.63 Total: 6.19 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -7.49 Total: -108.03 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.09 Total: -35.27 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.41 1.16 -74.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670602.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.131 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds