Wall clock time and date at job start Tue Mar 31 2020 23:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47580 * 2 1 4 4 C 1.52995 * 109.47409 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47165 * 179.97438 * 4 3 2 6 6 C 1.47017 * 110.99657 * 46.36893 * 5 4 3 7 7 C 1.53096 * 109.25622 * 182.39039 * 6 5 4 8 8 O 1.43022 * 109.25871 * 303.15283 * 7 6 5 9 9 C 1.43017 * 113.73780 * 58.66821 * 8 7 6 10 10 C 1.47015 * 110.99691 * 170.00319 * 5 4 3 11 11 H 1.09003 * 109.50411 * 297.58343 * 10 5 4 12 12 C 1.50699 * 109.50986 * 57.67692 * 10 5 4 13 13 O 1.21278 * 119.99673 * 7.34112 * 12 10 5 14 14 N 1.34774 * 120.00161 * 187.34170 * 12 10 5 15 15 C 1.46499 * 120.00142 * 182.99932 * 14 12 10 16 16 C 1.53003 * 109.46678 * 85.72076 * 15 14 12 17 17 C 1.46504 * 119.99883 * 3.00037 * 14 12 10 18 18 C 1.53944 * 113.73806 * 211.04019 * 17 14 12 19 19 N 1.47818 * 86.03623 * 222.08119 * 18 17 14 20 20 C 1.36928 * 134.45996 * 204.64535 * 19 18 17 21 21 H 1.08003 * 120.00160 * 184.72490 * 20 19 18 22 22 C 1.38819 * 120.00028 * 4.72357 * 20 19 18 23 23 N 1.31615 * 119.99823 * 5.20975 * 22 20 19 24 24 Si 1.86799 * 119.99818 * 185.21188 * 22 20 19 25 25 H 1.48499 * 109.47290 * 94.99413 * 24 22 20 26 26 H 1.48500 * 109.46670 * 214.99512 * 24 22 20 27 27 H 1.48502 * 109.47464 * 334.99397 * 24 22 20 28 28 C 1.47585 * 91.04661 * 24.55245 * 19 18 17 29 29 H 1.09003 * 109.46985 * 300.00197 * 1 2 3 30 30 H 1.08999 * 109.47273 * 59.99604 * 1 2 3 31 31 H 1.09000 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46956 * 119.99902 * 2 1 3 33 33 H 1.09003 * 109.47452 * 240.00058 * 2 1 3 34 34 H 1.08999 * 109.47141 * 300.00476 * 3 2 1 35 35 H 1.09003 * 109.47123 * 59.99887 * 3 2 1 36 36 H 1.08998 * 109.47364 * 300.00037 * 4 3 2 37 37 H 1.09003 * 109.47261 * 60.00280 * 4 3 2 38 38 H 1.08993 * 109.50936 * 302.32583 * 6 5 4 39 39 H 1.08998 * 109.50634 * 62.46074 * 6 5 4 40 40 H 1.09003 * 109.50656 * 183.21707 * 7 6 5 41 41 H 1.08995 * 109.50786 * 63.08476 * 7 6 5 42 42 H 1.08998 * 109.50457 * 181.39546 * 9 8 7 43 43 H 1.09002 * 109.53988 * 61.29050 * 9 8 7 44 44 H 1.08999 * 109.47034 * 205.72309 * 15 14 12 45 45 H 1.09003 * 109.47034 * 325.72786 * 15 14 12 46 46 H 1.09009 * 109.46765 * 179.97438 * 16 15 14 47 47 H 1.08994 * 109.47961 * 300.00189 * 16 15 14 48 48 H 1.09003 * 109.46808 * 60.00572 * 16 15 14 49 49 H 1.09004 * 112.94521 * 342.62975 * 17 14 12 50 50 H 1.08992 * 113.77612 * 336.34655 * 18 17 14 51 51 H 1.09002 * 113.76782 * 107.75210 * 18 17 14 52 52 H 0.96999 * 119.99821 * 180.02562 * 23 22 20 53 53 H 1.09004 * 113.76756 * 221.15015 * 28 19 18 54 54 H 1.09001 * 113.87526 * 89.76354 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.3420 3.6404 0.9927 7 6 3.8406 5.0859 0.9171 8 8 5.2561 5.1079 1.1205 9 6 5.9864 4.3268 0.1709 10 6 5.5096 2.8736 0.2389 11 1 5.7293 2.4635 1.2247 12 6 6.2192 2.0614 -0.8137 13 8 5.5979 1.6099 -1.7523 14 7 7.5442 1.8367 -0.7119 15 6 8.2461 1.1034 -1.7683 16 6 8.6604 2.0754 -2.8749 17 6 8.2826 2.3258 0.4551 18 6 9.7468 2.6927 0.1529 19 7 10.0701 2.0280 1.4329 20 6 11.0920 2.1353 2.3380 21 1 11.1375 1.4645 3.1832 22 6 12.0697 3.1062 2.1691 23 7 11.9601 3.9887 1.1988 24 14 13.5408 3.1602 3.3191 25 1 14.6734 2.4185 2.7091 26 1 13.9393 4.5725 3.5468 27 1 13.1791 2.5327 4.6155 28 6 8.8486 1.2044 1.3450 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9330 0.9287 0.8908 37 1 3.9337 0.9285 -0.8891 38 1 2.2731 3.6126 0.7817 39 1 3.5271 3.2433 1.9907 40 1 3.3526 5.6801 1.6897 41 1 3.6074 5.5005 -0.0635 42 1 7.0503 4.3721 0.4037 43 1 5.8163 4.7192 -0.8317 44 1 9.1336 0.6272 -1.3518 45 1 7.5854 0.3417 -2.1824 46 1 9.1830 1.5299 -3.6607 47 1 7.7729 2.5517 -3.2913 48 1 9.3210 2.8371 -2.4607 49 1 7.7426 3.0945 1.0080 50 1 10.1555 2.1855 -0.7210 51 1 9.9398 3.7655 0.1527 52 1 12.6434 4.6669 1.0806 53 1 8.3258 1.0910 2.2947 54 1 8.9910 0.2585 0.8224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950990903.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:43 Heat of formation + Delta-G solvation = -26.264699 kcal Electronic energy + Delta-G solvation = -32096.016366 eV Core-core repulsion = 28069.633846 eV Total energy + Delta-G solvation = -4026.382519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00990 -40.33025 -39.22631 -37.63672 -36.02631 -35.15508 -34.00790 -33.24073 -31.30699 -30.45982 -29.38757 -27.55467 -26.61505 -26.06256 -25.19980 -24.18141 -23.65194 -22.27100 -21.53372 -21.32393 -19.80712 -19.00049 -18.45446 -17.54612 -17.48117 -17.10207 -16.78571 -16.72342 -16.11133 -15.94041 -15.84228 -15.71510 -15.32912 -15.09083 -14.92491 -14.48265 -14.37477 -14.02903 -14.01737 -13.63777 -13.59035 -13.36619 -13.33224 -13.13882 -12.90932 -12.85898 -12.71996 -12.62575 -12.27668 -12.20150 -12.12494 -12.02811 -11.92476 -11.89494 -11.82363 -11.59025 -11.51813 -11.36004 -10.95227 -10.87009 -10.49308 -9.66551 -9.39071 -8.92529 -7.90156 -5.25525 1.44918 1.48126 1.48561 1.57732 1.80047 2.47344 2.61563 2.82332 3.24826 3.31839 3.48957 3.62378 3.73553 3.86473 3.89208 3.96772 4.03244 4.07593 4.15092 4.20774 4.26336 4.31657 4.35789 4.39698 4.42974 4.52705 4.53484 4.63229 4.70918 4.74000 4.74515 4.80619 4.81985 4.86244 4.90165 4.97408 4.97677 4.99882 5.13721 5.21427 5.24227 5.30133 5.35483 5.38484 5.45718 5.50201 5.59916 5.78524 5.92144 5.96497 6.03783 6.37883 6.90708 7.10017 7.59392 8.51557 9.24849 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.647777 B = 9279.690755 C = 9769.672912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.049 3.951 5 N -0.523 5.523 6 C 0.014 3.986 7 C 0.053 3.947 8 O -0.392 6.392 9 C 0.076 3.924 10 C 0.037 3.963 11 H 0.071 0.929 12 C 0.525 3.475 13 O -0.547 6.547 14 N -0.591 5.591 15 C 0.113 3.887 16 C -0.159 4.159 17 C 0.101 3.899 18 C 0.153 3.847 19 N -0.633 5.633 20 C -0.233 4.233 21 H 0.083 0.917 22 C -0.060 4.060 23 N -0.946 5.946 24 Si 0.975 3.025 25 H -0.290 1.290 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.111 3.889 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.022 0.978 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.043 0.957 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.120 0.880 50 H 0.038 0.962 51 H 0.055 0.945 52 H 0.250 0.750 53 H 0.057 0.943 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.760 -3.248 -3.037 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.079 4.079 5 N -0.249 5.249 6 C -0.113 4.113 7 C -0.023 4.023 8 O -0.310 6.310 9 C -0.001 4.001 10 C -0.075 4.075 11 H 0.089 0.911 12 C 0.313 3.687 13 O -0.424 6.424 14 N -0.323 5.323 15 C -0.009 4.009 16 C -0.218 4.218 17 C -0.003 4.003 18 C 0.027 3.973 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.101 0.899 22 C -0.254 4.254 23 N -0.594 5.594 24 Si 0.804 3.196 25 H -0.217 1.217 26 H -0.221 1.221 27 H -0.193 1.193 28 C -0.016 4.016 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.143 0.857 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.137 0.863 50 H 0.055 0.945 51 H 0.073 0.927 52 H 0.059 0.941 53 H 0.075 0.925 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.815 -3.062 -3.704 21.363 hybrid contribution 1.488 -0.462 1.022 1.864 sum -19.327 -3.524 -2.681 19.828 Atomic orbital electron populations 1.21729 0.94527 1.02071 1.02158 1.21469 0.96864 0.96016 1.01758 1.21674 0.92655 0.97693 1.02761 1.22391 0.96717 0.87855 1.00889 1.62079 1.00620 1.12792 1.49420 1.23038 1.00791 0.93953 0.93504 1.23002 0.80129 0.95791 1.03377 1.88049 1.19787 1.69419 1.53794 1.22659 0.96622 0.87046 0.93815 1.22203 0.90677 0.97600 0.97022 0.91137 1.20347 0.81751 0.80105 0.86525 1.90596 1.65611 1.51756 1.34486 1.48134 1.07284 1.55164 1.21761 1.21426 0.96932 0.94711 0.87807 1.22091 1.01178 0.99968 0.98516 1.23853 0.92834 0.97316 0.86327 1.22708 0.88250 0.98413 0.87929 1.45972 1.24257 1.44257 1.21559 1.19314 1.00974 1.12879 1.03007 0.89889 1.25558 1.01842 0.97437 1.00522 1.69966 1.35696 1.18983 1.34754 0.85108 0.79355 0.76517 0.78630 1.21670 1.22081 1.19252 1.23106 0.86426 0.94386 0.97641 0.92155 0.92542 0.92265 0.92225 0.92657 0.91343 0.90667 0.95927 0.90212 0.86467 0.93913 0.85691 0.91805 0.87972 0.91892 0.90285 0.90064 0.89980 0.93158 0.93054 0.86297 0.94483 0.92693 0.94128 0.92452 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.97 5.93 30.59 0.18 -1.79 16 3 C -0.11 -1.94 4.48 30.59 0.14 -1.80 16 4 C 0.05 1.16 4.62 86.30 0.40 1.56 16 5 N -0.52 -13.02 4.46 -874.39 -3.90 -16.93 16 6 C 0.01 0.28 4.94 86.31 0.43 0.70 16 7 C 0.05 1.04 7.01 72.01 0.50 1.55 16 8 O -0.39 -10.72 10.83 -148.98 -1.61 -12.33 16 9 C 0.08 2.15 5.91 72.01 0.43 2.57 16 10 C 0.04 1.04 1.51 44.18 0.07 1.11 16 11 H 0.07 2.02 7.61 -2.39 -0.02 2.00 16 12 C 0.53 16.41 6.57 87.66 0.58 16.98 16 13 O -0.55 -19.10 13.67 -3.02 -0.04 -19.14 16 14 N -0.59 -18.45 2.69 -803.50 -2.16 -20.61 16 15 C 0.11 3.31 5.19 86.38 0.45 3.76 16 16 C -0.16 -4.43 9.95 71.98 0.72 -3.72 16 17 C 0.10 3.55 3.55 46.75 0.17 3.72 16 18 C 0.15 6.72 6.50 86.44 0.56 7.28 16 19 N -0.63 -30.76 3.70 -716.65 -2.65 -33.41 16 20 C -0.23 -12.59 10.69 84.04 0.90 -11.69 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 22 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 23 N -0.95 -54.77 11.29 21.65 0.24 -54.52 16 24 Si 0.98 44.50 29.56 68.60 2.03 46.52 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C 0.11 4.21 8.48 86.48 0.73 4.94 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.11 6.28 -2.39 -0.01 1.10 16 36 H 0.02 0.55 8.08 -2.39 -0.02 0.53 16 37 H 0.08 2.33 5.74 -2.39 -0.01 2.32 16 38 H 0.12 1.70 6.05 -2.39 -0.01 1.69 16 39 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.10 3.13 5.46 -2.39 -0.01 3.12 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.38 6.25 -2.39 -0.01 2.37 16 45 H 0.08 2.30 7.51 -2.39 -0.02 2.28 16 46 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.05 1.58 6.70 -2.39 -0.02 1.57 16 49 H 0.12 4.12 4.34 -2.38 -0.01 4.11 16 50 H 0.04 1.63 5.33 -2.39 -0.01 1.62 16 51 H 0.05 2.77 6.87 -2.39 -0.02 2.76 16 52 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 53 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 54 H 0.05 1.78 7.47 -2.39 -0.02 1.76 16 Total: -1.00 -64.64 403.93 0.20 -64.44 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.87 Total: 24.79 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 7.42 Total: 21.19 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -8.47 Total: -125.47 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.65 Total: -31.47 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.64 0.20 -64.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950990903.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds