Wall clock time and date at job start Tue Mar 31 2020 23:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 C 1.53004 * 109.46918 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46974 * 179.97438 * 4 3 2 6 6 C 1.47012 * 111.00032 * 297.68718 * 5 4 3 7 7 C 1.53099 * 109.25393 * 177.61010 * 6 5 4 8 8 O 1.43010 * 109.26421 * 56.84772 * 7 6 5 9 9 C 1.43019 * 113.73446 * 301.32941 * 8 7 6 10 10 C 1.47017 * 110.99779 * 174.04801 * 5 4 3 11 11 H 1.09004 * 109.50126 * 62.46030 * 10 5 4 12 12 C 1.50700 * 109.54276 * 302.35501 * 10 5 4 13 13 O 1.21277 * 120.00025 * 334.64269 * 12 10 5 14 14 N 1.34775 * 120.00157 * 154.65307 * 12 10 5 15 15 C 1.46497 * 120.00279 * 185.46719 * 14 12 10 16 16 C 1.52996 * 109.47259 * 84.03395 * 15 14 12 17 17 C 1.46508 * 119.99803 * 5.46262 * 14 12 10 18 18 C 1.53942 * 113.73901 * 218.74472 * 17 14 12 19 19 N 1.47807 * 86.03525 * 222.08112 * 18 17 14 20 20 C 1.36935 * 134.45963 * 204.64047 * 19 18 17 21 21 H 1.08007 * 120.00184 * 179.87133 * 20 19 18 22 22 C 1.38816 * 120.00099 * 359.87312 * 20 19 18 23 23 N 1.31621 * 119.99528 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00152 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47122 * 60.00358 * 24 22 20 26 26 H 1.48507 * 109.46972 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47492 * 299.99915 * 24 22 20 28 28 C 1.47575 * 91.05093 * 24.55302 * 19 18 17 29 29 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47043 * 300.00253 * 1 2 3 31 31 H 1.09010 * 109.47119 * 59.99898 * 1 2 3 32 32 H 1.09005 * 109.47360 * 240.00177 * 2 1 3 33 33 H 1.08997 * 109.47285 * 119.99790 * 2 1 3 34 34 H 1.08995 * 109.46696 * 60.00364 * 3 2 1 35 35 H 1.09001 * 109.47283 * 299.99750 * 3 2 1 36 36 H 1.09003 * 109.46977 * 59.99892 * 4 3 2 37 37 H 1.08998 * 109.47233 * 300.00555 * 4 3 2 38 38 H 1.09000 * 109.50633 * 57.67235 * 6 5 4 39 39 H 1.08998 * 109.53832 * 297.55990 * 6 5 4 40 40 H 1.09007 * 109.50301 * 296.90706 * 7 6 5 41 41 H 1.09003 * 109.54289 * 176.80972 * 7 6 5 42 42 H 1.08998 * 109.51092 * 298.73500 * 9 8 7 43 43 H 1.09006 * 109.50846 * 178.60449 * 9 8 7 44 44 H 1.09001 * 109.47276 * 204.03252 * 15 14 12 45 45 H 1.09000 * 109.46761 * 324.03755 * 15 14 12 46 46 H 1.09007 * 109.47234 * 304.96238 * 16 15 14 47 47 H 1.08999 * 109.47048 * 64.95942 * 16 15 14 48 48 H 1.08996 * 109.47094 * 184.96489 * 16 15 14 49 49 H 1.09003 * 112.94129 * 350.33360 * 17 14 12 50 50 H 1.08996 * 113.77419 * 336.34984 * 18 17 14 51 51 H 1.09006 * 113.76793 * 107.74564 * 18 17 14 52 52 H 0.97001 * 119.99772 * 180.02562 * 23 22 20 53 53 H 1.08999 * 113.77219 * 221.15090 * 28 19 18 54 54 H 1.08998 * 113.87437 * 89.76579 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.6346 3.5361 -1.2159 7 6 4.1142 4.9884 -1.1476 8 8 5.5340 5.0089 -0.9775 9 6 5.9828 4.3283 0.1975 10 6 5.5223 2.8692 0.1429 11 1 5.9855 2.3729 -0.7099 12 6 5.9249 2.1664 1.4138 13 8 5.1419 2.0860 2.3364 14 7 7.1551 1.6275 1.5252 15 6 7.5061 0.8417 2.7107 16 6 7.0283 -0.6000 2.5268 17 6 8.1415 1.8273 0.4605 18 6 9.0056 0.5856 0.1751 19 7 10.1431 1.5250 0.0834 20 6 11.3598 1.4994 -0.5443 21 1 12.0318 2.3401 -0.4541 22 6 11.7297 0.3929 -1.2965 23 7 10.9109 -0.6319 -1.4060 24 14 13.3892 0.3583 -2.1533 25 1 14.4705 0.4829 -1.1432 26 1 13.5412 -0.9244 -2.8862 27 1 13.4749 1.4888 -3.1124 28 6 9.4404 2.5019 0.9376 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 2.5472 3.5148 -1.2882 39 1 4.0672 3.0507 -2.0907 40 1 3.6391 5.4893 -0.3040 41 1 3.8508 5.5032 -2.0717 42 1 5.5622 4.8098 1.0803 43 1 7.0712 4.3648 0.2460 44 1 8.5876 0.8515 2.8461 45 1 7.0260 1.2744 3.5885 46 1 5.9612 -0.6036 2.3039 47 1 7.5730 -1.0610 1.7030 48 1 7.2099 -1.1626 3.4425 49 1 7.7148 2.2802 -0.4345 50 1 9.0730 -0.1053 1.0154 51 1 8.7661 0.0906 -0.7661 52 1 11.1695 -1.4052 -1.9313 53 1 9.5474 3.5341 0.6042 54 1 9.6349 2.3768 2.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950990900.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:40 Heat of formation + Delta-G solvation = -33.867933 kcal Electronic energy + Delta-G solvation = -32144.296244 eV Core-core repulsion = 28117.584024 eV Total energy + Delta-G solvation = -4026.712220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.96458 -40.33460 -39.19344 -37.58780 -36.02369 -35.21550 -34.00688 -33.14907 -31.36043 -30.52409 -29.37090 -27.48573 -26.69512 -26.08040 -25.19972 -24.14313 -23.65865 -22.10019 -21.68850 -21.43424 -19.67114 -19.02883 -18.48379 -17.73084 -17.48308 -16.99747 -16.76216 -16.59412 -16.20828 -15.93946 -15.74285 -15.67463 -15.39966 -15.11757 -14.79101 -14.50675 -14.39766 -14.15011 -13.95041 -13.76583 -13.51563 -13.43770 -13.25142 -13.22208 -12.93350 -12.84686 -12.69816 -12.51637 -12.48327 -12.23176 -12.18525 -12.00095 -11.94380 -11.91376 -11.87566 -11.63673 -11.50605 -11.34252 -10.98134 -10.85336 -10.55564 -9.63645 -9.46836 -8.94144 -7.91487 -5.25033 1.43788 1.47468 1.49851 1.55835 1.80519 2.47499 2.60136 2.81815 3.25790 3.32973 3.51334 3.64370 3.76590 3.79359 3.88360 3.94455 4.06182 4.08664 4.18626 4.21304 4.26087 4.28815 4.33775 4.38887 4.39573 4.50183 4.50983 4.62523 4.67659 4.69492 4.76426 4.78825 4.85116 4.85954 4.89909 4.94594 4.95928 4.98609 5.06985 5.18804 5.23407 5.26261 5.35524 5.36980 5.44326 5.46574 5.58848 5.75606 5.89417 5.90895 6.04363 6.37495 6.90168 7.09724 7.59349 8.51472 9.24942 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003217 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.406071 B = 8702.214773 C = 9285.108320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.053 3.947 5 N -0.521 5.521 6 C 0.015 3.985 7 C 0.057 3.943 8 O -0.391 6.391 9 C 0.083 3.917 10 C 0.032 3.968 11 H 0.064 0.936 12 C 0.527 3.473 13 O -0.548 6.548 14 N -0.592 5.592 15 C 0.113 3.887 16 C -0.159 4.159 17 C 0.106 3.894 18 C 0.158 3.842 19 N -0.634 5.634 20 C -0.233 4.233 21 H 0.087 0.913 22 C -0.062 4.062 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.276 1.276 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.115 0.885 50 H 0.035 0.965 51 H 0.041 0.959 52 H 0.248 0.752 53 H 0.066 0.934 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.596 6.722 2.721 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.075 4.075 5 N -0.247 5.247 6 C -0.112 4.112 7 C -0.020 4.020 8 O -0.309 6.309 9 C 0.005 3.995 10 C -0.080 4.080 11 H 0.082 0.918 12 C 0.314 3.686 13 O -0.425 6.425 14 N -0.324 5.324 15 C -0.009 4.009 16 C -0.217 4.217 17 C 0.001 3.999 18 C 0.032 3.968 19 N -0.361 5.361 20 C -0.361 4.361 21 H 0.105 0.895 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.805 3.195 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.202 1.202 28 C -0.013 4.013 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.133 0.867 50 H 0.053 0.947 51 H 0.060 0.940 52 H 0.057 0.943 53 H 0.084 0.916 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.838 6.896 3.303 20.331 hybrid contribution 1.504 -1.268 -0.952 2.186 sum -17.334 5.628 2.351 18.376 Atomic orbital electron populations 1.21722 0.94404 1.02075 1.02189 1.21482 0.97022 0.96065 1.01657 1.21517 0.92307 0.97404 1.02755 1.22231 0.97407 0.87842 0.99999 1.62056 1.07714 1.16351 1.38561 1.23007 1.03031 0.95310 0.89862 1.22955 0.80092 0.95092 1.03840 1.88028 1.23747 1.75243 1.43907 1.22495 1.00429 0.87611 0.88921 1.22314 0.91022 0.99053 0.95579 0.91810 1.20319 0.81198 0.78306 0.88763 1.90646 1.51437 1.59682 1.40766 1.48157 1.12164 1.51229 1.20857 1.21425 1.00998 0.91216 0.87285 1.22108 1.00688 0.96182 1.02761 1.23691 0.87105 0.98951 0.90113 1.22603 0.83969 0.91848 0.98398 1.46025 1.16522 1.17922 1.55625 1.19324 0.92429 1.01691 1.22632 0.89547 1.25580 1.01946 0.96170 1.01885 1.69981 1.37454 1.07307 1.45171 0.85183 0.79473 0.76563 0.78291 1.20440 1.22249 1.20157 1.23105 0.88547 0.94763 0.94869 0.92251 0.92625 0.91991 0.92134 0.92944 0.91692 0.90583 0.95540 0.92037 0.86739 0.94204 0.91537 0.85694 0.91557 0.87567 0.90090 0.89896 0.93461 0.93308 0.89884 0.86686 0.94705 0.94043 0.94270 0.91630 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.12 -2.21 5.93 30.59 0.18 -2.03 16 3 C -0.10 -1.97 5.05 30.60 0.15 -1.82 16 4 C 0.05 1.32 4.62 86.30 0.40 1.71 16 5 N -0.52 -13.09 4.30 -874.37 -3.76 -16.85 16 6 C 0.02 0.30 5.38 86.31 0.46 0.76 16 7 C 0.06 1.04 7.01 72.02 0.50 1.55 16 8 O -0.39 -9.80 10.83 -148.98 -1.61 -11.41 16 9 C 0.08 2.13 6.13 72.01 0.44 2.57 16 10 C 0.03 0.90 1.53 44.18 0.07 0.97 16 11 H 0.06 1.91 6.43 -2.39 -0.02 1.90 16 12 C 0.53 16.44 5.79 87.66 0.51 16.95 16 13 O -0.55 -19.43 14.90 -3.02 -0.04 -19.48 16 14 N -0.59 -18.47 2.71 -803.56 -2.17 -20.65 16 15 C 0.11 3.32 5.16 86.38 0.45 3.76 16 16 C -0.16 -4.54 9.98 71.98 0.72 -3.82 16 17 C 0.11 3.70 3.74 46.75 0.17 3.88 16 18 C 0.16 7.05 6.62 86.44 0.57 7.62 16 19 N -0.63 -30.69 3.70 -716.82 -2.65 -33.34 16 20 C -0.23 -12.51 10.70 84.03 0.90 -11.61 16 21 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 22 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 23 N -0.95 -55.56 11.39 21.65 0.25 -55.31 16 24 Si 0.98 44.54 29.55 68.60 2.03 46.57 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 28 C 0.11 4.19 8.43 86.49 0.73 4.92 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.22 6.40 -2.39 -0.02 1.20 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.86 5.99 -2.39 -0.01 1.84 16 38 H 0.11 1.70 6.25 -2.39 -0.01 1.68 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.11 2.67 7.40 -2.38 -0.02 2.65 16 44 H 0.08 2.44 6.13 -2.39 -0.01 2.42 16 45 H 0.08 2.35 7.53 -2.39 -0.02 2.33 16 46 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.05 1.56 6.43 -2.39 -0.02 1.55 16 48 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.12 3.93 5.43 -2.39 -0.01 3.92 16 50 H 0.04 1.59 5.23 -2.39 -0.01 1.57 16 51 H 0.04 2.13 7.17 -2.38 -0.02 2.11 16 52 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 53 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 54 H 0.05 1.80 6.93 -2.39 -0.02 1.79 16 Total: -1.00 -65.72 407.63 0.34 -65.38 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.87 Total: 24.01 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 7.44 Total: 21.08 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -8.34 Total: -126.15 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.66 Total: -30.89 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.72 0.34 -65.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950990900.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.514 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds