Wall clock time and date at job start Tue Mar 31 2020 23:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47068 * 179.97438 * 4 3 2 6 6 C 1.47010 * 111.00035 * 46.36971 * 5 4 3 7 7 C 1.53092 * 109.25841 * 182.38848 * 6 5 4 8 8 O 1.43016 * 109.26033 * 303.15164 * 7 6 5 9 9 C 1.43012 * 113.73806 * 58.66865 * 8 7 6 10 10 C 1.47020 * 110.99649 * 170.00399 * 5 4 3 11 11 H 1.09000 * 109.50397 * 297.58800 * 10 5 4 12 12 C 1.50696 * 109.50785 * 57.67381 * 10 5 4 13 13 O 1.21283 * 119.99946 * 0.02562 * 12 10 5 14 14 N 1.34771 * 119.99918 * 179.97438 * 12 10 5 15 15 C 1.46504 * 120.00429 * 180.02562 * 14 12 10 16 16 H 1.09004 * 109.46221 * 34.99823 * 15 14 12 17 17 C 1.52992 * 109.47180 * 275.00554 * 15 14 12 18 18 C 1.52992 * 109.47388 * 154.99729 * 15 14 12 19 19 C 1.53501 * 114.20633 * 179.97438 * 18 15 14 20 20 N 1.47074 * 87.98318 * 87.52314 * 19 18 15 21 21 C 1.36935 * 136.05671 * 207.08663 * 20 19 18 22 22 H 1.07995 * 119.99987 * 6.49427 * 21 20 19 23 23 C 1.38811 * 119.99581 * 186.50006 * 21 20 19 24 24 N 1.31614 * 120.00556 * 6.41294 * 23 21 20 25 25 Si 1.86800 * 119.99706 * 186.41763 * 23 21 20 26 26 H 1.48501 * 109.47400 * 84.98677 * 25 23 21 27 27 H 1.48504 * 109.47045 * 204.98899 * 25 23 21 28 28 H 1.48504 * 109.47349 * 324.98598 * 25 23 21 29 29 C 1.47073 * 87.88168 * 27.34207 * 20 19 18 30 30 H 1.08995 * 109.47672 * 299.99489 * 1 2 3 31 31 H 1.09002 * 109.47512 * 59.99896 * 1 2 3 32 32 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46870 * 240.00474 * 2 1 3 34 34 H 1.08992 * 109.47500 * 120.00124 * 2 1 3 35 35 H 1.09004 * 109.46786 * 59.99751 * 3 2 1 36 36 H 1.09002 * 109.47098 * 300.00357 * 3 2 1 37 37 H 1.09003 * 109.46547 * 60.00475 * 4 3 2 38 38 H 1.08992 * 109.47502 * 300.00322 * 4 3 2 39 39 H 1.08995 * 109.50582 * 302.32805 * 6 5 4 40 40 H 1.09010 * 109.50676 * 62.45121 * 6 5 4 41 41 H 1.08999 * 109.50530 * 63.08764 * 7 6 5 42 42 H 1.09000 * 109.50723 * 183.17376 * 7 6 5 43 43 H 1.08996 * 109.50410 * 181.39475 * 9 8 7 44 44 H 1.09000 * 109.50381 * 61.26501 * 9 8 7 45 45 H 0.97003 * 120.00469 * 0.02562 * 14 12 10 46 46 H 1.09002 * 109.47161 * 299.99321 * 17 15 14 47 47 H 1.09000 * 109.47490 * 59.99194 * 17 15 14 48 48 H 1.08999 * 109.47576 * 179.97438 * 17 15 14 49 49 H 1.09007 * 113.28311 * 46.93978 * 18 15 14 50 50 H 1.09001 * 113.46856 * 332.75002 * 19 18 15 51 51 H 1.08994 * 113.46903 * 202.29959 * 19 18 15 52 52 H 0.97004 * 120.00646 * 180.02562 * 24 23 21 53 53 H 1.09001 * 113.46425 * 87.43869 * 29 20 19 54 54 H 1.09003 * 113.46427 * 217.87257 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.3418 3.6406 0.9926 7 6 3.8403 5.0861 0.9171 8 8 5.2557 5.1082 1.1205 9 6 5.9861 4.3272 0.1709 10 6 5.5094 2.8740 0.2389 11 1 5.7292 2.4639 1.2246 12 6 6.2190 2.0618 -0.8136 13 8 5.5808 1.4997 -1.6784 14 7 7.5628 1.9609 -0.7946 15 6 8.2528 1.1718 -1.8181 16 1 7.7242 1.2658 -2.7668 17 6 8.2829 -0.2980 -1.3946 18 6 9.6848 1.6857 -1.9791 19 6 10.5101 0.9306 -3.0302 20 7 9.9788 1.8595 -4.0391 21 6 9.7336 1.8178 -5.3857 22 1 9.8502 0.8908 -5.9273 23 6 9.3353 2.9671 -6.0545 24 7 9.3148 4.1221 -5.4236 25 14 8.8282 2.8746 -7.8499 26 1 7.3951 2.4961 -7.9408 27 1 9.0321 4.1986 -8.4908 28 1 9.6544 1.8555 -8.5458 29 6 9.8327 2.8550 -2.9664 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.6765 1.9563 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.9335 0.9287 -0.8892 38 1 3.9329 0.9289 0.8907 39 1 2.2728 3.6126 0.7816 40 1 3.5268 3.2434 1.9908 41 1 3.6070 5.5007 -0.0636 42 1 3.3517 5.6804 1.6891 43 1 7.0499 4.3726 0.4038 44 1 5.8152 4.7198 -0.8315 45 1 8.0733 2.4107 -0.1033 46 1 8.8114 -0.3920 -0.4459 47 1 7.2627 -0.6642 -1.2799 48 1 8.7959 -0.8853 -2.1563 49 1 10.1989 1.8333 -1.0292 50 1 10.1876 -0.1002 -3.1768 51 1 11.5864 1.0193 -2.8827 52 1 9.0362 4.9252 -5.8909 53 1 10.7305 3.4509 -2.8021 54 1 8.9332 3.4637 -3.0587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970215365.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:28 Heat of formation + Delta-G solvation = -42.304055 kcal Electronic energy + Delta-G solvation = -31481.416554 eV Core-core repulsion = 27454.338516 eV Total energy + Delta-G solvation = -4027.078038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.72582 -40.48028 -39.39564 -37.66252 -36.05413 -35.13971 -34.24834 -33.00054 -31.25232 -30.42038 -29.47653 -27.49658 -26.57820 -25.86951 -25.47872 -23.67422 -23.59314 -22.33812 -21.44264 -21.22079 -20.27599 -18.74855 -18.26643 -17.75616 -17.30613 -17.05848 -16.90232 -16.65839 -16.24500 -15.92411 -15.79341 -15.67070 -15.35477 -15.11653 -14.95265 -14.63909 -14.41778 -14.36364 -13.89426 -13.76295 -13.47558 -13.33215 -13.22471 -13.15951 -12.91834 -12.82495 -12.60688 -12.53585 -12.36643 -12.22965 -12.07307 -11.99606 -11.84894 -11.77161 -11.63077 -11.49890 -11.38345 -11.03116 -10.91944 -10.84994 -10.43567 -10.04339 -9.34902 -8.89683 -7.93392 -5.22919 1.40581 1.44683 1.50801 1.57337 2.02709 2.46091 2.63020 2.89879 3.30894 3.51348 3.58673 3.65185 3.77766 3.89629 3.90644 3.93295 3.98152 4.06559 4.18313 4.24533 4.32139 4.41163 4.42814 4.51502 4.54491 4.65279 4.68614 4.70135 4.73646 4.77345 4.79771 4.82475 4.88355 4.89638 4.95655 4.97741 5.01732 5.13554 5.20788 5.21785 5.25015 5.31337 5.36769 5.42567 5.51269 5.54959 5.72390 5.82273 5.93791 5.99208 6.04136 6.61190 6.90998 7.31240 7.60644 8.62401 9.25376 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.003040 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.222015 B = 9207.454930 C = 9539.240664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.048 3.952 5 N -0.539 5.539 6 C 0.017 3.983 7 C 0.054 3.946 8 O -0.386 6.386 9 C 0.078 3.922 10 C 0.043 3.957 11 H 0.095 0.905 12 C 0.516 3.484 13 O -0.561 6.561 14 N -0.706 5.706 15 C 0.178 3.822 16 H 0.041 0.959 17 C -0.145 4.145 18 C -0.119 4.119 19 C 0.124 3.876 20 N -0.642 5.642 21 C -0.226 4.226 22 H 0.082 0.918 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.971 3.029 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.265 1.265 29 C 0.164 3.836 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.042 0.958 45 H 0.413 0.587 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.066 0.934 49 H 0.121 0.879 50 H 0.056 0.944 51 H 0.052 0.948 52 H 0.246 0.754 53 H 0.021 0.979 54 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -4.337 21.391 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.150 4.150 4 C -0.079 4.079 5 N -0.265 5.265 6 C -0.110 4.110 7 C -0.022 4.022 8 O -0.304 6.304 9 C 0.000 4.000 10 C -0.069 4.069 11 H 0.112 0.888 12 C 0.301 3.699 13 O -0.439 6.439 14 N -0.358 5.358 15 C 0.074 3.926 16 H 0.060 0.940 17 C -0.203 4.203 18 C -0.139 4.139 19 C -0.001 4.001 20 N -0.369 5.369 21 C -0.354 4.354 22 H 0.100 0.900 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.800 3.200 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.038 3.962 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.126 0.874 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.060 0.940 45 H 0.250 0.750 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.139 0.861 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.055 0.945 53 H 0.038 0.962 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.183 -4.328 20.127 23.922 hybrid contribution 0.230 0.072 -0.866 0.899 sum -11.953 -4.256 19.261 23.064 Atomic orbital electron populations 1.21734 0.94578 1.02102 1.02092 1.21463 0.96838 0.96019 1.01735 1.21688 0.93212 0.97620 1.02446 1.22419 0.96288 0.87948 1.01255 1.61997 1.01490 1.12930 1.50063 1.22997 1.00472 0.93824 0.93682 1.22951 0.80568 0.95810 1.02912 1.87989 1.19317 1.69582 1.53498 1.22579 0.97509 0.86793 0.93080 1.22242 0.90105 0.97507 0.97088 0.88774 1.20633 0.82661 0.80745 0.85817 1.90636 1.66179 1.48349 1.38731 1.45905 1.06018 1.52446 1.31449 1.20295 0.90905 0.91140 0.90290 0.94030 1.22005 1.01457 0.94141 1.02717 1.23093 0.94724 0.97713 0.98323 1.22640 0.96281 0.94791 0.86415 1.46065 1.73085 1.14125 1.03578 1.19281 1.37905 0.94928 0.83302 0.89999 1.25586 1.03345 0.94996 1.02134 1.70001 1.54450 0.98280 1.37254 0.85202 0.77957 0.76776 0.80110 1.21889 1.21906 1.18982 1.22006 0.97076 0.91946 0.85172 0.91775 0.93051 0.92170 0.93295 0.91576 0.90239 0.92392 0.90471 0.95058 0.87360 0.92895 0.93088 0.85333 0.85736 0.93965 0.74974 0.89654 0.93907 0.91560 0.86129 0.92595 0.93031 0.94515 0.96151 0.96023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -2.17 5.93 30.59 0.18 -1.98 16 3 C -0.11 -2.17 4.48 30.59 0.14 -2.04 16 4 C 0.05 1.18 4.62 86.30 0.40 1.58 16 5 N -0.54 -13.47 4.51 -874.41 -3.94 -17.41 16 6 C 0.02 0.31 4.94 86.31 0.43 0.74 16 7 C 0.05 0.98 7.01 72.01 0.50 1.48 16 8 O -0.39 -8.62 10.83 -148.98 -1.61 -10.23 16 9 C 0.08 1.84 6.16 72.01 0.44 2.29 16 10 C 0.04 1.04 2.36 44.18 0.10 1.14 16 11 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 12 C 0.52 16.11 6.85 87.66 0.60 16.71 16 13 O -0.56 -22.90 13.37 -3.04 -0.04 -22.94 16 14 N -0.71 -19.33 4.98 -442.55 -2.21 -21.54 16 15 C 0.18 5.95 2.43 44.99 0.11 6.06 16 16 H 0.04 1.94 7.36 -2.38 -0.02 1.92 16 17 C -0.15 -3.95 9.29 71.98 0.67 -3.28 16 18 C -0.12 -3.91 3.73 -10.37 -0.04 -3.95 16 19 C 0.12 4.71 8.08 83.18 0.67 5.38 16 20 N -0.64 -33.15 3.57 -737.85 -2.63 -35.78 16 21 C -0.23 -13.10 10.73 84.03 0.90 -12.20 16 22 H 0.08 4.56 7.84 -2.91 -0.02 4.54 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 24 N -0.95 -59.69 11.81 21.65 0.26 -59.43 16 25 Si 0.97 48.11 29.56 68.60 2.03 50.14 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 27 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 C 0.16 7.61 6.77 83.27 0.56 8.17 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.21 6.28 -2.39 -0.01 1.19 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 2.53 5.49 -2.39 -0.01 2.51 16 38 H 0.03 0.71 8.08 -2.39 -0.02 0.69 16 39 H 0.11 1.62 6.05 -2.39 -0.01 1.60 16 40 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.12 2.35 7.68 -2.39 -0.02 2.33 16 44 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.41 8.10 8.10 -92.71 -0.75 7.35 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 1.84 6.50 -2.39 -0.02 1.83 16 49 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 50 H 0.06 1.99 6.43 -2.39 -0.02 1.97 16 51 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.25 15.11 8.31 -92.70 -0.77 14.33 16 53 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.02 1.15 7.56 -2.39 -0.02 1.14 16 Total: -1.00 -78.04 414.66 -1.18 -79.22 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.12 Total: 22.82 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.85 Total: 15.15 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -8.52 Total: -134.16 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.65 Total: -33.17 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -78.04 -1.18 -79.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970215365.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.917 kcal (2) G-P(sol) polarization free energy of solvation -78.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds