Wall clock time and date at job start Tue Mar 31 2020 23:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47151 * 2 1 4 4 C 1.52998 * 109.47246 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47424 * 179.97438 * 4 3 2 6 6 C 1.47023 * 111.03681 * 46.33484 * 5 4 3 7 7 C 1.53094 * 109.29107 * 182.35056 * 6 5 4 8 8 O 1.43010 * 109.26322 * 303.17312 * 7 6 5 9 9 C 1.43018 * 113.73865 * 58.66986 * 8 7 6 10 10 C 1.47017 * 111.00545 * 169.99426 * 5 4 3 11 11 H 1.08998 * 109.50213 * 297.58908 * 10 5 4 12 12 C 1.50706 * 109.50357 * 57.66977 * 10 5 4 13 13 O 1.21282 * 119.99855 * 28.32234 * 12 10 5 14 14 N 1.34775 * 120.00333 * 208.32303 * 12 10 5 15 15 C 1.47027 * 125.64489 * 354.87517 * 14 12 10 16 16 C 1.54316 * 107.27313 * 181.02178 * 15 14 12 17 17 C 1.55164 * 102.93979 * 22.19418 * 16 15 14 18 18 H 1.08996 * 111.03591 * 82.58609 * 17 16 15 19 19 N 1.46500 * 111.00449 * 206.42631 * 17 16 15 20 20 C 1.46505 * 120.00281 * 52.19250 * 19 17 16 21 21 C 1.36942 * 119.99845 * 232.19844 * 19 17 16 22 22 H 1.07998 * 119.99427 * 333.52217 * 21 19 17 23 23 C 1.38812 * 120.00024 * 153.24939 * 21 19 17 24 24 N 1.31621 * 120.00122 * 350.16473 * 23 21 19 25 25 Si 1.86803 * 119.99821 * 170.16132 * 23 21 19 26 26 H 1.48500 * 109.46949 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.46742 * 120.00090 * 25 23 21 28 28 H 1.48498 * 109.46931 * 240.00022 * 25 23 21 29 29 C 1.47416 * 125.65201 * 174.83052 * 14 12 10 30 30 H 1.09004 * 109.47286 * 60.00292 * 1 2 3 31 31 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46900 * 300.00241 * 1 2 3 33 33 H 1.09001 * 109.46900 * 239.99758 * 2 1 3 34 34 H 1.08997 * 109.47039 * 120.00063 * 2 1 3 35 35 H 1.08997 * 109.47209 * 59.99645 * 3 2 1 36 36 H 1.09004 * 109.46787 * 300.00014 * 3 2 1 37 37 H 1.08992 * 109.47599 * 59.98952 * 4 3 2 38 38 H 1.09004 * 109.46794 * 299.99465 * 4 3 2 39 39 H 1.09002 * 109.46755 * 62.41939 * 6 5 4 40 40 H 1.08996 * 109.50938 * 302.30985 * 6 5 4 41 41 H 1.09000 * 109.50509 * 183.23846 * 7 6 5 42 42 H 1.08999 * 109.54191 * 63.13368 * 7 6 5 43 43 H 1.08995 * 109.51036 * 181.39605 * 9 8 7 44 44 H 1.09008 * 109.53609 * 61.28793 * 9 8 7 45 45 H 1.08995 * 109.88144 * 300.44074 * 15 14 12 46 46 H 1.09003 * 109.87945 * 61.60242 * 15 14 12 47 47 H 1.08995 * 110.72367 * 263.83505 * 16 15 14 48 48 H 1.08997 * 110.72172 * 140.55021 * 16 15 14 49 49 H 1.09000 * 109.46766 * 272.25958 * 20 19 17 50 50 H 1.08997 * 109.46997 * 32.25972 * 20 19 17 51 51 H 1.08997 * 109.47193 * 152.26290 * 20 19 17 52 52 H 0.96992 * 120.00066 * 180.02562 * 24 23 21 53 53 H 1.08997 * 110.36597 * 37.07187 * 29 14 12 54 54 H 1.08997 * 110.46337 * 274.79574 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.3428 3.6411 0.9915 7 6 3.8421 5.0864 0.9165 8 8 5.2576 5.1076 1.1195 9 6 5.9873 4.3266 0.1692 10 6 5.5097 2.8737 0.2366 11 1 5.7301 2.4634 1.2220 12 6 6.2186 2.0616 -0.8167 13 8 5.7248 1.9321 -1.9168 14 7 7.4012 1.4793 -0.5361 15 6 8.1607 1.6403 0.7125 16 6 9.4551 0.8120 0.5715 17 6 9.6209 0.6856 -0.9661 18 1 10.0958 1.5738 -1.3827 19 7 10.3735 -0.5217 -1.3156 20 6 9.9582 -1.8229 -0.7857 21 6 11.4653 -0.4340 -2.1375 22 1 11.5390 0.3714 -2.8533 23 6 12.4800 -1.3770 -2.0467 24 7 12.4917 -2.2373 -1.0506 25 14 13.8286 -1.4250 -3.3384 26 1 13.5875 -0.3608 -4.3456 27 1 15.1449 -1.2028 -2.6880 28 1 13.8250 -2.7502 -4.0086 29 6 8.1470 0.5747 -1.4298 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8907 38 1 3.9336 0.9286 0.8892 39 1 3.5280 3.2433 1.9893 40 1 2.2737 3.6140 0.7808 41 1 3.3547 5.6804 1.6895 42 1 3.6087 5.5024 -0.0636 43 1 7.0512 4.3712 0.4017 44 1 5.8170 4.7197 -0.8332 45 1 8.4076 2.6911 0.8633 46 1 7.5739 1.2708 1.5535 47 1 9.3361 -0.1703 1.0285 48 1 10.3015 1.3419 1.0083 49 1 10.4293 -1.9877 0.1834 50 1 8.8745 -1.8391 -0.6704 51 1 10.2620 -2.6100 -1.4758 52 1 13.2009 -2.8959 -0.9870 53 1 8.0498 0.8998 -2.4656 54 1 7.7905 -0.4494 -1.3193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972005756.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:54 Heat of formation + Delta-G solvation = -65.224059 kcal Electronic energy + Delta-G solvation = -31342.406347 eV Core-core repulsion = 27314.334423 eV Total energy + Delta-G solvation = -4028.071924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.78375 -40.22073 -38.78882 -37.65260 -36.56662 -35.18525 -33.63916 -32.59080 -31.25253 -30.57566 -29.45323 -28.06860 -27.51231 -26.25278 -24.88038 -23.82641 -23.68577 -22.26672 -21.45412 -20.97145 -20.16728 -18.95707 -18.46168 -17.69307 -17.54312 -17.24419 -16.72685 -16.55351 -16.23072 -16.00131 -15.72046 -15.38919 -15.13997 -15.12721 -14.89794 -14.65828 -14.45439 -14.32497 -14.08595 -13.92731 -13.64702 -13.48649 -13.28073 -12.99526 -12.91403 -12.84498 -12.58305 -12.47680 -12.39842 -12.28901 -12.16082 -12.08417 -12.00308 -11.87062 -11.86024 -11.65389 -11.47128 -11.39103 -11.04711 -10.66873 -10.62197 -9.71988 -9.44863 -8.75863 -7.87667 -5.38188 1.42003 1.45834 1.48058 1.57753 1.75691 2.49148 2.59316 2.84431 3.26212 3.41055 3.51881 3.65373 3.82644 3.86613 3.89601 3.91146 4.01196 4.05258 4.15177 4.16241 4.24574 4.28760 4.31645 4.36892 4.40391 4.51405 4.58172 4.64286 4.67504 4.69149 4.75508 4.79377 4.87647 4.88831 4.93319 4.96339 4.97821 5.05051 5.15149 5.19697 5.21695 5.28662 5.33101 5.39347 5.41712 5.62226 5.67657 5.73794 5.90420 6.02295 6.32390 6.47620 7.05378 7.12787 7.81176 8.26931 9.16957 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002590 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.042672 B =10807.913590 C =11935.541904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.109 4.109 4 C 0.055 3.945 5 N -0.532 5.532 6 C 0.016 3.984 7 C 0.055 3.945 8 O -0.385 6.385 9 C 0.082 3.918 10 C 0.046 3.954 11 H 0.082 0.918 12 C 0.531 3.469 13 O -0.564 6.564 14 N -0.612 5.612 15 C 0.107 3.893 16 C -0.139 4.139 17 C 0.167 3.833 18 H 0.075 0.925 19 N -0.601 5.601 20 C 0.179 3.821 21 C -0.268 4.268 22 H 0.068 0.932 23 C -0.045 4.045 24 N -0.933 5.933 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.289 1.289 28 H -0.292 1.292 29 C 0.099 3.901 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.006 0.994 50 H 0.022 0.978 51 H 0.022 0.978 52 H 0.250 0.750 53 H 0.053 0.947 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.627 12.222 9.450 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.147 4.147 4 C -0.073 4.073 5 N -0.258 5.258 6 C -0.111 4.111 7 C -0.021 4.021 8 O -0.304 6.304 9 C 0.004 3.996 10 C -0.066 4.066 11 H 0.099 0.901 12 C 0.320 3.680 13 O -0.442 6.442 14 N -0.346 5.346 15 C -0.015 4.015 16 C -0.179 4.179 17 C 0.058 3.942 18 H 0.093 0.907 19 N -0.322 5.322 20 C 0.034 3.966 21 C -0.398 4.398 22 H 0.086 0.914 23 C -0.241 4.241 24 N -0.579 5.579 25 Si 0.796 3.204 26 H -0.193 1.193 27 H -0.216 1.216 28 H -0.219 1.219 29 C -0.026 4.026 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.135 0.865 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.025 0.975 50 H 0.040 0.960 51 H 0.041 0.959 52 H 0.059 0.941 53 H 0.072 0.928 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.841 12.360 8.563 26.517 hybrid contribution 1.224 -1.325 -0.373 1.842 sum -20.618 11.035 8.190 24.778 Atomic orbital electron populations 1.21728 0.94380 1.02087 1.02267 1.21489 0.97048 0.96125 1.01674 1.21667 0.92335 0.97625 1.03058 1.22198 0.97115 0.88030 0.99948 1.62001 1.01192 1.12378 1.50217 1.23044 1.00633 0.93970 0.93466 1.22969 0.80345 0.95491 1.03322 1.88011 1.19500 1.69261 1.53588 1.22479 0.97243 0.86243 0.93620 1.22233 0.89999 0.97994 0.96387 0.90066 1.20352 0.79673 0.79339 0.88672 1.90681 1.66124 1.62288 1.25090 1.48560 1.20266 1.46712 1.19105 1.22225 0.92048 1.01623 0.85642 1.23020 0.96806 1.00342 0.97728 1.21537 0.89053 0.89849 0.93780 0.90712 1.43937 1.30457 1.01984 1.55828 1.20477 0.93014 0.86412 0.96698 1.19525 0.96464 1.12053 1.11789 0.91424 1.25819 0.99568 0.99424 0.99246 1.70187 1.34456 1.21772 1.31457 0.85196 0.78993 0.77351 0.78831 1.19294 1.21588 1.21899 1.22605 0.93488 0.92744 0.93781 0.92660 0.92383 0.91756 0.93241 0.91920 0.89842 0.91564 0.92832 0.94955 0.93163 0.86841 0.85339 0.92284 0.86512 0.92675 0.88797 0.89706 0.91593 0.89579 0.97535 0.95976 0.95879 0.94088 0.92828 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.13 -2.00 5.93 30.59 0.18 -1.82 16 3 C -0.11 -1.81 4.48 30.59 0.14 -1.67 16 4 C 0.05 1.22 4.66 86.30 0.40 1.62 16 5 N -0.53 -11.77 4.42 -874.41 -3.87 -15.63 16 6 C 0.02 0.24 4.94 86.31 0.43 0.66 16 7 C 0.06 0.79 7.01 72.01 0.50 1.30 16 8 O -0.39 -7.47 10.83 -148.98 -1.61 -9.08 16 9 C 0.08 1.70 6.27 72.01 0.45 2.16 16 10 C 0.05 1.06 1.86 44.18 0.08 1.14 16 11 H 0.08 1.67 7.20 -2.39 -0.02 1.66 16 12 C 0.53 16.29 6.12 87.66 0.54 16.82 16 13 O -0.56 -21.97 15.61 -3.03 -0.05 -22.01 16 14 N -0.61 -18.36 3.33 -811.81 -2.70 -21.06 16 15 C 0.11 2.53 6.24 86.73 0.54 3.07 16 16 C -0.14 -4.30 6.50 31.78 0.21 -4.10 16 17 C 0.17 6.46 3.55 46.39 0.16 6.62 16 18 H 0.07 2.94 7.96 -2.39 -0.02 2.92 16 19 N -0.60 -29.18 2.95 -695.00 -2.05 -31.23 16 20 C 0.18 8.61 7.66 127.77 0.98 9.59 16 21 C -0.27 -14.44 9.57 84.03 0.80 -13.63 16 22 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 23 C -0.04 -2.45 5.11 84.86 0.43 -2.02 16 24 N -0.93 -53.78 10.82 21.65 0.23 -53.55 16 25 Si 0.97 44.48 29.57 68.60 2.03 46.51 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 29 C 0.10 3.63 6.51 86.86 0.57 4.19 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.04 6.28 -2.39 -0.02 1.03 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.59 6.56 -2.39 -0.02 1.58 16 38 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.29 6.06 -2.39 -0.01 1.28 16 41 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.12 2.07 7.42 -2.39 -0.02 2.06 16 44 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.09 1.75 7.42 -2.39 -0.02 1.73 16 46 H 0.08 1.67 7.75 -2.39 -0.02 1.65 16 47 H 0.07 2.21 6.96 -2.39 -0.02 2.19 16 48 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.01 0.33 7.56 -2.39 -0.02 0.31 16 50 H 0.02 0.93 6.38 -2.39 -0.02 0.92 16 51 H 0.02 1.21 7.02 -2.39 -0.02 1.20 16 52 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 53 H 0.05 2.15 7.99 -2.39 -0.02 2.13 16 54 H 0.06 2.16 6.35 -2.39 -0.02 2.14 16 Total: -1.00 -67.88 407.86 -0.03 -67.91 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.86 Total: 15.33 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 7.13 Total: 22.81 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -8.38 Total: -121.47 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.66 Total: -31.09 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.88 -0.03 -67.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972005756.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.687 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds