Wall clock time and date at job start Tue Mar 31 2020 23:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 C 1.52999 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47412 * 179.97438 * 4 3 2 6 6 C 1.47017 * 111.00335 * 287.50879 * 5 4 3 7 7 C 1.53099 * 109.25970 * 177.60537 * 6 5 4 8 8 O 1.43013 * 109.25853 * 56.84815 * 7 6 5 9 9 C 1.43018 * 113.73973 * 301.32806 * 8 7 6 10 10 C 1.47019 * 111.00474 * 163.86957 * 5 4 3 11 11 H 1.09006 * 109.50026 * 62.46036 * 10 5 4 12 12 C 1.50696 * 109.50475 * 302.33275 * 10 5 4 13 13 O 1.21278 * 120.00078 * 332.30925 * 12 10 5 14 14 N 1.34779 * 119.99910 * 152.31101 * 12 10 5 15 15 C 1.46502 * 119.99924 * 179.97438 * 14 12 10 16 16 H 1.09001 * 109.47072 * 324.99690 * 15 14 12 17 17 C 1.52995 * 109.47007 * 85.00336 * 15 14 12 18 18 C 1.52998 * 109.46938 * 205.00260 * 15 14 12 19 19 C 1.53943 * 113.74333 * 162.21947 * 18 15 14 20 20 N 1.47803 * 86.04149 * 222.08219 * 19 18 15 21 21 C 1.36936 * 134.45861 * 204.64433 * 20 19 18 22 22 H 1.08008 * 120.00060 * 179.87019 * 21 20 19 23 23 C 1.38811 * 120.00348 * 359.86916 * 21 20 19 24 24 N 1.31624 * 119.99696 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00474 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47332 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47453 * 119.99511 * 25 23 21 28 28 H 1.48502 * 109.46986 * 240.00075 * 25 23 21 29 29 C 1.47585 * 91.05114 * 24.54929 * 20 19 18 30 30 H 1.08999 * 109.47468 * 299.99471 * 1 2 3 31 31 H 1.08996 * 109.47765 * 60.00175 * 1 2 3 32 32 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47468 * 240.00528 * 2 1 3 34 34 H 1.09005 * 109.47633 * 119.99759 * 2 1 3 35 35 H 1.09000 * 109.47036 * 60.00322 * 3 2 1 36 36 H 1.09004 * 109.47241 * 300.00071 * 3 2 1 37 37 H 1.09007 * 109.47482 * 60.00253 * 4 3 2 38 38 H 1.09004 * 109.47163 * 300.00189 * 4 3 2 39 39 H 1.09002 * 109.50501 * 57.66769 * 6 5 4 40 40 H 1.08994 * 109.54088 * 297.56046 * 6 5 4 41 41 H 1.09001 * 109.50197 * 296.91192 * 7 6 5 42 42 H 1.09005 * 109.50081 * 176.78550 * 7 6 5 43 43 H 1.08996 * 109.50492 * 178.60848 * 9 8 7 44 44 H 1.08998 * 109.50645 * 298.73709 * 9 8 7 45 45 H 0.97001 * 119.99623 * 0.02562 * 14 12 10 46 46 H 1.09002 * 109.46776 * 297.36115 * 17 15 14 47 47 H 1.08998 * 109.47034 * 57.35755 * 17 15 14 48 48 H 1.09003 * 109.47039 * 177.35915 * 17 15 14 49 49 H 1.09007 * 112.94461 * 293.81133 * 18 15 14 50 50 H 1.08997 * 113.77028 * 336.35504 * 19 18 15 51 51 H 1.09003 * 113.76696 * 107.74021 * 19 18 15 52 52 H 0.96998 * 119.99794 * 180.02562 * 24 23 21 53 53 H 1.09005 * 113.76960 * 221.15316 * 29 20 19 54 54 H 1.08995 * 113.76695 * 89.75286 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8275 0.0000 6 6 3.8464 3.4612 -1.3093 7 6 4.3149 4.9174 -1.2479 8 8 5.6866 4.9551 -0.8450 9 6 5.9302 4.3471 0.4264 10 6 5.4781 2.8851 0.3819 11 1 6.0746 2.3418 -0.3511 12 6 5.6589 2.2608 1.7415 13 8 4.7452 2.2691 2.5389 14 7 6.8360 1.6932 2.0713 15 6 7.0120 1.0868 3.3933 16 1 6.4547 1.6610 4.1335 17 6 6.4928 -0.3521 3.3674 18 6 8.4972 1.0866 3.7606 19 6 8.7640 0.8842 5.2632 20 7 9.7895 1.9387 5.1186 21 6 10.9312 2.2662 5.8002 22 1 11.5266 3.1096 5.4827 23 6 11.3234 1.5142 6.8991 24 7 10.5976 0.4867 7.2863 25 14 12.8803 1.9613 7.8292 26 1 13.5104 3.1487 7.1981 27 1 12.5415 2.2721 9.2412 28 1 13.8274 0.8182 7.7875 29 6 9.0906 2.4953 3.9440 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.9337 0.9286 -0.8892 38 1 3.9329 0.9288 0.8909 39 1 2.7862 3.4302 -1.5604 40 1 4.4163 2.9274 -2.0698 41 1 3.7084 5.4646 -0.5262 42 1 4.2118 5.3747 -2.2320 43 1 6.9953 4.3920 0.6532 44 1 5.3707 4.8778 1.1968 45 1 7.5669 1.6870 1.4336 46 1 5.4244 -0.3490 3.1517 47 1 7.0178 -0.9139 2.5949 48 1 6.6664 -0.8185 4.3372 49 1 9.0939 0.4393 3.1178 50 1 7.9271 1.1695 5.9004 51 1 9.1720 -0.0964 5.5087 52 1 10.8714 -0.0385 8.0544 53 1 9.7589 2.7988 3.1381 54 1 8.3498 3.2551 4.1929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970215366.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:31 Heat of formation + Delta-G solvation = -53.148770 kcal Electronic energy + Delta-G solvation = -30953.715911 eV Core-core repulsion = 26926.167611 eV Total energy + Delta-G solvation = -4027.548300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.67571 -40.31506 -39.29871 -37.54504 -36.14304 -35.20279 -34.16822 -32.94454 -31.39882 -30.53230 -29.32774 -27.44825 -26.66705 -26.01816 -25.46967 -23.63925 -23.20008 -21.96218 -21.71382 -21.30164 -20.50428 -18.79849 -18.36815 -17.74157 -17.43841 -16.98668 -16.82984 -16.52944 -16.05982 -15.98283 -15.74974 -15.51875 -15.36438 -15.10437 -14.99302 -14.68050 -14.44094 -14.15458 -13.85883 -13.81675 -13.41255 -13.30652 -13.27975 -13.07927 -12.97061 -12.93952 -12.70962 -12.47777 -12.35346 -12.20042 -11.99434 -11.97771 -11.89184 -11.80562 -11.64042 -11.57150 -11.34143 -11.21537 -10.94131 -10.88132 -10.54683 -10.04256 -9.40782 -8.92300 -7.91164 -5.24477 1.45109 1.46263 1.55787 1.56391 1.98987 2.46890 2.63824 2.92366 3.29435 3.38980 3.59692 3.70516 3.83602 3.90125 3.92505 3.97001 3.99428 4.11304 4.23879 4.26721 4.29094 4.31103 4.41721 4.45220 4.55188 4.56997 4.66495 4.67433 4.72055 4.77605 4.81042 4.83849 4.86829 4.91478 4.95556 4.97274 4.99565 5.07745 5.09023 5.24830 5.25344 5.29280 5.38863 5.45372 5.52489 5.55120 5.65400 5.80537 5.93906 5.96013 6.05553 6.60519 6.91893 7.27583 7.60516 8.56129 9.26099 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.002418 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.054744 B =11576.417727 C =13030.643770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.103 4.103 4 C 0.056 3.944 5 N -0.532 5.532 6 C 0.021 3.979 7 C 0.055 3.945 8 O -0.388 6.388 9 C 0.079 3.921 10 C 0.040 3.960 11 H 0.087 0.913 12 C 0.520 3.480 13 O -0.558 6.558 14 N -0.707 5.707 15 C 0.165 3.835 16 H 0.060 0.940 17 C -0.150 4.150 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.645 5.645 21 C -0.233 4.233 22 H 0.084 0.916 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.265 1.265 27 H -0.295 1.295 28 H -0.290 1.290 29 C 0.128 3.872 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.051 0.949 45 H 0.413 0.587 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.010 0.990 51 H 0.046 0.954 52 H 0.248 0.752 53 H 0.064 0.936 54 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.749 2.020 -23.552 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.141 4.141 4 C -0.071 4.071 5 N -0.258 5.258 6 C -0.106 4.106 7 C -0.021 4.021 8 O -0.307 6.307 9 C 0.001 3.999 10 C -0.072 4.072 11 H 0.104 0.896 12 C 0.306 3.694 13 O -0.435 6.435 14 N -0.359 5.359 15 C 0.059 3.941 16 H 0.078 0.922 17 C -0.209 4.209 18 C -0.128 4.128 19 C 0.044 3.956 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.102 0.898 23 C -0.263 4.263 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.222 1.222 28 H -0.217 1.217 29 C 0.003 3.997 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.250 0.750 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.123 0.877 50 H 0.028 0.972 51 H 0.064 0.936 52 H 0.057 0.943 53 H 0.082 0.918 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.273 2.374 -22.520 28.481 hybrid contribution 1.297 -0.494 0.747 1.576 sum -15.976 1.881 -21.774 27.071 Atomic orbital electron populations 1.21736 0.94978 1.02002 1.01939 1.21470 0.96633 0.96099 1.01819 1.21463 0.93311 0.97097 1.02179 1.22183 0.96892 0.87599 1.00419 1.61953 1.14903 1.19122 1.29860 1.22941 1.03463 0.95631 0.88606 1.22927 0.81760 0.95302 1.02112 1.88012 1.27615 1.78992 1.36036 1.22526 1.02400 0.88815 0.86143 1.22251 0.91793 0.99078 0.94077 0.89582 1.20508 0.82233 0.77657 0.89004 1.90710 1.41759 1.58765 1.52298 1.45996 1.14850 1.58134 1.16940 1.20717 0.94746 0.94367 0.84235 0.92178 1.22023 1.00674 0.95278 1.02879 1.23442 0.93788 0.97988 0.97574 1.22124 0.88685 0.93246 0.91507 1.46438 1.23094 1.33930 1.33664 1.19471 0.98216 1.10656 1.07809 0.89834 1.25646 1.02446 0.98439 0.99748 1.70008 1.40794 1.21136 1.28399 0.85007 0.78836 0.77608 0.77862 1.18880 1.22211 1.21671 1.22687 0.93398 0.94433 0.89166 0.93326 0.91911 0.92198 0.91237 0.93212 0.93044 0.90767 0.93642 0.92472 0.87581 0.93027 0.92570 0.85679 0.86427 0.93060 0.75008 0.93094 0.90777 0.91949 0.87651 0.97217 0.93603 0.94269 0.91827 0.94938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.82 5.93 30.59 0.18 -1.64 16 3 C -0.10 -1.72 5.27 30.59 0.16 -1.56 16 4 C 0.06 1.07 4.63 86.30 0.40 1.47 16 5 N -0.53 -10.39 4.23 -874.37 -3.69 -14.09 16 6 C 0.02 0.29 5.47 86.31 0.47 0.76 16 7 C 0.06 0.78 7.01 72.02 0.50 1.29 16 8 O -0.39 -7.38 10.83 -148.98 -1.61 -8.99 16 9 C 0.08 1.54 6.27 72.01 0.45 1.99 16 10 C 0.04 0.79 2.38 44.18 0.10 0.90 16 11 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 12 C 0.52 13.22 5.71 87.66 0.50 13.72 16 13 O -0.56 -19.04 15.24 -3.02 -0.05 -19.09 16 14 N -0.71 -16.21 4.95 -442.54 -2.19 -18.40 16 15 C 0.16 4.81 2.29 44.99 0.10 4.91 16 16 H 0.06 2.14 7.49 -2.39 -0.02 2.12 16 17 C -0.15 -3.99 9.45 71.98 0.68 -3.31 16 18 C -0.11 -3.67 3.35 -10.13 -0.03 -3.71 16 19 C 0.17 8.03 6.92 86.44 0.60 8.62 16 20 N -0.64 -33.07 3.70 -716.11 -2.65 -35.72 16 21 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.95 -58.12 11.39 21.65 0.25 -57.87 16 25 Si 0.98 46.09 29.55 68.60 2.03 48.11 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 C 0.13 4.92 8.38 86.49 0.73 5.64 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 0.99 6.75 -2.38 -0.02 0.98 16 37 H 0.05 0.73 8.04 -2.38 -0.02 0.71 16 38 H 0.06 1.39 5.96 -2.38 -0.01 1.38 16 39 H 0.11 1.14 6.65 -2.39 -0.02 1.12 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.41 7.08 8.60 -92.71 -0.80 6.28 16 46 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.06 1.77 8.02 -2.39 -0.02 1.76 16 49 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 50 H 0.01 0.50 8.04 -2.39 -0.02 0.48 16 51 H 0.05 2.41 7.17 -2.39 -0.02 2.39 16 52 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 53 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 54 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -73.00 421.59 -0.93 -73.94 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.06 Total: 20.08 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.93 Total: 12.03 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -8.29 Total: -126.08 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.66 Total: -28.08 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.00 -0.93 -73.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970215366.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.790 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds