Wall clock time and date at job start Tue Mar 31 2020 23:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.52996 * 109.47160 * 179.97438 * 3 2 1 5 5 N 1.46909 * 109.47262 * 180.02562 * 4 3 2 6 6 C 1.47012 * 110.99944 * 69.84323 * 5 4 3 7 7 C 1.53092 * 109.25559 * 182.39342 * 6 5 4 8 8 O 1.43022 * 109.26017 * 303.15215 * 7 6 5 9 9 C 1.43013 * 113.77448 * 58.64757 * 8 7 6 10 10 C 1.47017 * 110.99759 * 193.47767 * 5 4 3 11 11 H 1.08991 * 109.50839 * 297.58338 * 10 5 4 12 12 C 1.50697 * 109.50520 * 57.67394 * 10 5 4 13 13 O 1.21283 * 120.00408 * 31.03962 * 12 10 5 14 14 N 1.34771 * 120.00259 * 211.03765 * 12 10 5 15 15 C 1.47034 * 125.64580 * 356.22909 * 14 12 10 16 16 C 1.54322 * 107.26862 * 178.99500 * 15 14 12 17 17 C 1.55153 * 102.94705 * 337.80375 * 16 15 14 18 18 H 1.09001 * 111.00830 * 277.39334 * 17 16 15 19 19 N 1.46496 * 111.00409 * 153.57543 * 17 16 15 20 20 C 1.46495 * 120.00517 * 304.58718 * 19 17 16 21 21 C 1.36944 * 119.99667 * 124.58482 * 19 17 16 22 22 H 1.08000 * 119.99749 * 341.35226 * 21 19 17 23 23 C 1.38805 * 119.99882 * 161.63115 * 21 19 17 24 24 N 1.31618 * 120.00358 * 343.53405 * 23 21 19 25 25 Si 1.86805 * 120.00075 * 163.53267 * 23 21 19 26 26 H 1.48493 * 109.46770 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46897 * 119.99891 * 25 23 21 28 28 H 1.48504 * 109.47041 * 240.00209 * 25 23 21 29 29 C 1.47466 * 125.63488 * 176.24801 * 14 12 10 30 30 H 1.08998 * 109.47235 * 59.99819 * 1 2 3 31 31 H 1.08997 * 109.47718 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47310 * 299.99985 * 1 2 3 33 33 H 1.09001 * 109.47208 * 240.00455 * 2 1 3 34 34 H 1.08998 * 109.47235 * 120.00181 * 2 1 3 35 35 H 1.09003 * 109.47095 * 60.00472 * 3 2 1 36 36 H 1.08996 * 109.47674 * 300.00003 * 3 2 1 37 37 H 1.08995 * 109.47310 * 60.00015 * 4 3 2 38 38 H 1.09007 * 109.47055 * 300.00105 * 4 3 2 39 39 H 1.09001 * 109.50733 * 302.32964 * 6 5 4 40 40 H 1.09006 * 109.50514 * 62.46212 * 6 5 4 41 41 H 1.08997 * 109.51035 * 63.08858 * 7 6 5 42 42 H 1.09000 * 109.50554 * 183.17493 * 7 6 5 43 43 H 1.09004 * 109.54295 * 181.44647 * 9 8 7 44 44 H 1.08995 * 109.47605 * 61.31084 * 9 8 7 45 45 H 1.08997 * 109.87928 * 59.57803 * 15 14 12 46 46 H 1.09005 * 109.87670 * 298.41217 * 15 14 12 47 47 H 1.09000 * 110.71409 * 219.44111 * 16 15 14 48 48 H 1.08994 * 110.71841 * 96.17307 * 16 15 14 49 49 H 1.09010 * 109.47013 * 264.62378 * 20 19 17 50 50 H 1.09002 * 109.47170 * 24.61340 * 20 19 17 51 51 H 1.08992 * 109.47411 * 144.62064 * 20 19 17 52 52 H 0.97002 * 120.00977 * 179.97438 * 24 23 21 53 53 H 1.09010 * 110.34432 * 85.23447 * 29 14 12 54 54 H 1.09000 * 110.40872 * 322.90048 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7888 3.4815 1.2898 7 6 4.2602 4.9367 1.2263 8 8 5.6485 4.9684 0.8842 9 6 5.9490 4.3404 -0.3651 10 6 5.4938 2.8794 -0.3180 11 1 6.0568 2.3472 0.4486 12 6 5.7345 2.2339 -1.6583 13 8 4.8796 2.2825 -2.5172 14 7 6.8999 1.6026 -1.9027 15 6 8.0470 1.5357 -0.9852 16 6 9.1383 0.6920 -1.6771 17 6 8.3319 -0.1424 -2.7071 18 1 7.8920 -1.0226 -2.2382 19 7 9.1701 -0.5217 -3.8471 20 6 9.8725 0.5093 -4.6151 21 6 9.2971 -1.8401 -4.1948 22 1 9.0451 -2.6128 -3.4836 23 6 9.7551 -2.1833 -5.4594 24 7 9.7597 -1.2872 -6.4234 25 14 10.3651 -3.9171 -5.7932 26 1 10.2578 -4.7268 -4.5531 27 1 9.5394 -4.5352 -6.8616 28 1 11.7836 -3.8673 -6.2300 29 6 7.2357 0.8651 -3.1348 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 2.7185 3.4541 1.4940 40 1 4.3248 2.9596 2.0826 41 1 3.6866 5.4724 0.4699 42 1 4.1130 5.4096 2.1973 43 1 7.0233 4.3812 -0.5446 44 1 5.4251 4.8591 -1.1679 45 1 7.7473 1.0603 -0.0513 46 1 8.4234 2.5396 -0.7886 47 1 9.6359 0.0409 -0.9583 48 1 9.8602 1.3342 -2.1816 49 1 9.2762 0.7835 -5.4854 50 1 10.0259 1.3879 -3.9884 51 1 10.8378 0.1238 -4.9429 52 1 10.0802 -1.5268 -7.3070 53 1 7.6222 1.5478 -3.8916 54 1 6.3603 0.3360 -3.5115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972005757.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:58 Heat of formation + Delta-G solvation = -65.693850 kcal Electronic energy + Delta-G solvation = -31432.447204 eV Core-core repulsion = 27404.354908 eV Total energy + Delta-G solvation = -4028.092296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.77898 -40.19286 -38.80206 -37.55590 -36.58294 -35.24603 -33.64329 -32.57524 -31.21089 -30.63310 -29.46198 -28.09059 -27.45945 -26.25384 -24.84683 -23.80710 -23.68768 -22.07109 -21.74594 -20.94818 -20.11782 -18.97986 -18.45682 -17.82757 -17.48961 -17.27131 -16.60758 -16.50432 -16.35778 -16.01440 -15.59692 -15.43384 -15.13594 -15.06806 -14.88487 -14.60405 -14.44118 -14.26541 -14.22445 -13.85150 -13.62656 -13.49192 -13.31289 -13.15009 -12.94022 -12.81806 -12.54761 -12.47065 -12.41050 -12.24699 -12.17019 -12.06519 -12.01023 -11.92118 -11.81186 -11.66532 -11.43684 -11.38021 -11.04504 -10.65609 -10.64165 -9.72082 -9.46027 -8.86768 -7.85783 -5.31026 1.42490 1.46383 1.47911 1.58117 1.76221 2.49750 2.58510 2.83872 3.25414 3.40721 3.52683 3.65331 3.80679 3.85977 3.90769 3.92485 4.01876 4.07372 4.16587 4.19910 4.24429 4.27717 4.31665 4.36799 4.41567 4.50329 4.57692 4.64222 4.66307 4.69648 4.77035 4.78017 4.83442 4.89121 4.93969 4.96534 4.99108 5.03591 5.15987 5.19832 5.22533 5.28962 5.34817 5.41471 5.41893 5.62131 5.71176 5.74418 5.91184 6.01706 6.27669 6.49056 7.06234 7.11403 7.82707 8.24802 9.17789 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.002840 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.340348 B = 9855.371131 C =11424.486448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.057 3.943 5 N -0.534 5.534 6 C 0.020 3.980 7 C 0.056 3.944 8 O -0.384 6.384 9 C 0.083 3.917 10 C 0.047 3.953 11 H 0.085 0.915 12 C 0.529 3.471 13 O -0.568 6.568 14 N -0.613 5.613 15 C 0.104 3.896 16 C -0.138 4.138 17 C 0.167 3.833 18 H 0.073 0.927 19 N -0.601 5.601 20 C 0.177 3.823 21 C -0.265 4.265 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.938 5.938 25 Si 0.969 3.031 26 H -0.264 1.264 27 H -0.297 1.297 28 H -0.290 1.290 29 C 0.100 3.900 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.075 0.925 49 H -0.003 1.003 50 H 0.038 0.962 51 H 0.021 0.979 52 H 0.248 0.752 53 H 0.048 0.952 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 10.356 21.858 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.071 4.071 5 N -0.260 5.260 6 C -0.107 4.107 7 C -0.020 4.020 8 O -0.303 6.303 9 C 0.005 3.995 10 C -0.065 4.065 11 H 0.103 0.897 12 C 0.317 3.683 13 O -0.446 6.446 14 N -0.347 5.347 15 C -0.018 4.018 16 C -0.178 4.178 17 C 0.058 3.942 18 H 0.092 0.908 19 N -0.322 5.322 20 C 0.032 3.968 21 C -0.395 4.395 22 H 0.095 0.905 23 C -0.249 4.249 24 N -0.585 5.585 25 Si 0.797 3.203 26 H -0.188 1.188 27 H -0.224 1.224 28 H -0.217 1.217 29 C -0.025 4.025 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.135 0.865 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.094 0.906 49 H 0.015 0.985 50 H 0.056 0.944 51 H 0.040 0.960 52 H 0.057 0.943 53 H 0.067 0.933 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.782 10.743 21.018 26.382 hybrid contribution 0.520 -1.644 -0.991 1.989 sum -11.262 9.099 20.027 24.713 Atomic orbital electron populations 1.21726 0.94610 1.02059 1.02108 1.21485 0.96938 0.96140 1.01668 1.21476 0.92851 0.97157 1.02487 1.22160 0.97208 0.87722 0.99976 1.61961 1.12965 1.18326 1.32770 1.22983 1.03563 0.95610 0.88577 1.22949 0.81168 0.95104 1.02822 1.88004 1.26525 1.77844 1.37879 1.22461 1.01989 0.88128 0.86918 1.22213 0.91558 0.99198 0.93509 0.89735 1.20423 0.80176 0.78050 0.89640 1.90698 1.45037 1.60415 1.48422 1.48643 1.15099 1.52052 1.18930 1.22287 0.84877 1.01794 0.92813 1.23060 0.97393 0.98775 0.98541 1.21591 0.89438 0.94743 0.88470 0.90831 1.44096 1.51669 1.03542 1.32866 1.20525 0.94840 0.89088 0.92310 1.19641 1.39528 0.84010 0.96309 0.90520 1.25725 1.02653 1.01303 0.95191 1.70283 1.51327 1.35300 1.01543 0.85177 0.77283 0.80035 0.77764 1.18777 1.22405 1.21699 1.22695 0.98521 0.94360 0.86957 0.93267 0.92246 0.91531 0.93762 0.91174 0.90084 0.92928 0.93612 0.93582 0.87298 0.92900 0.92439 0.85242 0.86465 0.92966 0.89203 0.88901 0.88488 0.90597 0.98506 0.94383 0.96002 0.94274 0.93323 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -2.24 5.93 30.59 0.18 -2.06 16 3 C -0.10 -1.97 5.22 30.59 0.16 -1.81 16 4 C 0.06 1.30 4.66 86.30 0.40 1.70 16 5 N -0.53 -11.99 4.26 -874.38 -3.72 -15.71 16 6 C 0.02 0.30 5.46 86.31 0.47 0.77 16 7 C 0.06 0.81 7.01 72.01 0.50 1.31 16 8 O -0.38 -7.38 10.82 -148.98 -1.61 -9.00 16 9 C 0.08 1.74 6.28 72.02 0.45 2.19 16 10 C 0.05 1.10 1.96 44.18 0.09 1.18 16 11 H 0.09 1.68 7.04 -2.39 -0.02 1.66 16 12 C 0.53 16.72 5.67 87.66 0.50 17.22 16 13 O -0.57 -23.26 16.06 -3.04 -0.05 -23.31 16 14 N -0.61 -18.75 3.33 -811.65 -2.70 -21.45 16 15 C 0.10 2.31 6.22 86.73 0.54 2.85 16 16 C -0.14 -3.81 6.48 31.78 0.21 -3.60 16 17 C 0.17 6.36 3.54 46.38 0.16 6.53 16 18 H 0.07 2.84 7.92 -2.39 -0.02 2.82 16 19 N -0.60 -29.00 2.97 -695.04 -2.06 -31.06 16 20 C 0.18 8.55 7.72 127.77 0.99 9.53 16 21 C -0.26 -14.20 9.65 84.03 0.81 -13.39 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.05 -2.98 5.04 84.86 0.43 -2.55 16 24 N -0.94 -55.52 10.64 21.65 0.23 -55.29 16 25 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 26 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 29 C 0.10 3.90 6.48 86.85 0.56 4.46 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.20 6.64 -2.39 -0.02 1.18 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.39 6.08 -2.39 -0.01 1.37 16 38 H 0.05 0.91 8.08 -2.38 -0.02 0.89 16 39 H 0.11 1.27 6.53 -2.39 -0.02 1.25 16 40 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 2.07 7.86 -2.38 -0.02 2.05 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.57 7.67 -2.39 -0.02 1.55 16 46 H 0.09 1.60 7.86 -2.38 -0.02 1.58 16 47 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.08 2.18 6.17 -2.39 -0.01 2.16 16 49 H 0.00 -0.19 7.43 -2.38 -0.02 -0.20 16 50 H 0.04 1.53 6.17 -2.39 -0.01 1.51 16 51 H 0.02 1.13 7.13 -2.39 -0.02 1.11 16 52 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 53 H 0.05 2.07 7.20 -2.38 -0.02 2.06 16 54 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 Total: -1.00 -70.85 409.79 0.14 -70.71 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.86 Total: 15.61 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.17 Total: 22.81 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -8.25 Total: -123.51 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.66 Total: -32.31 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -70.85 0.14 -70.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972005757.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds