Wall clock time and date at job start Tue Mar 31 2020 23:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00193 * 2 1 4 4 H 1.07995 * 119.99867 * 214.19906 * 3 2 1 5 5 C 1.38810 * 120.00142 * 34.20025 * 3 2 1 6 6 N 1.31620 * 119.99734 * 5.31571 * 5 3 2 7 7 Si 1.86793 * 120.00198 * 185.31741 * 5 3 2 8 8 H 1.48501 * 109.47329 * 89.99808 * 7 5 3 9 9 H 1.48500 * 109.47522 * 209.99908 * 7 5 3 10 10 H 1.48505 * 109.47064 * 329.99932 * 7 5 3 11 11 C 1.46504 * 119.99515 * 179.97438 * 2 1 3 12 12 H 1.09009 * 110.77714 * 183.24104 * 11 2 1 13 13 C 1.55157 * 110.72199 * 306.47765 * 11 2 1 14 14 C 1.54906 * 101.58181 * 153.86701 * 13 11 2 15 15 N 1.47424 * 104.83223 * 322.99370 * 14 13 11 16 16 C 1.34783 * 125.64830 * 204.16489 * 15 14 13 17 17 O 1.21282 * 119.99680 * 354.58757 * 16 15 14 18 18 C 1.50697 * 119.99993 * 174.58927 * 16 15 14 19 19 C 1.52999 * 109.46961 * 300.38446 * 18 16 15 20 20 C 1.52997 * 109.47042 * 60.38597 * 18 16 15 21 21 C 1.52996 * 109.46792 * 180.38096 * 18 16 15 22 22 N 1.46905 * 109.46894 * 184.86308 * 21 18 16 23 23 C 1.47022 * 110.99806 * 210.47091 * 22 21 18 24 24 C 1.53102 * 109.25618 * 177.60784 * 23 22 21 25 25 O 1.43013 * 109.25912 * 56.84481 * 24 23 22 26 26 C 1.43019 * 113.73813 * 301.32920 * 25 24 23 27 27 C 1.47005 * 111.00240 * 86.83376 * 22 21 18 28 28 C 1.47020 * 108.70315 * 24.12504 * 15 14 13 29 29 H 1.08998 * 109.47394 * 274.94857 * 1 2 3 30 30 H 1.09002 * 109.47062 * 34.94611 * 1 2 3 31 31 H 1.08999 * 109.47242 * 154.94473 * 1 2 3 32 32 H 0.97006 * 119.99960 * 179.97438 * 6 5 3 33 33 H 1.08999 * 111.00202 * 271.94272 * 13 11 2 34 34 H 1.08999 * 111.00445 * 35.79176 * 13 11 2 35 35 H 1.08995 * 110.36905 * 204.14942 * 14 13 11 36 36 H 1.09000 * 110.36513 * 81.83136 * 14 13 11 37 37 H 1.08991 * 109.47382 * 56.00291 * 19 18 16 38 38 H 1.09002 * 109.46610 * 175.99921 * 19 18 16 39 39 H 1.08999 * 109.46838 * 296.00071 * 19 18 16 40 40 H 1.08997 * 109.47599 * 68.85077 * 20 18 16 41 41 H 1.09004 * 109.47050 * 188.85976 * 20 18 16 42 42 H 1.09003 * 109.46838 * 308.85264 * 20 18 16 43 43 H 1.08996 * 109.47472 * 304.86434 * 21 18 16 44 44 H 1.09009 * 109.46999 * 64.86733 * 21 18 16 45 45 H 1.08998 * 109.50405 * 297.53935 * 23 22 21 46 46 H 1.08999 * 109.50759 * 57.67181 * 23 22 21 47 47 H 1.08994 * 109.50374 * 296.90941 * 24 23 22 48 48 H 1.09002 * 109.50206 * 176.78034 * 24 23 22 49 49 H 1.08998 * 109.50814 * 298.73442 * 26 25 24 50 50 H 1.08999 * 109.54091 * 178.62299 * 26 25 24 51 51 H 1.09004 * 109.50291 * 302.32827 * 27 22 21 52 52 H 1.09001 * 109.50967 * 62.41247 * 27 22 21 53 53 H 1.08999 * 109.88310 * 239.52347 * 28 15 14 54 54 H 1.09010 * 110.00756 * 118.43113 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0896 1.2667 -0.5257 5 6 1.6357 2.2841 0.6757 6 7 0.5455 2.1585 1.4024 7 14 2.4913 3.9401 0.5537 8 1 1.9368 4.7003 -0.5952 9 1 2.2696 4.7054 1.8068 10 1 3.9477 3.7312 0.3523 11 6 2.1974 -1.2688 0.0006 12 1 3.2720 -1.0950 0.0581 13 6 1.7247 -2.1751 1.1679 14 6 2.0497 -3.5861 0.6174 15 7 1.7500 -3.5072 -0.8239 16 6 1.4391 -4.5495 -1.6198 17 8 1.4839 -5.6802 -1.1834 18 6 1.0359 -4.3100 -3.0520 19 6 -0.2099 -3.4225 -3.0894 20 6 2.1793 -3.6156 -3.7944 21 6 0.7289 -5.6488 -3.7260 22 7 0.4492 -5.4268 -5.1510 23 6 -0.4990 -6.4266 -5.6637 24 6 -0.8077 -6.1231 -7.1323 25 8 0.4133 -6.1030 -7.8766 26 6 1.3596 -5.1401 -7.4046 27 6 1.6903 -5.4337 -5.9388 28 6 1.8454 -2.1030 -1.2491 29 1 -0.3634 0.0886 1.0238 30 1 -0.3633 0.8424 -0.5887 31 1 -0.3634 -0.9309 -0.4352 32 1 0.1865 2.9259 1.8749 33 1 2.2914 -1.9698 2.0760 34 1 0.6549 -2.0608 1.3427 35 1 1.4182 -4.3347 1.0958 36 1 3.1025 -3.8209 0.7736 37 1 -0.0135 -2.4976 -2.5475 38 1 -0.4598 -3.1909 -4.1248 39 1 -1.0437 -3.9470 -2.6228 40 1 3.0141 -4.3077 -3.9048 41 1 1.8349 -3.3015 -4.7797 42 1 2.5035 -2.7429 -3.2275 43 1 1.5873 -6.3126 -3.6233 44 1 -0.1408 -6.1035 -3.2515 45 1 -0.0593 -7.4206 -5.5821 46 1 -1.4201 -6.3864 -5.0823 47 1 -1.2963 -5.1518 -7.2082 48 1 -1.4655 -6.8945 -7.5327 49 1 0.9340 -4.1402 -7.4885 50 1 2.2694 -5.1999 -8.0019 51 1 2.3672 -4.6688 -5.5582 52 1 2.1654 -6.4116 -5.8610 53 1 0.8900 -1.7737 -1.6576 54 1 2.6274 -1.9932 -2.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971786594.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:01 Heat of formation + Delta-G solvation = -45.296782 kcal Electronic energy + Delta-G solvation = -31923.912218 eV Core-core repulsion = 27896.704405 eV Total energy + Delta-G solvation = -4027.207812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.78153 -40.46528 -39.04301 -37.58062 -36.44226 -35.04030 -33.30618 -32.21411 -31.34258 -29.56508 -28.94262 -28.37573 -27.95372 -26.13041 -25.16235 -24.78569 -24.22631 -22.01195 -21.33114 -21.00903 -19.90506 -18.86490 -17.72157 -17.49030 -17.31285 -17.15224 -16.73400 -16.44440 -16.27766 -16.07677 -15.71979 -15.50071 -15.09198 -15.01904 -14.89097 -14.52400 -14.37311 -14.27825 -13.99737 -13.88154 -13.46042 -13.27751 -13.14171 -12.87598 -12.81620 -12.73984 -12.64577 -12.54609 -12.36284 -12.31548 -12.17121 -12.10886 -12.04910 -11.89243 -11.77744 -11.62198 -11.39163 -11.33297 -10.78843 -10.61030 -10.46512 -9.59285 -9.40839 -8.61881 -7.80076 -5.41761 1.50616 1.51971 1.57334 1.60006 1.93110 2.52105 2.74643 2.99720 3.33181 3.41360 3.60480 3.74836 3.82073 3.88330 3.94950 3.98799 4.04371 4.15741 4.23231 4.25141 4.29434 4.30130 4.37560 4.43933 4.57427 4.58463 4.62924 4.70673 4.73966 4.77712 4.79939 4.82769 4.84420 4.91386 4.92567 4.95476 5.04694 5.05292 5.09395 5.19367 5.21306 5.33443 5.35983 5.40711 5.52327 5.70833 5.75329 5.88831 5.96372 6.20962 6.40605 6.54253 7.09516 7.19431 7.85561 8.35751 9.20599 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.002710 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.856346 B =10331.162877 C =11239.470892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.269 4.269 4 H 0.071 0.929 5 C -0.039 4.039 6 N -0.931 5.931 7 Si 0.965 3.035 8 H -0.286 1.286 9 H -0.298 1.298 10 H -0.266 1.266 11 C 0.164 3.836 12 H 0.080 0.920 13 C -0.140 4.140 14 C 0.113 3.887 15 N -0.607 5.607 16 C 0.533 3.467 17 O -0.588 6.588 18 C -0.059 4.059 19 C -0.134 4.134 20 C -0.155 4.155 21 C 0.091 3.909 22 N -0.529 5.529 23 C 0.018 3.982 24 C 0.065 3.935 25 O -0.407 6.407 26 C 0.063 3.937 27 C -0.002 4.002 28 C 0.079 3.921 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.029 0.971 32 H 0.248 0.752 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.112 0.888 49 H 0.065 0.935 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.031 0.969 53 H 0.081 0.919 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -14.508 -15.172 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.318 5.318 3 C -0.400 4.400 4 H 0.089 0.911 5 C -0.236 4.236 6 N -0.576 5.576 7 Si 0.793 3.207 8 H -0.212 1.212 9 H -0.225 1.225 10 H -0.191 1.191 11 C 0.055 3.945 12 H 0.098 0.902 13 C -0.180 4.180 14 C -0.010 4.010 15 N -0.339 5.339 16 C 0.323 3.677 17 O -0.469 6.469 18 C -0.063 4.063 19 C -0.191 4.191 20 C -0.211 4.211 21 C -0.038 4.038 22 N -0.254 5.254 23 C -0.110 4.110 24 C -0.012 4.012 25 O -0.326 6.326 26 C -0.013 4.013 27 C -0.130 4.130 28 C -0.045 4.045 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.052 0.948 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.130 0.870 49 H 0.083 0.917 50 H 0.129 0.871 51 H 0.130 0.870 52 H 0.049 0.951 53 H 0.099 0.901 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.106 -14.675 -15.114 21.067 hybrid contribution 0.421 0.321 1.054 1.179 sum 0.527 -14.354 -14.060 20.100 Atomic orbital electron populations 1.20505 0.83276 0.95629 0.97653 1.43877 1.01548 1.00710 1.85626 1.19452 1.05698 0.88885 1.25918 0.91098 1.26024 0.98497 1.02472 0.96582 1.70160 1.23706 1.30071 1.33672 0.85318 0.78953 0.80046 0.76378 1.21244 1.22527 1.19071 1.21525 0.96234 0.85019 0.91680 0.90180 1.23185 1.01507 0.93611 0.99693 1.22178 1.00926 0.97451 0.80441 1.48481 1.67725 1.07738 1.10006 1.20796 0.75581 0.82921 0.88411 1.90638 1.55819 1.23398 1.77058 1.20544 0.98661 0.97870 0.89214 1.21910 0.94592 0.98560 1.04044 1.22375 0.96095 1.00803 1.01831 1.21715 1.00415 0.93935 0.87726 1.62050 1.12737 1.48935 1.01685 1.22869 0.97338 0.93244 0.97588 1.22762 0.86295 1.02930 0.89165 1.87950 1.27746 1.60132 1.56781 1.22785 0.93358 0.92342 0.92848 1.23366 0.92487 1.02005 0.95115 1.23176 1.02765 0.79446 0.99090 0.97476 0.96930 0.95289 0.94247 0.90351 0.92313 0.91440 0.90554 0.92061 0.89271 0.93401 0.92247 0.88702 0.91014 0.94664 0.91421 0.94800 0.88757 0.91764 0.86984 0.91665 0.87076 0.86987 0.95065 0.90097 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.96 7.51 127.77 0.96 8.92 16 2 N -0.60 -27.04 2.89 -696.16 -2.01 -29.06 16 3 C -0.27 -13.61 9.50 84.03 0.80 -12.82 16 4 H 0.07 3.45 7.83 -2.91 -0.02 3.42 16 5 C -0.04 -2.07 5.27 84.86 0.45 -1.62 16 6 N -0.93 -52.60 11.03 21.65 0.24 -52.36 16 7 Si 0.96 42.60 29.56 68.60 2.03 44.62 16 8 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 9 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 C 0.16 5.91 3.43 46.18 0.16 6.07 16 12 H 0.08 2.87 7.95 -2.38 -0.02 2.85 16 13 C -0.14 -4.69 6.62 31.99 0.21 -4.47 16 14 C 0.11 3.34 6.89 86.85 0.60 3.94 16 15 N -0.61 -18.00 3.31 -811.81 -2.69 -20.69 16 16 C 0.53 16.04 6.58 87.66 0.58 16.62 16 17 O -0.59 -21.38 16.22 -3.04 -0.05 -21.43 16 18 C -0.06 -1.38 0.57 -52.93 -0.03 -1.41 16 19 C -0.13 -3.03 8.18 71.98 0.59 -2.44 16 20 C -0.15 -3.02 6.62 71.98 0.48 -2.54 16 21 C 0.09 2.03 3.59 86.30 0.31 2.34 16 22 N -0.53 -9.64 3.90 -895.20 -3.49 -13.13 16 23 C 0.02 0.29 5.52 86.31 0.48 0.76 16 24 C 0.07 0.95 7.01 72.02 0.50 1.46 16 25 O -0.41 -7.55 10.83 -148.98 -1.61 -9.16 16 26 C 0.06 0.94 7.01 72.01 0.50 1.45 16 27 C 0.00 -0.04 4.90 86.32 0.42 0.39 16 28 C 0.08 2.35 4.93 86.73 0.43 2.77 16 29 H 0.01 0.36 7.17 -2.39 -0.02 0.34 16 30 H 0.01 0.60 7.86 -2.39 -0.02 0.58 16 31 H 0.03 1.13 6.59 -2.39 -0.02 1.12 16 32 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.17 7.08 -2.39 -0.02 2.15 16 35 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.54 4.52 -2.39 -0.01 1.53 16 38 H 0.09 1.79 7.86 -2.39 -0.02 1.77 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.11 7.31 -2.39 -0.02 1.10 16 41 H 0.09 1.57 6.36 -2.38 -0.02 1.56 16 42 H 0.07 1.50 4.12 -2.39 -0.01 1.49 16 43 H 0.04 0.89 7.62 -2.39 -0.02 0.87 16 44 H 0.07 1.63 7.69 -2.38 -0.02 1.61 16 45 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.09 1.38 8.00 -2.39 -0.02 1.36 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.11 1.66 4.02 -2.38 -0.01 1.65 16 52 H 0.03 0.58 8.11 -2.39 -0.02 0.56 16 53 H 0.08 2.51 3.47 -2.39 -0.01 2.50 16 54 H 0.09 2.36 5.48 -2.38 -0.01 2.34 16 Total: -1.00 -63.11 393.72 0.73 -62.37 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.89 Total: 19.41 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.43 Total: 19.42 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -7.95 Total: -115.23 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.66 Total: -30.59 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -63.11 0.73 -62.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971786594.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.077 kcal (2) G-P(sol) polarization free energy of solvation -63.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds