Wall clock time and date at job start Tue Mar 31 2020 23:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.53000 * 109.47075 * 119.99916 * 2 1 3 5 5 N 1.46898 * 109.46986 * 60.94622 * 4 2 1 6 6 C 1.46894 * 111.00463 * 73.56662 * 5 4 2 7 7 C 1.50698 * 109.47302 * 279.58162 * 6 5 4 8 8 H 1.08005 * 120.00134 * 2.98812 * 7 6 5 9 9 C 1.37875 * 120.00383 * 182.99091 * 7 6 5 10 10 N 1.31517 * 119.99879 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00328 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47045 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46977 * 120.00184 * 11 9 7 14 14 H 1.48500 * 109.47228 * 240.00354 * 11 9 7 15 15 C 1.46896 * 110.99950 * 197.52386 * 5 4 2 16 16 C 1.50696 * 109.47385 * 66.04340 * 15 5 4 17 17 O 1.21231 * 120.00253 * 359.97438 * 16 15 5 18 18 N 1.34783 * 120.00095 * 180.02562 * 16 15 5 19 19 C 1.34777 * 119.99986 * 179.97438 * 18 16 15 20 20 O 1.21542 * 120.00123 * 359.97438 * 19 18 16 21 21 N 1.34773 * 120.00403 * 179.97438 * 19 18 16 22 22 C 1.46500 * 120.00375 * 179.97438 * 21 19 18 23 23 C 1.52992 * 109.47435 * 275.00091 * 22 21 19 24 24 C 1.52991 * 109.47582 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47024 * 59.99851 * 24 23 22 26 26 C 1.53005 * 109.47202 * 300.00319 * 25 24 23 27 27 C 1.52996 * 109.46801 * 154.99906 * 22 21 19 28 28 H 1.08999 * 109.47107 * 59.99482 * 1 2 3 29 29 H 1.08997 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46998 * 300.00087 * 1 2 3 31 31 H 1.08999 * 109.47061 * 240.00462 * 2 1 3 32 32 H 1.08989 * 109.47295 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46809 * 300.00493 * 3 2 1 34 34 H 1.08998 * 109.47028 * 59.99539 * 3 2 1 35 35 H 1.08999 * 109.47327 * 300.94575 * 4 2 1 36 36 H 1.09003 * 109.47046 * 180.94297 * 4 2 1 37 37 H 1.09001 * 109.46986 * 39.57614 * 6 5 4 38 38 H 1.08996 * 109.47285 * 159.58006 * 6 5 4 39 39 H 0.97000 * 120.00149 * 179.97438 * 10 9 7 40 40 H 1.09008 * 109.46958 * 306.04198 * 15 5 4 41 41 H 1.09003 * 109.47356 * 186.04450 * 15 5 4 42 42 H 0.96998 * 120.00239 * 359.97438 * 18 16 15 43 43 H 0.97001 * 119.99255 * 359.97438 * 21 19 18 44 44 H 1.09003 * 109.46838 * 35.00329 * 22 21 19 45 45 H 1.09004 * 109.47076 * 300.00454 * 23 22 21 46 46 H 1.08999 * 109.47259 * 59.99726 * 23 22 21 47 47 H 1.09004 * 109.47307 * 300.00339 * 24 23 22 48 48 H 1.08996 * 109.47515 * 180.02562 * 24 23 22 49 49 H 1.09007 * 109.47407 * 180.02562 * 25 24 23 50 50 H 1.09003 * 109.46976 * 60.00561 * 25 24 23 51 51 H 1.08994 * 109.47161 * 300.00054 * 26 25 24 52 52 H 1.09000 * 109.47020 * 179.97438 * 26 25 24 53 53 H 1.09003 * 109.47732 * 300.00436 * 27 22 21 54 54 H 1.09007 * 109.47494 * 60.00292 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5691 -2.1126 1.2379 6 6 2.3033 -2.9089 0.2455 7 6 1.7269 -2.6596 -1.1245 8 1 0.9302 -1.9418 -1.2527 9 6 2.2166 -3.3479 -2.2141 10 7 3.1864 -4.2224 -2.0579 11 14 1.5017 -3.0395 -3.9121 12 1 0.4290 -2.0166 -3.8193 13 1 2.5722 -2.5526 -4.8189 14 1 0.9359 -4.3035 -4.4481 15 6 1.6706 -2.7137 2.5744 16 6 0.7158 -2.0197 3.5112 17 8 0.0198 -1.1136 3.1057 18 7 0.6362 -2.4056 4.8001 19 6 -0.2174 -1.7845 5.6380 20 8 -0.9151 -0.8761 5.2315 21 7 -0.2975 -2.1707 6.9267 22 6 -1.2249 -1.4953 7.8377 23 6 -0.5580 -0.2419 8.4076 24 6 -1.5267 0.4639 9.3584 25 6 -1.8977 -0.4815 10.5027 26 6 -2.5648 -1.7350 9.9328 27 6 -1.5953 -2.4410 8.9819 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6629 -0.2173 2.1392 36 1 3.1299 -0.7066 1.2577 37 1 3.3547 -2.6216 0.2550 38 1 2.2135 -3.9672 0.4903 39 1 3.5307 -4.7070 -2.8245 40 1 2.6893 -2.6030 2.9462 41 1 1.4179 -3.7725 2.5168 42 1 1.1932 -3.1303 5.1247 43 1 0.2591 -2.8960 7.2511 44 1 -2.1263 -1.2121 7.2942 45 1 0.3435 -0.5251 8.9510 46 1 -0.2941 0.4319 7.5924 47 1 -2.4280 0.7472 8.8146 48 1 -1.0518 1.3571 9.7640 49 1 -2.5883 0.0212 11.1800 50 1 -0.9965 -0.7647 11.0466 51 1 -3.4658 -1.4517 9.3890 52 1 -2.8286 -2.4087 10.7481 53 1 -2.0704 -3.3341 8.5760 54 1 -0.6939 -2.7243 9.5255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755670721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:11 Heat of formation + Delta-G solvation = -101.413812 kcal Electronic energy + Delta-G solvation = -30689.344973 eV Core-core repulsion = 26659.703743 eV Total energy + Delta-G solvation = -4029.641229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.23249 -40.34658 -39.13948 -38.16031 -35.74563 -35.23364 -34.98073 -34.48560 -31.68506 -30.57244 -29.83519 -28.32701 -27.82429 -26.02996 -24.39194 -23.57731 -22.92481 -22.01901 -21.53689 -20.95175 -20.65851 -19.62948 -18.60264 -18.01535 -17.18177 -17.03796 -16.56943 -16.41151 -16.25622 -15.75948 -15.74608 -15.32782 -15.15756 -14.90834 -14.85753 -14.59736 -14.34210 -14.10393 -13.92222 -13.80796 -13.46921 -13.17298 -13.13497 -13.09845 -12.85611 -12.72977 -12.58213 -12.37060 -12.27566 -12.08737 -12.01005 -11.87134 -11.66702 -11.51007 -11.46573 -11.38145 -11.34856 -11.22746 -11.10987 -10.90163 -10.52922 -10.43545 -10.08560 -8.95513 -8.11348 -6.14258 1.10381 1.31189 1.41424 1.44423 1.56561 2.26867 2.45342 2.87661 3.19954 3.34985 3.70827 3.77991 3.82124 4.02564 4.15512 4.22126 4.24461 4.31045 4.38593 4.40003 4.43553 4.53105 4.54935 4.57237 4.70774 4.73569 4.80052 4.88708 4.91276 4.97676 5.07724 5.12144 5.13767 5.16436 5.18984 5.20831 5.22886 5.23075 5.32015 5.33379 5.38492 5.42310 5.45371 5.53056 5.61902 5.68489 5.79023 5.89699 6.16625 6.42013 6.56894 6.71401 6.99727 7.19601 7.39769 7.51387 8.98813 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002202 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.269959 B =12713.039971 C =13341.874351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.081 3.919 5 N -0.533 5.533 6 C 0.210 3.790 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.950 3.050 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.040 3.960 16 C 0.517 3.483 17 O -0.490 6.490 18 N -0.675 5.675 19 C 0.691 3.309 20 O -0.588 6.588 21 N -0.715 5.715 22 C 0.159 3.841 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.017 0.983 37 H -0.026 1.026 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.431 0.569 43 H 0.417 0.583 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.085 0.915 53 H 0.074 0.926 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 1.969 27.716 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C -0.194 4.194 4 C -0.047 4.047 5 N -0.258 5.258 6 C 0.085 3.915 7 C -0.543 4.543 8 H 0.094 0.906 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.776 3.224 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.091 4.091 16 C 0.304 3.696 17 O -0.359 6.359 18 N -0.344 5.344 19 C 0.391 3.609 20 O -0.464 6.464 21 N -0.372 5.372 22 C 0.054 3.946 23 C -0.165 4.165 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.154 4.154 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.035 0.965 37 H -0.008 1.008 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.271 0.729 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.074 0.926 52 H 0.103 0.897 53 H 0.093 0.907 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.790 3.226 26.846 27.653 hybrid contribution 1.194 -0.694 -0.801 1.596 sum -4.597 2.533 26.045 26.569 Atomic orbital electron populations 1.21417 0.95533 1.00828 0.98960 1.21315 0.96134 0.95567 0.99199 1.21749 1.00600 0.95522 1.01510 1.21999 0.95212 0.88893 0.98555 1.61689 1.58044 1.02419 1.03601 1.19502 0.90078 0.91851 0.90107 1.21755 1.18624 1.21853 0.92064 0.90596 1.25705 0.95742 0.95317 1.02571 1.70055 1.28484 1.27429 1.31508 0.85610 0.78430 0.77992 0.80327 1.19234 1.20780 1.20812 1.22068 0.97331 1.00326 0.89414 1.21281 0.83582 0.83204 0.81563 1.90795 1.41376 1.28337 1.75365 1.43964 1.41582 1.38521 1.10305 1.16421 0.80474 0.81929 0.82084 1.91040 1.46183 1.32225 1.76915 1.45202 1.45337 1.39971 1.06707 1.20969 0.91170 0.92889 0.89535 1.21891 0.99695 0.96426 0.98502 1.21503 0.98697 0.98769 0.96623 1.21562 1.01311 0.95588 0.96976 1.21522 0.97817 0.97257 0.98883 1.21788 1.01269 0.97506 0.94874 0.94095 0.93703 0.94485 0.90319 0.92755 0.92186 0.93079 0.91894 0.96530 1.00793 0.96578 0.93066 0.89749 0.86037 0.72945 0.74481 0.92468 0.90124 0.94778 0.93092 0.91262 0.91081 0.90691 0.92624 0.89654 0.90705 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 8.40 71.98 0.60 -4.06 16 2 C -0.10 -4.29 2.40 -10.79 -0.03 -4.32 16 3 C -0.14 -4.63 9.19 71.98 0.66 -3.97 16 4 C 0.08 3.33 3.94 86.30 0.34 3.67 16 5 N -0.53 -22.62 3.44 -905.39 -3.12 -25.74 16 6 C 0.21 10.48 4.79 85.56 0.41 10.89 16 7 C -0.50 -27.57 7.25 25.60 0.19 -27.38 16 8 H 0.08 4.17 4.59 -2.91 -0.01 4.16 16 9 C 0.00 0.23 5.46 84.65 0.46 0.69 16 10 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 11 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 C 0.04 1.27 5.41 85.56 0.46 1.73 16 16 C 0.52 16.85 7.31 87.65 0.64 17.49 16 17 O -0.49 -21.29 12.90 19.88 0.26 -21.03 16 18 N -0.68 -15.25 5.24 -440.52 -2.31 -17.56 16 19 C 0.69 18.46 8.47 179.06 1.52 19.98 16 20 O -0.59 -23.18 14.41 18.91 0.27 -22.91 16 21 N -0.71 -11.48 5.08 -457.88 -2.33 -13.81 16 22 C 0.16 2.60 2.45 44.99 0.11 2.71 16 23 C -0.13 -2.08 5.49 30.59 0.17 -1.91 16 24 C -0.12 -1.60 5.92 30.59 0.18 -1.41 16 25 C -0.12 -1.03 5.92 30.60 0.18 -0.85 16 26 C -0.12 -1.00 5.93 30.61 0.18 -0.82 16 27 C -0.12 -1.04 5.39 30.61 0.17 -0.87 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 2.12 6.74 -2.39 -0.02 2.11 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 3.74 5.14 -2.39 -0.01 3.73 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 2.58 5.82 -2.39 -0.01 2.57 16 36 H 0.02 0.67 7.73 -2.39 -0.02 0.65 16 37 H -0.03 -1.37 7.67 -2.39 -0.02 -1.39 16 38 H 0.02 0.84 7.65 -2.39 -0.02 0.82 16 39 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.08 2.22 8.12 -2.38 -0.02 2.20 16 41 H 0.12 3.41 7.80 -2.39 -0.02 3.39 16 42 H 0.43 4.91 8.71 -92.71 -0.81 4.10 16 43 H 0.42 3.09 8.62 -92.71 -0.80 2.29 16 44 H 0.06 1.34 7.58 -2.39 -0.02 1.32 16 45 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 49 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 53 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 Total: -1.00 -79.29 415.56 0.62 -78.67 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.71 Total: 18.25 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.25 Total: 11.57 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -7.47 Total: -111.20 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: 0.53 Total: -43.94 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.29 0.62 -78.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.740 kcal (2) G-P(sol) polarization free energy of solvation -79.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds