Wall clock time and date at job start Tue Mar 31 2020 23:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36946 * 120.00189 * 2 1 4 4 H 1.07999 * 119.99613 * 128.87865 * 3 2 1 5 5 C 1.38808 * 119.99479 * 308.88273 * 3 2 1 6 6 N 1.31618 * 119.99575 * 181.93822 * 5 3 2 7 7 Si 1.86793 * 120.00404 * 1.93228 * 5 3 2 8 8 H 1.48508 * 109.46992 * 94.10537 * 7 5 3 9 9 H 1.48504 * 109.47430 * 214.10104 * 7 5 3 10 10 H 1.48496 * 109.47351 * 334.10586 * 7 5 3 11 11 C 1.46504 * 120.00013 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88683 * 182.42502 * 11 2 1 13 13 C 1.55162 * 110.99996 * 58.55040 * 11 2 1 14 14 C 1.54327 * 102.93612 * 206.38581 * 13 11 2 15 15 N 1.47018 * 107.27335 * 22.19202 * 14 13 11 16 16 C 1.34777 * 125.64267 * 181.01493 * 15 14 13 17 17 O 1.21280 * 119.99507 * 173.67469 * 16 15 14 18 18 C 1.50696 * 120.00465 * 353.67267 * 16 15 14 19 19 C 1.53004 * 109.47320 * 182.06131 * 18 16 15 20 20 C 1.53000 * 109.46967 * 302.05727 * 18 16 15 21 21 C 1.52996 * 109.47096 * 62.05839 * 18 16 15 22 22 N 1.46898 * 109.47001 * 65.76613 * 21 18 16 23 23 C 1.47009 * 111.00311 * 282.92262 * 22 21 18 24 24 C 1.53101 * 109.26161 * 177.60805 * 23 22 21 25 25 O 1.43014 * 109.25656 * 56.84772 * 24 23 22 26 26 C 1.43012 * 113.74023 * 301.33019 * 25 24 23 27 27 C 1.47014 * 110.99879 * 159.28479 * 22 21 18 28 28 C 1.47420 * 108.70648 * 1.05997 * 15 14 13 29 29 H 1.09003 * 109.46788 * 274.33470 * 1 2 3 30 30 H 1.08997 * 109.46702 * 34.33267 * 1 2 3 31 31 H 1.08993 * 109.46903 * 154.33797 * 1 2 3 32 32 H 0.97001 * 119.99885 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.72121 * 88.02091 * 13 11 2 34 34 H 1.09000 * 110.86786 * 324.81821 * 13 11 2 35 35 H 1.08999 * 109.88016 * 141.61253 * 14 13 11 36 36 H 1.09007 * 109.87851 * 262.76908 * 14 13 11 37 37 H 1.09000 * 109.47106 * 64.97711 * 19 18 16 38 38 H 1.08998 * 109.46855 * 184.97876 * 19 18 16 39 39 H 1.09000 * 109.46866 * 304.97895 * 19 18 16 40 40 H 1.09006 * 109.47056 * 56.99907 * 20 18 16 41 41 H 1.09001 * 109.47133 * 176.99984 * 20 18 16 42 42 H 1.08993 * 109.47831 * 297.00008 * 20 18 16 43 43 H 1.09001 * 109.46911 * 185.76328 * 21 18 16 44 44 H 1.09004 * 109.47446 * 305.76639 * 21 18 16 45 45 H 1.09002 * 109.50594 * 297.54342 * 23 22 21 46 46 H 1.08996 * 109.50758 * 57.67262 * 23 22 21 47 47 H 1.09001 * 109.50260 * 296.91364 * 24 23 22 48 48 H 1.09000 * 109.54093 * 176.80496 * 24 23 22 49 49 H 1.09003 * 109.51036 * 298.73829 * 26 25 24 50 50 H 1.09005 * 109.54757 * 178.62649 * 26 25 24 51 51 H 1.08997 * 109.50892 * 302.33041 * 27 22 21 52 52 H 1.09000 * 109.50797 * 62.45979 * 27 22 21 53 53 H 1.08993 * 110.36880 * 217.03643 * 28 15 14 54 54 H 1.08996 * 110.45831 * 94.75434 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 2.9282 1.3600 0.7281 5 6 1.8432 2.1643 -0.9358 6 7 2.5269 3.2887 -0.9603 7 14 0.4607 1.8849 -2.1605 8 1 -0.7961 2.4724 -1.6306 9 1 0.8043 2.5335 -3.4514 10 1 0.2746 0.4271 -2.3729 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0966 0.0436 13 6 1.8210 -2.1288 -1.2348 14 6 2.0905 -3.5685 -0.7486 15 7 2.0434 -3.5490 0.7207 16 6 2.2484 -4.6093 1.5271 17 8 2.2986 -4.4560 2.7291 18 6 2.4151 -5.9851 0.9353 19 6 2.5814 -7.0079 2.0611 20 6 1.1786 -6.3366 0.1056 21 6 3.6544 -6.0078 0.0385 22 7 4.8563 -5.8067 0.8589 23 6 5.0103 -4.3927 1.2301 24 6 6.2382 -4.2380 2.1315 25 8 7.3889 -4.7480 1.4526 26 6 7.2734 -6.1231 1.0769 27 6 6.0560 -6.2968 0.1648 28 6 1.7337 -2.1782 1.1657 29 1 -0.3633 0.0777 1.0248 30 1 -0.3632 0.8486 -0.5796 31 1 -0.3633 -0.9263 -0.4450 32 1 2.3125 3.9725 -1.6140 33 1 2.4581 -1.8830 -2.0845 34 1 0.7699 -1.9990 -1.4924 35 1 1.3238 -4.2399 -1.1353 36 1 3.0751 -3.8947 -1.0838 37 1 1.6638 -7.0551 2.6475 38 1 2.7901 -7.9884 1.6332 39 1 3.4088 -6.7086 2.7045 40 1 1.0295 -5.5786 -0.6634 41 1 1.3217 -7.3090 -0.3657 42 1 0.3037 -6.3727 0.7546 43 1 3.7179 -6.9702 -0.4692 44 1 3.5821 -5.2106 -0.7015 45 1 5.1417 -3.7923 0.3299 46 1 4.1217 -4.0579 1.7651 47 1 6.0839 -4.7954 3.0554 48 1 6.3898 -3.1838 2.3634 49 1 7.1492 -6.7353 1.9701 50 1 8.1734 -6.4328 0.5455 51 1 5.9306 -7.3520 -0.0779 52 1 6.2042 -5.7269 -0.7524 53 1 2.2857 -1.9407 2.0750 54 1 0.6626 -2.0645 1.3323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971786595.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:04 Heat of formation + Delta-G solvation = -41.722921 kcal Electronic energy + Delta-G solvation = -32942.790576 eV Core-core repulsion = 28915.737738 eV Total energy + Delta-G solvation = -4027.052838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.08337 -40.26852 -39.17520 -37.45904 -36.63974 -35.16090 -33.83267 -32.18416 -31.62972 -29.93446 -29.12065 -28.13463 -27.89512 -26.12624 -25.20770 -24.99237 -24.21598 -22.30436 -21.42824 -21.02446 -19.87543 -19.08994 -18.03482 -17.79078 -17.35884 -17.13593 -16.95644 -16.54376 -16.43293 -16.04024 -15.75332 -15.43606 -15.24566 -15.10589 -14.93982 -14.75087 -14.54662 -14.31279 -14.13925 -13.89851 -13.48316 -13.44588 -13.26715 -13.17996 -13.02782 -12.84548 -12.71180 -12.53780 -12.51296 -12.36334 -12.34542 -12.17952 -12.05193 -11.96168 -11.78692 -11.47282 -11.43977 -11.24222 -10.77535 -10.69010 -10.63429 -9.68790 -9.32794 -8.64296 -8.16293 -5.88723 1.34157 1.41014 1.53950 1.61671 1.92792 2.39805 2.67373 2.90751 3.08631 3.23968 3.38021 3.72377 3.77042 3.79166 3.91415 3.94774 4.01419 4.06910 4.10991 4.16422 4.22517 4.25971 4.33131 4.39689 4.46764 4.51470 4.57240 4.61971 4.68081 4.69929 4.70493 4.75344 4.78363 4.80611 4.88371 4.94364 4.97107 4.99468 5.01638 5.06990 5.11335 5.19241 5.23961 5.32682 5.33826 5.53227 5.85186 5.95280 5.97490 6.13472 6.19602 6.54930 6.95850 7.14917 7.50654 7.99030 8.95311 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003620 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.940879 B = 7733.747116 C = 8737.460306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.610 5.610 3 C -0.275 4.275 4 H 0.028 0.972 5 C -0.015 4.015 6 N -0.955 5.955 7 Si 0.973 3.027 8 H -0.282 1.282 9 H -0.312 1.312 10 H -0.235 1.235 11 C 0.171 3.829 12 H 0.062 0.938 13 C -0.148 4.148 14 C 0.096 3.904 15 N -0.615 5.615 16 C 0.538 3.462 17 O -0.585 6.585 18 C -0.068 4.068 19 C -0.107 4.107 20 C -0.149 4.149 21 C 0.051 3.949 22 N -0.536 5.536 23 C 0.010 3.990 24 C 0.069 3.931 25 O -0.405 6.405 26 C 0.056 3.944 27 C 0.020 3.980 28 C 0.100 3.900 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.118 0.882 51 H 0.116 0.884 52 H 0.040 0.960 53 H 0.046 0.954 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -27.416 -3.403 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.334 5.334 3 C -0.405 4.405 4 H 0.045 0.955 5 C -0.212 4.212 6 N -0.597 5.597 7 Si 0.801 3.199 8 H -0.209 1.209 9 H -0.241 1.241 10 H -0.158 1.158 11 C 0.063 3.937 12 H 0.081 0.919 13 C -0.187 4.187 14 C -0.025 4.025 15 N -0.349 5.349 16 C 0.330 3.670 17 O -0.466 6.466 18 C -0.072 4.072 19 C -0.165 4.165 20 C -0.206 4.206 21 C -0.077 4.077 22 N -0.260 5.260 23 C -0.119 4.119 24 C -0.008 4.008 25 O -0.324 6.324 26 C -0.021 4.021 27 C -0.107 4.107 28 C -0.025 4.025 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.136 0.864 51 H 0.134 0.866 52 H 0.058 0.942 53 H 0.064 0.936 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.938 -27.406 -2.395 27.527 hybrid contribution -0.518 1.656 -0.534 1.815 sum 0.420 -25.751 -2.929 25.920 Atomic orbital electron populations 1.21420 0.84002 0.99349 0.98523 1.43846 1.01103 1.01153 1.87271 1.18502 1.17513 0.93269 1.11177 0.95476 1.26497 1.00388 0.95955 0.98358 1.69941 1.42797 1.08685 1.38279 0.85449 0.78048 0.79689 0.76721 1.20921 1.24101 1.15820 1.21570 0.95373 0.84279 0.92521 0.91942 1.23161 1.03084 0.93511 0.98971 1.22684 1.03112 0.97894 0.78813 1.48546 1.69927 1.08241 1.08149 1.20873 0.73846 0.86435 0.85830 1.90686 1.52867 1.86217 1.16787 1.20855 0.97869 0.90301 0.98131 1.21436 1.01126 0.97497 0.96441 1.22105 0.94494 1.04242 0.99767 1.22607 0.87283 1.04300 0.93483 1.62174 1.03497 1.16705 1.43671 1.22972 0.99964 0.89763 0.99159 1.22533 0.84387 0.99585 0.94312 1.87966 1.39239 1.27872 1.77319 1.22905 0.98741 0.81838 0.98576 1.22874 0.89743 1.02524 0.95571 1.22505 1.00010 0.81737 0.98261 0.96169 0.96152 0.91016 0.92588 0.89924 0.90089 0.87561 0.89840 0.94046 0.89756 0.93252 0.90474 0.88346 0.92567 0.86381 0.92307 0.95094 0.90081 0.92628 0.89221 0.92148 0.86394 0.86641 0.94198 0.93568 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.34 7.77 127.77 0.99 5.33 16 2 N -0.61 -27.53 2.45 -695.00 -1.71 -29.23 16 3 C -0.27 -15.49 9.90 84.03 0.83 -14.66 16 4 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 5 C -0.01 -0.85 5.50 84.86 0.47 -0.38 16 6 N -0.95 -59.38 13.97 21.65 0.30 -59.08 16 7 Si 0.97 44.61 24.74 68.60 1.70 46.31 16 8 H -0.28 -12.62 7.08 99.48 0.70 -11.91 16 9 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 10 H -0.24 -9.45 6.38 99.48 0.63 -8.82 16 11 C 0.17 6.34 3.54 46.38 0.16 6.50 16 12 H 0.06 2.59 7.96 -2.39 -0.02 2.57 16 13 C -0.15 -4.08 6.49 31.79 0.21 -3.88 16 14 C 0.10 2.02 5.42 86.73 0.47 2.49 16 15 N -0.62 -16.80 3.01 -811.82 -2.44 -19.24 16 16 C 0.54 15.08 3.73 87.66 0.33 15.40 16 17 O -0.58 -21.64 15.26 -3.03 -0.05 -21.69 16 18 C -0.07 -1.27 0.58 -52.93 -0.03 -1.30 16 19 C -0.11 -2.09 7.53 71.98 0.54 -1.55 16 20 C -0.15 -1.92 8.33 71.98 0.60 -1.32 16 21 C 0.05 0.78 4.09 86.30 0.35 1.13 16 22 N -0.54 -10.51 3.74 -895.22 -3.35 -13.86 16 23 C 0.01 0.26 5.13 86.32 0.44 0.70 16 24 C 0.07 1.82 7.01 72.02 0.50 2.33 16 25 O -0.40 -10.30 10.83 -148.98 -1.61 -11.91 16 26 C 0.06 0.96 7.01 72.02 0.50 1.46 16 27 C 0.02 0.31 5.59 86.32 0.48 0.79 16 28 C 0.10 3.42 6.51 86.86 0.57 3.99 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.85 3.12 -2.39 -0.01 0.85 16 31 H 0.07 2.29 6.35 -2.39 -0.02 2.28 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.18 6.37 -2.39 -0.02 2.17 16 35 H 0.11 1.59 5.18 -2.39 -0.01 1.58 16 36 H 0.08 1.56 5.45 -2.38 -0.01 1.55 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.22 7.42 -2.39 -0.02 1.21 16 40 H 0.08 0.91 4.43 -2.38 -0.01 0.90 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.12 1.09 7.84 -2.39 -0.02 1.07 16 44 H 0.06 0.92 4.10 -2.38 -0.01 0.92 16 45 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 46 H 0.08 2.55 3.80 -2.39 -0.01 2.54 16 47 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.12 1.07 8.01 -2.39 -0.02 1.05 16 52 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.05 1.82 7.98 -2.39 -0.02 1.80 16 54 H 0.07 2.24 7.07 -2.39 -0.02 2.22 16 Total: -1.00 -73.91 387.79 1.08 -72.83 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.82 Total: 18.84 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 7.42 Total: 17.04 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.19 Total: -121.41 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.66 Total: -33.60 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.70 Total: 46.31 kcal Total: -73.91 1.08 -72.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971786595.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.105 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds