Wall clock time and date at job start Tue Mar 31 2020 23:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 C 1.53003 * 109.46950 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46930 * 179.97438 * 4 3 2 6 6 C 1.47013 * 111.00037 * 289.64660 * 5 4 3 7 7 C 1.53098 * 109.25988 * 177.60854 * 6 5 4 8 8 O 1.43012 * 109.25546 * 56.84943 * 7 6 5 9 9 C 1.43013 * 113.73892 * 301.32863 * 8 7 6 10 10 C 1.47010 * 110.99849 * 166.01218 * 5 4 3 11 11 H 1.09004 * 109.54331 * 62.43707 * 10 5 4 12 12 C 1.50695 * 109.50996 * 302.32755 * 10 5 4 13 13 O 1.21290 * 119.99831 * 332.12544 * 12 10 5 14 14 N 1.34774 * 120.00666 * 152.12175 * 12 10 5 15 15 C 1.47031 * 125.64517 * 354.84375 * 14 12 10 16 16 C 1.54320 * 107.27307 * 178.97284 * 15 14 12 17 17 C 1.55165 * 103.09969 * 337.71934 * 16 15 14 18 18 H 1.08998 * 110.99933 * 277.51621 * 17 16 15 19 19 N 1.46496 * 111.00030 * 153.66599 * 17 16 15 20 20 C 1.46500 * 120.00212 * 301.44779 * 19 17 16 21 21 C 1.36933 * 120.00046 * 121.45524 * 19 17 16 22 22 H 1.07997 * 120.00359 * 20.96325 * 21 19 17 23 23 C 1.38821 * 120.00014 * 200.96083 * 21 19 17 24 24 N 1.31620 * 119.99777 * 14.69447 * 23 21 19 25 25 Si 1.86799 * 119.99891 * 194.69085 * 23 21 19 26 26 H 1.48505 * 109.47234 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46816 * 120.00081 * 25 23 21 28 28 H 1.48500 * 109.47037 * 239.99927 * 25 23 21 29 29 C 1.47423 * 125.65401 * 174.87836 * 14 12 10 30 30 H 1.08996 * 109.47408 * 60.00096 * 1 2 3 31 31 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47197 * 300.00436 * 1 2 3 33 33 H 1.08997 * 109.47262 * 240.00012 * 2 1 3 34 34 H 1.09002 * 109.46776 * 119.99699 * 2 1 3 35 35 H 1.09003 * 109.47527 * 59.99766 * 3 2 1 36 36 H 1.09004 * 109.46862 * 299.99937 * 3 2 1 37 37 H 1.08997 * 109.47262 * 60.00012 * 4 3 2 38 38 H 1.08993 * 109.46897 * 299.99926 * 4 3 2 39 39 H 1.08998 * 109.50788 * 57.67213 * 6 5 4 40 40 H 1.09004 * 109.54374 * 297.56765 * 6 5 4 41 41 H 1.08998 * 109.50928 * 296.91432 * 7 6 5 42 42 H 1.09000 * 109.50827 * 176.78065 * 7 6 5 43 43 H 1.09004 * 109.51039 * 298.73410 * 9 8 7 44 44 H 1.09002 * 109.50703 * 178.60770 * 9 8 7 45 45 H 1.08995 * 109.88020 * 59.55390 * 15 14 12 46 46 H 1.09002 * 109.88166 * 298.39256 * 15 14 12 47 47 H 1.08999 * 110.71817 * 96.16327 * 16 15 14 48 48 H 1.08990 * 110.72292 * 219.26630 * 16 15 14 49 49 H 1.08996 * 109.47130 * 95.08247 * 20 19 17 50 50 H 1.08998 * 109.47386 * 215.08901 * 20 19 17 51 51 H 1.09006 * 109.47040 * 335.08550 * 20 19 17 52 52 H 0.96997 * 119.99156 * 180.02562 * 24 23 21 53 53 H 1.08997 * 110.36566 * 322.93828 * 29 14 12 54 54 H 1.09008 * 110.36268 * 85.25646 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0013 6 6 3.7996 3.4777 -1.2939 7 6 4.2704 4.9331 -1.2309 8 8 5.6557 4.9659 -0.8774 9 6 5.9448 4.3419 0.3766 10 6 5.4910 2.8804 0.3299 11 1 6.0611 2.3465 -0.4304 12 6 5.7206 2.2390 1.6740 13 8 4.8374 2.2400 2.5052 14 7 6.9074 1.6641 1.9525 15 6 8.0213 1.4970 1.0075 16 6 9.1741 0.8152 1.7741 17 6 8.8564 1.1481 3.2560 18 1 9.2155 2.1432 3.5184 19 7 9.4182 0.1357 4.1536 20 6 9.0243 -1.2682 4.0123 21 6 10.3115 0.5018 5.1247 22 1 10.3534 1.5271 5.4612 23 6 11.1633 -0.4452 5.6768 24 7 11.3242 -1.6100 5.0854 25 14 12.0813 -0.0662 7.2589 26 1 11.7293 1.3007 7.7202 27 1 11.7000 -1.0533 8.3009 28 1 13.5438 -0.1452 7.0137 29 6 7.3034 1.0981 3.2549 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9286 0.8891 39 1 2.7311 3.4497 -1.5070 40 1 4.3416 2.9536 -2.0812 41 1 3.6905 5.4711 -0.4810 42 1 4.1321 5.4029 -2.2047 43 1 5.4136 4.8626 1.1734 44 1 7.0175 4.3840 0.5654 45 1 8.3452 2.4708 0.6404 46 1 7.7085 0.8692 0.1732 47 1 9.1622 -0.2623 1.6099 48 1 10.1351 1.2379 1.4813 49 1 9.7538 -1.7897 3.3928 50 1 8.9835 -1.7349 4.9965 51 1 8.0422 -1.3245 3.5426 52 1 11.9191 -2.2717 5.4714 53 1 6.9042 1.7034 4.0687 54 1 6.9572 0.0682 3.3419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972005755.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:50 Heat of formation + Delta-G solvation = -65.300076 kcal Electronic energy + Delta-G solvation = -31358.854030 eV Core-core repulsion = 27330.778810 eV Total energy + Delta-G solvation = -4028.075220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.77874 -40.18539 -38.79044 -37.54142 -36.57394 -35.23884 -33.62323 -32.56630 -31.25692 -30.62121 -29.42366 -28.09790 -27.45829 -26.23253 -24.87682 -23.76821 -23.67760 -22.07166 -21.74891 -20.95254 -20.12960 -18.97123 -18.45207 -17.76340 -17.54882 -17.25881 -16.62706 -16.47368 -16.30165 -16.00307 -15.64981 -15.39430 -15.15940 -15.11057 -14.85249 -14.68775 -14.43240 -14.30909 -14.10967 -13.91794 -13.61015 -13.45892 -13.31276 -13.00862 -12.94277 -12.85168 -12.53993 -12.49775 -12.39023 -12.23752 -12.13640 -12.06919 -12.00937 -11.91506 -11.84352 -11.66042 -11.47611 -11.37120 -11.04833 -10.67301 -10.61902 -9.72009 -9.45962 -8.82958 -7.85087 -5.31812 1.42737 1.46247 1.48886 1.58269 1.74995 2.50151 2.58871 2.84404 3.26454 3.40588 3.51959 3.66531 3.82459 3.86361 3.89600 3.93092 4.00706 4.07930 4.16058 4.20606 4.25484 4.27951 4.29815 4.37472 4.39588 4.51242 4.58864 4.64738 4.66288 4.68682 4.74246 4.79020 4.86970 4.89586 4.94569 4.97042 4.98377 5.04242 5.14840 5.20315 5.23103 5.29970 5.35608 5.38870 5.42661 5.63167 5.69755 5.75027 5.91606 6.02349 6.29382 6.47450 7.05322 7.12322 7.82634 8.25950 9.18366 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.002626 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.206817 B =10658.993599 C =11862.565438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.101 4.101 4 C 0.056 3.944 5 N -0.532 5.532 6 C 0.019 3.981 7 C 0.056 3.944 8 O -0.386 6.386 9 C 0.083 3.917 10 C 0.046 3.954 11 H 0.082 0.918 12 C 0.532 3.468 13 O -0.563 6.563 14 N -0.612 5.612 15 C 0.107 3.893 16 C -0.141 4.141 17 C 0.168 3.832 18 H 0.078 0.922 19 N -0.601 5.601 20 C 0.178 3.822 21 C -0.265 4.265 22 H 0.073 0.927 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.268 1.268 27 H -0.294 1.294 28 H -0.291 1.291 29 C 0.099 3.901 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.109 0.891 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.128 0.872 43 H 0.054 0.946 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.011 0.989 50 H 0.014 0.986 51 H 0.027 0.973 52 H 0.248 0.752 53 H 0.056 0.944 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.600 9.493 -18.407 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.072 4.072 5 N -0.258 5.258 6 C -0.108 4.108 7 C -0.021 4.021 8 O -0.304 6.304 9 C 0.005 3.995 10 C -0.066 4.066 11 H 0.100 0.900 12 C 0.320 3.680 13 O -0.441 6.441 14 N -0.346 5.346 15 C -0.015 4.015 16 C -0.181 4.181 17 C 0.059 3.941 18 H 0.097 0.903 19 N -0.322 5.322 20 C 0.033 3.967 21 C -0.394 4.394 22 H 0.091 0.909 23 C -0.245 4.245 24 N -0.581 5.581 25 Si 0.795 3.205 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.218 1.218 29 C -0.026 4.026 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.029 0.971 50 H 0.033 0.967 51 H 0.045 0.955 52 H 0.058 0.942 53 H 0.074 0.926 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.150 9.743 -17.680 26.488 hybrid contribution 1.011 -1.118 0.960 1.787 sum -16.138 8.626 -16.720 24.788 Atomic orbital electron populations 1.21729 0.94650 1.02051 1.02090 1.21483 0.96894 0.96129 1.01683 1.21470 0.92836 0.97157 1.02459 1.22178 0.97229 0.87714 1.00051 1.61972 1.13213 1.18479 1.32149 1.22978 1.03568 0.95641 0.88574 1.22950 0.81266 0.95115 1.02727 1.88013 1.26774 1.78052 1.37528 1.22461 1.02055 0.88166 0.86826 1.22212 0.91609 0.99207 0.93621 0.90012 1.20325 0.80291 0.77860 0.89521 1.90696 1.43124 1.59854 1.50382 1.48557 1.14703 1.57906 1.13465 1.22217 0.85466 1.01997 0.91821 1.23066 0.98175 1.00813 0.96056 1.21604 0.89653 0.93039 0.89803 0.90347 1.43978 1.48837 1.03424 1.36007 1.20511 0.93966 0.84214 0.97997 1.19573 1.11640 0.95680 1.12553 0.90905 1.25696 0.99198 0.97156 1.02450 1.70237 1.40261 1.07874 1.39699 0.85211 0.77766 0.77712 0.79775 1.19197 1.22086 1.21766 1.22665 0.97393 0.97643 0.84879 0.91674 0.92230 0.93189 0.91315 0.93552 0.92797 0.90300 0.93823 0.93220 0.87279 0.93082 0.92302 0.85373 0.92724 0.86608 0.88711 0.89939 0.91941 0.89564 0.97063 0.96737 0.95455 0.94230 0.92582 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.12 -2.09 5.93 30.60 0.18 -1.91 16 3 C -0.10 -1.86 5.23 30.60 0.16 -1.70 16 4 C 0.06 1.22 4.64 86.30 0.40 1.62 16 5 N -0.53 -11.55 4.24 -874.40 -3.71 -15.26 16 6 C 0.02 0.29 5.46 86.31 0.47 0.76 16 7 C 0.06 0.80 7.01 72.01 0.50 1.30 16 8 O -0.39 -7.46 10.83 -148.98 -1.61 -9.08 16 9 C 0.08 1.72 6.27 72.01 0.45 2.17 16 10 C 0.05 1.04 1.99 44.18 0.09 1.12 16 11 H 0.08 1.63 7.21 -2.38 -0.02 1.62 16 12 C 0.53 16.04 5.78 87.66 0.51 16.55 16 13 O -0.56 -21.62 15.85 -3.06 -0.05 -21.67 16 14 N -0.61 -18.07 3.33 -810.83 -2.70 -20.77 16 15 C 0.11 2.51 6.06 86.73 0.53 3.04 16 16 C -0.14 -4.33 6.52 31.78 0.21 -4.13 16 17 C 0.17 6.40 3.56 46.55 0.17 6.56 16 18 H 0.08 2.98 7.93 -2.39 -0.02 2.96 16 19 N -0.60 -29.03 2.97 -694.09 -2.06 -31.09 16 20 C 0.18 8.62 7.82 127.77 1.00 9.62 16 21 C -0.26 -14.14 9.63 84.04 0.81 -13.33 16 22 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.05 -2.72 5.07 84.86 0.43 -2.29 16 24 N -0.93 -54.08 10.69 21.65 0.23 -53.85 16 25 Si 0.97 44.54 29.58 68.60 2.03 46.57 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 29 C 0.10 3.57 6.45 87.02 0.56 4.13 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.12 6.66 -2.38 -0.02 1.10 16 37 H 0.04 0.83 8.07 -2.39 -0.02 0.81 16 38 H 0.05 1.43 5.97 -2.39 -0.01 1.41 16 39 H 0.11 1.23 6.55 -2.39 -0.02 1.22 16 40 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.12 2.09 7.88 -2.39 -0.02 2.07 16 45 H 0.09 1.73 7.88 -2.39 -0.02 1.71 16 46 H 0.08 1.63 8.00 -2.39 -0.02 1.62 16 47 H 0.06 2.11 7.28 -2.39 -0.02 2.10 16 48 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.01 0.58 7.39 -2.39 -0.02 0.57 16 50 H 0.01 0.75 7.24 -2.39 -0.02 0.73 16 51 H 0.03 1.15 6.05 -2.38 -0.01 1.14 16 52 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 53 H 0.06 2.19 8.09 -2.39 -0.02 2.17 16 54 H 0.06 2.14 6.06 -2.38 -0.01 2.13 16 Total: -1.00 -67.70 410.09 0.16 -67.54 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.86 Total: 15.44 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 7.18 Total: 22.16 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -8.24 Total: -120.96 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.66 Total: -30.74 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.70 0.16 -67.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972005755.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.237 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds