Wall clock time and date at job start Tue Mar 31 2020 23:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52989 * 109.47535 * 2 1 4 4 C 1.52993 * 109.47489 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47677 * 179.97438 * 4 3 2 6 6 C 1.47017 * 110.99993 * 65.04925 * 5 4 3 7 7 C 1.53092 * 109.29348 * 177.59061 * 6 5 4 8 8 O 1.43103 * 109.21303 * 56.82446 * 7 6 5 9 9 C 1.43017 * 113.76492 * 301.35822 * 8 7 6 10 10 C 1.47011 * 110.99950 * 301.41301 * 5 4 3 11 11 H 1.08997 * 109.50787 * 62.45387 * 10 5 4 12 12 C 1.50699 * 109.51006 * 302.36816 * 10 5 4 13 13 O 1.21288 * 119.99562 * 331.91993 * 12 10 5 14 14 N 1.34770 * 120.00338 * 151.91032 * 12 10 5 15 15 C 1.46504 * 120.00284 * 179.97438 * 14 12 10 16 16 H 1.09005 * 109.46752 * 35.00267 * 15 14 12 17 17 C 1.52999 * 109.47285 * 275.00839 * 15 14 12 18 18 C 1.52997 * 109.47019 * 155.00308 * 15 14 12 19 19 C 1.53942 * 113.74422 * 278.74140 * 18 15 14 20 20 N 1.47810 * 86.04163 * 222.08877 * 19 18 15 21 21 C 1.36933 * 134.45951 * 204.64780 * 20 19 18 22 22 H 1.08004 * 119.99865 * 179.86248 * 21 20 19 23 23 C 1.38810 * 119.99952 * 359.86770 * 21 20 19 24 24 N 1.31619 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00071 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47093 * 59.99275 * 25 23 21 27 27 H 1.48502 * 109.47383 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47004 * 299.99512 * 25 23 21 29 29 C 1.47585 * 91.04957 * 24.54725 * 20 19 18 30 30 H 1.08996 * 109.47660 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46642 * 300.00274 * 1 2 3 32 32 H 1.08995 * 109.47099 * 59.99629 * 1 2 3 33 33 H 1.09001 * 109.46642 * 239.99726 * 2 1 3 34 34 H 1.09006 * 109.46624 * 120.00363 * 2 1 3 35 35 H 1.09001 * 109.47379 * 60.00177 * 3 2 1 36 36 H 1.09004 * 109.47115 * 300.00265 * 3 2 1 37 37 H 1.09004 * 109.47291 * 59.99883 * 4 3 2 38 38 H 1.09004 * 109.46962 * 300.00117 * 4 3 2 39 39 H 1.09004 * 109.50016 * 297.54189 * 6 5 4 40 40 H 1.08997 * 109.50683 * 57.62538 * 6 5 4 41 41 H 1.09004 * 109.50612 * 176.80540 * 7 6 5 42 42 H 1.08999 * 109.50784 * 296.92722 * 7 6 5 43 43 H 1.08997 * 109.50358 * 298.73442 * 9 8 7 44 44 H 1.09000 * 109.50915 * 178.60529 * 9 8 7 45 45 H 0.97002 * 120.00108 * 0.02562 * 14 12 10 46 46 H 1.09005 * 109.46759 * 299.99424 * 17 15 14 47 47 H 1.09005 * 109.47458 * 59.99552 * 17 15 14 48 48 H 1.09000 * 109.46938 * 179.97438 * 17 15 14 49 49 H 1.08998 * 112.94630 * 50.34150 * 18 15 14 50 50 H 1.09001 * 113.77159 * 336.35636 * 19 18 15 51 51 H 1.09004 * 113.76770 * 107.74660 * 19 18 15 52 52 H 0.97001 * 119.99935 * 180.02562 * 24 23 21 53 53 H 1.08998 * 113.77224 * 221.15294 * 29 20 19 54 54 H 1.09007 * 113.86847 * 89.76819 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0599 2.8272 -0.0013 6 6 3.6902 3.5174 1.2431 7 6 4.2699 4.9342 1.2272 8 8 3.7986 5.6228 0.0645 9 6 4.1416 4.9786 -1.1654 10 6 3.5606 3.5621 -1.1726 11 1 2.4727 3.6147 -1.1327 12 6 3.9840 2.8500 -2.4314 13 8 4.9971 2.1831 -2.4394 14 7 3.2370 2.9541 -3.5483 15 6 3.6490 2.2623 -4.7723 16 1 4.1163 1.3123 -4.5129 17 6 4.6498 3.1310 -5.5369 18 6 2.4225 2.0046 -5.6498 19 6 1.6088 0.7671 -5.2299 20 7 1.5063 0.4712 -6.6744 21 6 0.6216 -0.2301 -7.4493 22 1 0.7736 -0.2970 -8.5165 23 6 -0.4707 -0.8549 -6.8633 24 7 -0.6557 -0.7736 -5.5627 25 14 -1.6772 -1.8122 -7.9203 26 1 -0.9624 -2.9142 -8.6129 27 1 -2.7466 -2.3798 -7.0604 28 1 -2.2815 -0.9040 -8.9278 29 6 2.7383 1.2369 -6.9464 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6769 1.9563 0.8900 36 1 1.6768 1.9562 -0.8900 37 1 3.9331 0.9286 -0.8909 38 1 3.9337 0.9283 0.8891 39 1 2.6042 3.5693 1.3216 40 1 4.0910 2.9696 2.0960 41 1 3.9506 5.4682 2.1222 42 1 5.3584 4.8819 1.2028 43 1 5.2263 4.9275 -1.2594 44 1 3.7295 5.5452 -2.0004 45 1 2.4269 3.4877 -3.5421 46 1 4.1824 4.0810 -5.7963 47 1 5.5236 3.3147 -4.9117 48 1 4.9566 2.6161 -6.4473 49 1 1.8158 2.8968 -5.8049 50 1 2.1860 0.0309 -4.6705 51 1 0.6547 1.0072 -4.7605 52 1 -1.4187 -1.2105 -5.1531 53 1 2.6844 1.8514 -7.8450 54 1 3.6491 0.6405 -6.8930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970215364.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:24 Heat of formation + Delta-G solvation = -51.112201 kcal Electronic energy + Delta-G solvation = -31834.631906 eV Core-core repulsion = 27807.171918 eV Total energy + Delta-G solvation = -4027.459988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.76129 -40.34393 -39.30520 -37.71017 -36.14095 -35.02285 -34.20076 -32.90730 -31.36367 -30.46537 -29.34787 -27.48357 -26.65089 -25.89332 -25.47619 -23.88759 -23.24742 -22.51531 -21.70390 -21.12225 -20.20604 -18.77068 -18.22150 -17.71062 -17.64257 -17.07480 -16.90570 -16.39087 -16.08381 -15.93337 -15.73589 -15.61129 -15.39130 -15.07864 -14.91933 -14.67571 -14.36349 -14.20997 -13.96619 -13.77663 -13.41098 -13.28513 -13.22846 -13.09707 -12.89714 -12.77416 -12.70408 -12.63627 -12.55457 -12.48217 -12.05923 -12.03871 -11.97799 -11.74822 -11.60689 -11.47902 -11.40464 -11.25581 -10.97980 -10.86572 -10.53939 -10.02521 -9.33511 -8.92358 -7.90615 -5.24174 1.43908 1.47158 1.53110 1.55879 2.03609 2.46545 2.67889 2.95269 3.29738 3.37460 3.64587 3.71951 3.77089 3.81262 3.85625 3.96134 4.00200 4.07748 4.11864 4.25581 4.28855 4.29930 4.40155 4.49591 4.59112 4.60269 4.61743 4.67426 4.70022 4.74177 4.77890 4.82129 4.82482 4.86628 4.91608 4.96469 5.01462 5.07729 5.10485 5.19227 5.24777 5.27720 5.34494 5.36100 5.48183 5.56061 5.66137 5.76896 5.93002 5.93479 6.06212 6.58690 6.91180 7.26740 7.60534 8.56333 9.25532 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.003279 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.922494 B = 8536.452475 C =10167.830910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.055 3.945 5 N -0.524 5.524 6 C 0.015 3.985 7 C 0.058 3.942 8 O -0.389 6.389 9 C 0.082 3.918 10 C 0.034 3.966 11 H 0.079 0.921 12 C 0.523 3.477 13 O -0.560 6.560 14 N -0.710 5.710 15 C 0.162 3.838 16 H 0.056 0.944 17 C -0.149 4.149 18 C -0.109 4.109 19 C 0.172 3.828 20 N -0.644 5.644 21 C -0.238 4.238 22 H 0.083 0.917 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.977 3.023 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.273 1.273 29 C 0.130 3.870 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.121 0.879 45 H 0.410 0.590 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.105 0.895 50 H -0.001 1.001 51 H 0.041 0.959 52 H 0.247 0.753 53 H 0.065 0.935 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 13.581 14.707 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.186 4.186 4 C -0.073 4.073 5 N -0.249 5.249 6 C -0.112 4.112 7 C -0.019 4.019 8 O -0.307 6.307 9 C 0.004 3.996 10 C -0.079 4.079 11 H 0.097 0.903 12 C 0.309 3.691 13 O -0.437 6.437 14 N -0.362 5.362 15 C 0.057 3.943 16 H 0.075 0.925 17 C -0.207 4.207 18 C -0.129 4.129 19 C 0.046 3.954 20 N -0.370 5.370 21 C -0.366 4.366 22 H 0.101 0.899 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.805 3.195 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.199 1.199 29 C 0.005 3.995 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.246 0.754 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.123 0.877 50 H 0.017 0.983 51 H 0.060 0.940 52 H 0.056 0.944 53 H 0.083 0.917 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.256 13.085 14.598 21.679 hybrid contribution -1.879 -1.393 -0.592 2.413 sum 7.378 11.691 14.006 19.680 Atomic orbital electron populations 1.21724 0.95615 1.01676 1.01596 1.21378 0.96125 0.96430 1.01571 1.22177 0.96745 0.97629 1.02020 1.22252 0.92788 0.89199 1.03044 1.62245 1.59121 1.02146 1.01392 1.22972 0.99938 0.96047 0.92226 1.22934 0.99032 0.91163 0.88751 1.88015 1.78756 1.49532 1.14387 1.22541 0.99837 0.89014 0.88198 1.22323 0.99913 0.95909 0.89720 0.90291 1.20472 0.83310 0.80743 0.84621 1.90682 1.26601 1.41562 1.84861 1.46048 1.28052 1.51582 1.10524 1.20797 0.94434 0.95512 0.83556 0.92540 1.22043 0.98098 1.00481 1.00077 1.23443 0.95646 0.98073 0.95709 1.22122 0.96023 0.91275 0.85964 1.46419 1.24890 1.61151 1.04572 1.19404 1.01717 1.24712 0.90805 0.89882 1.25607 1.00797 1.02343 0.97153 1.70005 1.30862 1.48969 1.10097 0.85184 0.78253 0.78559 0.77536 1.20661 1.22063 1.19916 1.22675 0.88795 0.91666 0.96400 0.92993 0.91201 0.94341 0.94394 0.90507 0.90118 0.93331 0.92690 0.89088 0.93019 0.87564 0.85657 0.92141 0.92392 0.86153 0.75378 0.90507 0.93075 0.90928 0.87677 0.98287 0.94044 0.94401 0.91702 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.12 -2.86 5.93 30.59 0.18 -2.67 16 3 C -0.15 -3.28 4.51 30.59 0.14 -3.14 16 4 C 0.05 1.31 4.93 86.30 0.43 1.73 16 5 N -0.52 -11.63 4.48 -874.42 -3.92 -15.55 16 6 C 0.02 0.24 5.31 86.31 0.46 0.70 16 7 C 0.06 0.83 7.02 72.01 0.51 1.34 16 8 O -0.39 -7.34 10.83 -148.98 -1.61 -8.95 16 9 C 0.08 1.55 6.28 72.01 0.45 2.01 16 10 C 0.03 0.74 1.87 44.18 0.08 0.83 16 11 H 0.08 1.66 6.42 -2.39 -0.02 1.64 16 12 C 0.52 14.48 5.98 87.66 0.52 15.01 16 13 O -0.56 -19.94 15.04 -3.06 -0.05 -19.99 16 14 N -0.71 -18.17 5.08 -442.53 -2.25 -20.41 16 15 C 0.16 4.78 2.38 44.99 0.11 4.88 16 16 H 0.06 2.04 7.42 -2.38 -0.02 2.03 16 17 C -0.15 -3.54 9.31 71.98 0.67 -2.87 16 18 C -0.11 -3.74 3.47 -10.13 -0.04 -3.77 16 19 C 0.17 8.14 7.08 86.44 0.61 8.75 16 20 N -0.64 -33.11 3.70 -716.04 -2.65 -35.76 16 21 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 22 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 24 N -0.95 -57.56 11.39 21.65 0.25 -57.32 16 25 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 29 C 0.13 5.03 7.64 86.49 0.66 5.69 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.49 6.58 -2.39 -0.02 1.48 16 36 H 0.05 1.23 6.43 -2.38 -0.02 1.22 16 37 H 0.05 1.72 6.26 -2.38 -0.01 1.70 16 38 H 0.09 1.88 8.12 -2.38 -0.02 1.86 16 39 H 0.05 0.80 6.56 -2.38 -0.02 0.78 16 40 H 0.11 1.32 8.13 -2.39 -0.02 1.30 16 41 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.41 8.61 8.60 -92.71 -0.80 7.82 16 46 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.07 1.67 7.52 -2.39 -0.02 1.65 16 49 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 50 H 0.00 -0.03 7.99 -2.39 -0.02 -0.05 16 51 H 0.04 2.19 7.17 -2.39 -0.02 2.17 16 52 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 53 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 54 H 0.04 1.56 8.10 -2.38 -0.02 1.54 16 Total: -1.00 -72.90 416.47 -1.27 -74.17 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.07 Total: 26.18 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.86 Total: 9.65 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -8.57 Total: -129.04 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.66 Total: -28.94 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.90 -1.27 -74.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970215364.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.058 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds