Wall clock time and date at job start Tue Mar 31 2020 23:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46737 * 2 1 4 4 C 1.52999 * 109.47085 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47167 * 180.02562 * 4 3 2 6 6 C 1.47015 * 110.99918 * 289.89397 * 5 4 3 7 7 C 1.53105 * 109.25580 * 177.60450 * 6 5 4 8 8 O 1.43017 * 109.25322 * 56.85722 * 7 6 5 9 9 C 1.43016 * 113.73881 * 301.32028 * 8 7 6 10 10 C 1.47021 * 111.00089 * 166.26277 * 5 4 3 11 11 H 1.09005 * 109.54195 * 62.43680 * 10 5 4 12 12 C 1.50698 * 109.50684 * 302.32857 * 10 5 4 13 13 O 1.21286 * 119.99611 * 328.00834 * 12 10 5 14 14 N 1.34776 * 120.00354 * 148.01157 * 12 10 5 15 15 C 1.47026 * 125.64401 * 355.13585 * 14 12 10 16 16 C 1.54326 * 107.26666 * 181.02534 * 15 14 12 17 17 C 1.55152 * 102.94347 * 22.19431 * 16 15 14 18 18 H 1.08994 * 111.00547 * 82.57099 * 17 16 15 19 19 N 1.46503 * 111.03664 * 206.40997 * 17 16 15 20 20 C 1.46500 * 120.00060 * 55.39302 * 19 17 16 21 21 C 1.36936 * 120.00051 * 235.39461 * 19 17 16 22 22 H 1.07999 * 119.99639 * 19.84806 * 21 19 17 23 23 C 1.38814 * 120.00123 * 199.84549 * 21 19 17 24 24 N 1.31616 * 119.99833 * 19.47338 * 23 21 19 25 25 Si 1.86793 * 119.99954 * 199.47526 * 23 21 19 26 26 H 1.48504 * 109.47329 * 94.98311 * 25 23 21 27 27 H 1.48506 * 109.47106 * 214.98376 * 25 23 21 28 28 H 1.48502 * 109.47304 * 334.98176 * 25 23 21 29 29 C 1.47416 * 125.65193 * 175.09796 * 14 12 10 30 30 H 1.08999 * 109.47397 * 299.99834 * 1 2 3 31 31 H 1.08996 * 109.47514 * 60.00502 * 1 2 3 32 32 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47397 * 240.00166 * 2 1 3 34 34 H 1.09003 * 109.47222 * 119.99334 * 2 1 3 35 35 H 1.08999 * 109.47042 * 59.99948 * 3 2 1 36 36 H 1.08997 * 109.47219 * 300.00104 * 3 2 1 37 37 H 1.08999 * 109.47135 * 60.00113 * 4 3 2 38 38 H 1.09005 * 109.46973 * 300.00020 * 4 3 2 39 39 H 1.09004 * 109.50230 * 57.67899 * 6 5 4 40 40 H 1.08999 * 109.50883 * 297.54286 * 6 5 4 41 41 H 1.08988 * 109.51013 * 296.91713 * 7 6 5 42 42 H 1.09003 * 109.50037 * 176.78249 * 7 6 5 43 43 H 1.08996 * 109.50824 * 298.74466 * 9 8 7 44 44 H 1.08995 * 109.50635 * 178.60753 * 9 8 7 45 45 H 1.08996 * 109.88171 * 300.44182 * 15 14 12 46 46 H 1.08998 * 109.88141 * 61.45369 * 15 14 12 47 47 H 1.09005 * 110.72018 * 263.82836 * 16 15 14 48 48 H 1.09003 * 110.71883 * 140.56134 * 16 15 14 49 49 H 1.08992 * 109.47159 * 94.55688 * 20 19 17 50 50 H 1.09003 * 109.47166 * 214.56133 * 20 19 17 51 51 H 1.09004 * 109.47186 * 334.56001 * 20 19 17 52 52 H 0.97003 * 120.00218 * 179.97438 * 24 23 21 53 53 H 1.09000 * 110.36742 * 37.06587 * 29 14 12 54 54 H 1.09008 * 110.36828 * 274.74496 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0595 2.8276 0.0013 6 6 3.7952 3.4804 -1.2893 7 6 4.2661 4.9358 -1.2247 8 8 5.6527 4.9678 -0.8756 9 6 5.9459 4.3413 0.3761 10 6 5.4920 2.8799 0.3278 11 1 6.0596 2.3475 -0.4354 12 6 5.7260 2.2357 1.6699 13 8 4.8735 2.2999 2.5302 14 7 6.8826 1.5883 1.9142 15 6 7.9533 1.3481 0.9356 16 6 9.0620 0.5521 1.6559 17 6 8.3057 -0.1014 2.8425 18 1 7.7986 -1.0135 2.5279 19 7 9.2128 -0.3676 3.9617 20 6 10.0098 0.7206 4.5334 21 6 9.3158 -1.6336 4.4734 22 1 8.9997 -2.4816 3.8840 23 6 9.8266 -1.8270 5.7496 24 7 9.8536 -0.8280 6.6059 25 14 10.4756 -3.5052 6.2514 26 1 11.9448 -3.5512 6.0402 27 1 10.1739 -3.7439 7.6857 28 1 9.8239 -4.5547 5.4272 29 6 7.2840 1.0044 3.2069 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 1.6765 1.9564 0.8900 36 1 1.6765 1.9564 -0.8899 37 1 3.9336 0.9287 -0.8891 38 1 3.9329 0.9289 0.8909 39 1 2.7259 3.4528 -1.4988 40 1 4.3352 2.9578 -2.0788 41 1 3.6887 5.4721 -0.4718 42 1 4.1246 5.4075 -2.1971 43 1 5.4173 4.8603 1.1756 44 1 7.0191 4.3831 0.5614 45 1 7.5661 0.7690 0.0973 46 1 8.3488 2.2988 0.5781 47 1 9.8435 1.2203 2.0177 48 1 9.4791 -0.2101 0.9977 49 1 9.4852 1.1440 5.3898 50 1 10.9765 0.3328 4.8549 51 1 10.1609 1.4945 3.7808 52 1 10.2102 -0.9631 7.4979 53 1 6.4205 0.5716 3.7121 54 1 7.7525 1.7614 3.8360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972005754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:46 Heat of formation + Delta-G solvation = -66.782958 kcal Electronic energy + Delta-G solvation = -31421.758135 eV Core-core repulsion = 27393.618612 eV Total energy + Delta-G solvation = -4028.139523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.77889 -40.19739 -38.79844 -37.55627 -36.57506 -35.24645 -33.64384 -32.58153 -31.21775 -30.62883 -29.48138 -28.07567 -27.46627 -26.25057 -24.84814 -23.81975 -23.68320 -22.07314 -21.74950 -20.95416 -20.09768 -18.96858 -18.46990 -17.84077 -17.48649 -17.25707 -16.60835 -16.50707 -16.31954 -16.02314 -15.60006 -15.46400 -15.13982 -15.06290 -14.90194 -14.60355 -14.45022 -14.26881 -14.20744 -13.86911 -13.60404 -13.48540 -13.32250 -13.17203 -12.93627 -12.81507 -12.56420 -12.47261 -12.40750 -12.24391 -12.18951 -12.07079 -12.00988 -11.91943 -11.82366 -11.66635 -11.43766 -11.38121 -11.04572 -10.64889 -10.63635 -9.72057 -9.45795 -8.85644 -7.87170 -5.31846 1.42459 1.46944 1.47941 1.57156 1.75943 2.49911 2.58805 2.83809 3.23585 3.40525 3.52089 3.65668 3.80522 3.85834 3.91246 3.92649 4.02263 4.07740 4.16235 4.20087 4.24948 4.27840 4.30708 4.37004 4.42040 4.50259 4.58486 4.64092 4.66185 4.69214 4.76530 4.78034 4.83427 4.89125 4.94153 4.96582 4.99273 5.03683 5.15576 5.18389 5.22664 5.28076 5.35132 5.40556 5.42071 5.62452 5.68436 5.74545 5.91374 6.01338 6.27629 6.49039 7.06089 7.10713 7.82243 8.25145 9.16466 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002807 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.798737 B = 9971.497106 C =11478.709201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.057 3.943 5 N -0.534 5.534 6 C 0.020 3.980 7 C 0.056 3.944 8 O -0.384 6.384 9 C 0.083 3.917 10 C 0.048 3.952 11 H 0.086 0.914 12 C 0.529 3.471 13 O -0.568 6.568 14 N -0.613 5.613 15 C 0.105 3.895 16 C -0.137 4.137 17 C 0.166 3.834 18 H 0.071 0.929 19 N -0.599 5.599 20 C 0.174 3.826 21 C -0.268 4.268 22 H 0.075 0.925 23 C -0.051 4.051 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.285 1.285 27 H -0.299 1.299 28 H -0.267 1.267 29 C 0.099 3.901 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.130 0.870 43 H 0.052 0.948 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.096 0.904 49 H -0.003 1.003 50 H 0.019 0.981 51 H 0.041 0.959 52 H 0.249 0.751 53 H 0.039 0.961 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 8.852 -22.541 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.071 4.071 5 N -0.261 5.261 6 C -0.107 4.107 7 C -0.021 4.021 8 O -0.302 6.302 9 C 0.005 3.995 10 C -0.065 4.065 11 H 0.103 0.897 12 C 0.317 3.683 13 O -0.446 6.446 14 N -0.347 5.347 15 C -0.017 4.017 16 C -0.177 4.177 17 C 0.057 3.943 18 H 0.090 0.910 19 N -0.320 5.320 20 C 0.029 3.971 21 C -0.398 4.398 22 H 0.093 0.907 23 C -0.247 4.247 24 N -0.581 5.581 25 Si 0.796 3.204 26 H -0.212 1.212 27 H -0.226 1.226 28 H -0.191 1.191 29 C -0.026 4.026 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.148 0.852 43 H 0.070 0.930 44 H 0.134 0.866 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.016 0.984 50 H 0.038 0.962 51 H 0.060 0.940 52 H 0.058 0.942 53 H 0.057 0.943 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.105 9.268 -21.696 26.517 hybrid contribution 0.575 -1.510 1.067 1.936 sum -11.531 7.758 -20.630 24.874 Atomic orbital electron populations 1.21728 0.94653 1.02060 1.02085 1.21485 0.96904 0.96115 1.01698 1.21479 0.92884 0.97177 1.02462 1.22160 0.97188 0.87685 1.00024 1.61969 1.13159 1.18409 1.32532 1.22984 1.03587 0.95580 0.88565 1.22957 0.81207 0.95167 1.02752 1.88009 1.26689 1.77922 1.37626 1.22439 1.01962 0.88210 0.86856 1.22220 0.91601 0.99117 0.93518 0.89681 1.20425 0.80027 0.77997 0.89808 1.90699 1.44272 1.60811 1.48794 1.48625 1.18120 1.55004 1.12986 1.22271 0.86820 1.01313 0.91333 1.23054 0.97415 0.99980 0.97238 1.21590 0.89321 0.94903 0.88473 0.91041 1.44086 1.44800 1.06543 1.36556 1.20530 0.93647 0.88849 0.94055 1.19587 1.38433 0.84872 0.96938 0.90695 1.25719 1.02749 1.00734 0.95460 1.70279 1.49672 1.32958 1.05147 0.85242 0.78366 0.80134 0.76652 1.21155 1.22627 1.19125 1.22689 0.97945 0.96534 0.85445 0.93297 0.91559 0.92228 0.91118 0.93728 0.92994 0.90098 0.93445 0.93602 0.87290 0.92837 0.92464 0.85238 0.93001 0.86614 0.89436 0.88820 0.90441 0.88538 0.98423 0.96214 0.94028 0.94219 0.94252 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.12 -2.20 5.93 30.59 0.18 -2.01 16 3 C -0.10 -1.95 5.23 30.60 0.16 -1.79 16 4 C 0.06 1.28 4.67 86.30 0.40 1.68 16 5 N -0.53 -11.94 4.26 -874.36 -3.72 -15.67 16 6 C 0.02 0.30 5.46 86.32 0.47 0.77 16 7 C 0.06 0.81 7.01 72.02 0.50 1.31 16 8 O -0.38 -7.49 10.83 -148.98 -1.61 -9.10 16 9 C 0.08 1.78 6.27 72.02 0.45 2.23 16 10 C 0.05 1.10 2.05 44.18 0.09 1.20 16 11 H 0.09 1.67 7.02 -2.38 -0.02 1.65 16 12 C 0.53 16.77 5.63 87.66 0.49 17.27 16 13 O -0.57 -23.34 16.08 -3.05 -0.05 -23.39 16 14 N -0.61 -18.79 3.33 -811.80 -2.70 -21.49 16 15 C 0.10 2.32 6.04 86.73 0.52 2.85 16 16 C -0.14 -3.78 6.49 31.78 0.21 -3.57 16 17 C 0.17 6.37 3.54 46.38 0.16 6.54 16 18 H 0.07 2.80 7.93 -2.39 -0.02 2.79 16 19 N -0.60 -28.89 2.96 -695.04 -2.06 -30.95 16 20 C 0.17 8.31 7.75 127.77 0.99 9.30 16 21 C -0.27 -14.42 9.61 84.03 0.81 -13.61 16 22 H 0.08 3.89 7.86 -2.91 -0.02 3.87 16 23 C -0.05 -2.83 4.96 84.86 0.42 -2.41 16 24 N -0.93 -55.37 10.92 21.65 0.24 -55.13 16 25 Si 0.97 44.68 29.60 68.60 2.03 46.71 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 C 0.10 3.88 6.51 86.86 0.57 4.44 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.18 6.65 -2.39 -0.02 1.17 16 37 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 38 H 0.05 1.37 6.10 -2.38 -0.01 1.35 16 39 H 0.11 1.26 6.54 -2.39 -0.02 1.24 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.09 1.56 7.91 -2.39 -0.02 1.54 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 2.19 6.16 -2.38 -0.01 2.18 16 48 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.00 -0.14 7.44 -2.39 -0.02 -0.16 16 50 H 0.02 1.00 7.26 -2.39 -0.02 0.99 16 51 H 0.04 1.64 6.16 -2.38 -0.01 1.63 16 52 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 53 H 0.04 1.77 7.99 -2.39 -0.02 1.75 16 54 H 0.05 2.16 7.20 -2.38 -0.02 2.14 16 Total: -1.00 -70.88 410.81 0.13 -70.75 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.85 Total: 15.56 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 7.15 Total: 22.70 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -8.25 Total: -123.24 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.66 Total: -32.48 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.88 0.13 -70.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972005754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.970 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds