Wall clock time and date at job start Tue Mar 31 2020 23:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 C 1.52993 * 109.46773 * 120.00375 * 2 1 3 5 5 N 1.46902 * 109.46801 * 199.20248 * 4 2 1 6 6 C 1.47010 * 111.00224 * 287.16318 * 5 4 2 7 7 C 1.53097 * 109.25521 * 177.60489 * 6 5 4 8 8 O 1.43020 * 109.26160 * 56.85450 * 7 6 5 9 9 C 1.43015 * 113.73341 * 301.32570 * 8 7 6 10 10 C 1.47023 * 110.99804 * 163.52597 * 5 4 2 11 11 C 1.50702 * 109.46804 * 240.00106 * 2 1 3 12 12 O 1.21282 * 119.99964 * 242.76607 * 11 2 1 13 13 N 1.34779 * 120.00071 * 62.77351 * 11 2 1 14 14 C 1.48215 * 119.97038 * 4.26350 * 13 11 2 15 15 C 1.47134 * 110.34722 * 102.46457 * 14 13 11 16 16 C 1.53793 * 111.84134 * 58.29527 * 15 14 13 17 17 N 1.43471 * 107.96397 * 281.67384 * 16 15 14 18 18 C 1.36933 * 118.94173 * 273.62983 * 17 16 15 19 19 H 1.08004 * 120.00144 * 29.01856 * 18 17 16 20 20 C 1.38816 * 120.00229 * 209.02370 * 18 17 16 21 21 N 1.31612 * 119.99622 * 9.74130 * 20 18 17 22 22 Si 1.86795 * 120.00076 * 189.73858 * 20 18 17 23 23 H 1.48501 * 109.47163 * 60.00099 * 22 20 18 24 24 H 1.48502 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47271 * 300.00171 * 22 20 18 26 26 C 1.48860 * 122.11930 * 93.65104 * 17 16 15 27 27 C 1.43617 * 119.97081 * 183.98255 * 13 11 2 28 28 H 1.08992 * 109.46958 * 313.69960 * 1 2 3 29 29 H 1.08997 * 109.46920 * 73.69992 * 1 2 3 30 30 H 1.09000 * 109.47283 * 193.69640 * 1 2 3 31 31 H 1.08997 * 109.46995 * 193.54594 * 3 2 1 32 32 H 1.09001 * 109.47322 * 313.55332 * 3 2 1 33 33 H 1.09003 * 109.46982 * 73.54982 * 3 2 1 34 34 H 1.08993 * 109.47574 * 319.20261 * 4 2 1 35 35 H 1.09002 * 109.47638 * 79.21044 * 4 2 1 36 36 H 1.08999 * 109.50837 * 297.53744 * 6 5 4 37 37 H 1.09000 * 109.50906 * 57.67628 * 6 5 4 38 38 H 1.08998 * 109.51342 * 296.91672 * 7 6 5 39 39 H 1.09003 * 109.53986 * 176.80476 * 7 6 5 40 40 H 1.08997 * 109.50846 * 298.73297 * 9 8 7 41 41 H 1.09002 * 109.54169 * 178.62620 * 9 8 7 42 42 H 1.08994 * 109.50817 * 302.33139 * 10 5 4 43 43 H 1.08998 * 109.50462 * 62.42028 * 10 5 4 44 44 H 1.09004 * 109.32544 * 222.73210 * 14 13 11 45 45 H 1.09002 * 109.32464 * 342.36756 * 14 13 11 46 46 H 1.08996 * 109.01040 * 178.90384 * 15 14 13 47 47 H 1.09000 * 109.00776 * 297.76406 * 15 14 13 48 48 H 1.08998 * 109.76316 * 41.28494 * 16 15 14 49 49 H 1.08999 * 109.76737 * 162.00711 * 16 15 14 50 50 H 0.97008 * 120.00009 * 179.97438 * 21 20 18 51 51 H 1.08986 * 109.48347 * 80.58139 * 26 17 16 52 52 H 1.09003 * 109.47656 * 200.60954 * 26 17 16 53 53 H 1.08998 * 108.87319 * 31.47698 * 27 13 11 54 54 H 1.09009 * 108.87121 * 149.91050 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4364 -0.3397 1.4992 6 6 4.3368 -0.9636 0.5188 7 6 5.7702 -0.4929 0.7787 8 8 6.1337 -0.8090 2.1254 9 6 5.2780 -0.2171 3.1066 10 6 3.8394 -0.6849 2.8703 11 6 2.0324 -0.7104 -1.2305 12 8 2.6876 -1.7250 -1.1200 13 7 1.7535 -0.2182 -2.4538 14 6 1.0346 1.0710 -2.5870 15 6 1.9753 2.1479 -2.9339 16 6 2.7265 1.8517 -4.2428 17 7 3.7688 0.9098 -3.9513 18 6 4.9807 1.3760 -3.5166 19 1 5.0360 2.3011 -2.9619 20 6 6.1382 0.6597 -3.7888 21 7 6.1013 -0.3585 -4.6219 22 14 7.7481 1.1412 -2.9729 23 1 7.6043 1.0434 -1.4982 24 1 8.8260 0.2258 -3.4264 25 1 8.0938 2.5366 -3.3451 26 6 3.5753 -0.5580 -4.1068 27 6 2.1585 -0.9405 -3.6272 28 1 -0.3633 0.7099 0.7429 29 1 -0.3633 0.2884 -0.9863 30 1 -0.3634 -0.9984 0.2433 31 1 3.1031 1.4520 -0.2407 32 1 1.4936 2.0211 -0.7448 33 1 1.8868 1.8820 0.9856 34 1 1.4277 -0.4409 2.1061 35 1 1.9797 -1.7989 1.0966 36 1 4.2863 -2.0480 0.6168 37 1 4.0356 -0.6740 -0.4879 38 1 5.8325 0.5848 0.6283 39 1 6.4496 -0.9963 0.0908 40 1 5.3259 0.8687 3.0239 41 1 5.6005 -0.5208 4.1025 42 1 3.1752 -0.1919 3.5800 43 1 3.7803 -1.7648 3.0061 44 1 0.2808 0.9846 -3.3696 45 1 0.5474 1.3117 -1.6420 46 1 1.4220 3.0804 -3.0454 47 1 2.7000 2.2597 -2.1275 48 1 2.0393 1.4262 -4.9740 49 1 3.1594 2.7716 -4.6357 50 1 6.9102 -0.8589 -4.8125 51 1 3.6919 -0.8309 -5.1554 52 1 4.3168 -1.0876 -3.5086 53 1 2.1418 -2.0080 -3.4074 54 1 1.4490 -0.7365 -4.4293 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981447310.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:08 Heat of formation + Delta-G solvation = -29.415986 kcal Electronic energy + Delta-G solvation = -34517.197479 eV Core-core repulsion = 30490.678309 eV Total energy + Delta-G solvation = -4026.519169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.10360 -40.33867 -38.72114 -37.37722 -36.40242 -34.94439 -33.88025 -32.64017 -32.12489 -29.49254 -28.99852 -28.17860 -27.12986 -25.59017 -25.36072 -24.98379 -24.10972 -22.04491 -21.44067 -21.18495 -19.38333 -18.60651 -17.89593 -17.52312 -17.36148 -17.13873 -16.89274 -16.35520 -16.03698 -15.94298 -15.72002 -15.48960 -15.35119 -15.02757 -14.96526 -14.78292 -14.34740 -14.00791 -13.65361 -13.53735 -13.42649 -13.27589 -13.19726 -12.91242 -12.85062 -12.75199 -12.66414 -12.44454 -12.35414 -12.16064 -12.10992 -12.06728 -11.92508 -11.75875 -11.66867 -11.46465 -11.29094 -11.19596 -10.62510 -10.51012 -10.34295 -9.40239 -9.34999 -8.56326 -7.82652 -5.30235 1.38206 1.42684 1.46035 1.80149 2.29630 2.49652 2.74189 2.91422 3.33109 3.47233 3.76127 3.81070 3.93347 3.99897 4.05431 4.12297 4.14012 4.18563 4.25866 4.33059 4.37018 4.42749 4.55472 4.60266 4.62357 4.63406 4.68937 4.72057 4.81286 4.83974 4.85554 4.87977 4.92972 4.99477 5.00990 5.04706 5.05676 5.09978 5.21382 5.31921 5.35940 5.41723 5.53828 5.62239 5.69043 5.74323 5.91040 5.94868 6.07132 6.12348 6.43784 6.65984 7.20869 7.40667 7.98240 8.40440 9.21392 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.006985 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.125109 B = 4007.516245 C = 6037.639325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.077 3.923 5 N -0.528 5.528 6 C 0.041 3.959 7 C 0.069 3.931 8 O -0.408 6.408 9 C 0.056 3.944 10 C 0.019 3.981 11 C 0.510 3.490 12 O -0.584 6.584 13 N -0.581 5.581 14 C 0.097 3.903 15 C -0.169 4.169 16 C 0.154 3.846 17 N -0.599 5.599 18 C -0.245 4.245 19 H 0.060 0.940 20 C -0.044 4.044 21 N -0.936 5.936 22 Si 0.942 3.058 23 H -0.280 1.280 24 H -0.300 1.300 25 H -0.273 1.273 26 C 0.184 3.816 27 C 0.105 3.895 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.023 0.977 36 H 0.014 0.986 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.030 0.970 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.095 0.905 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.035 0.965 50 H 0.244 0.756 51 H 0.009 0.991 52 H 0.024 0.976 53 H 0.054 0.946 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.376 4.749 13.303 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.184 4.184 4 C -0.051 4.051 5 N -0.253 5.253 6 C -0.088 4.088 7 C -0.008 4.008 8 O -0.327 6.327 9 C -0.020 4.020 10 C -0.109 4.109 11 C 0.300 3.700 12 O -0.466 6.466 13 N -0.311 5.311 14 C -0.023 4.023 15 C -0.209 4.209 16 C 0.027 3.973 17 N -0.321 5.321 18 C -0.376 4.376 19 H 0.077 0.923 20 C -0.239 4.239 21 N -0.582 5.582 22 Si 0.772 3.228 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.199 1.199 26 C 0.058 3.942 27 C -0.021 4.021 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.048 0.952 44 H 0.107 0.893 45 H 0.143 0.857 46 H 0.114 0.886 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.026 0.974 52 H 0.043 0.957 53 H 0.072 0.928 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.751 4.525 13.262 21.081 hybrid contribution 1.789 -1.189 -0.412 2.188 sum -13.961 3.335 12.850 19.265 Atomic orbital electron populations 1.22095 0.89639 1.03710 1.04680 1.20822 0.98644 0.97216 0.90872 1.22091 1.00335 0.92365 1.03568 1.22080 0.88525 0.96970 0.97525 1.62334 1.02628 1.57916 1.02420 1.22826 0.92214 0.95418 0.98295 1.22556 0.95640 0.99403 0.83181 1.87915 1.55001 1.74330 1.15474 1.22932 0.88686 0.98011 0.92378 1.22873 0.98111 0.99188 0.90742 1.21201 0.78540 0.84481 0.85792 1.90660 1.40473 1.28538 1.86940 1.47456 1.56007 1.22982 1.04633 1.21635 0.94254 0.81535 1.04900 1.21927 0.99475 0.99193 1.00311 1.20501 0.89914 0.92152 0.94712 1.43764 1.10260 1.00786 1.77303 1.19256 0.84865 1.06662 1.26773 0.92250 1.25644 1.00179 0.99320 0.98770 1.70125 1.27338 1.23139 1.37645 0.85720 0.80845 0.77553 0.78706 1.20619 1.22662 1.19903 1.21342 0.92803 0.84016 0.96060 1.21496 0.96978 0.95664 0.87979 0.88200 0.90115 0.92187 0.95195 0.89736 0.90080 0.86867 0.95830 0.96771 0.89586 0.93377 0.91242 0.92078 0.85944 0.86303 0.95183 0.89291 0.85729 0.88649 0.92738 0.93519 0.94688 0.94715 0.97352 0.95730 0.92798 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.00 71.99 0.58 -1.71 16 2 C -0.07 -1.79 0.52 -52.93 -0.03 -1.82 16 3 C -0.13 -3.06 6.16 71.98 0.44 -2.62 16 4 C 0.08 1.97 4.22 86.30 0.36 2.34 16 5 N -0.53 -15.71 3.51 -895.22 -3.14 -18.85 16 6 C 0.04 1.62 3.81 86.31 0.33 1.95 16 7 C 0.07 2.81 7.01 72.01 0.50 3.31 16 8 O -0.41 -14.66 10.83 -148.98 -1.61 -16.27 16 9 C 0.06 1.43 7.01 72.02 0.50 1.93 16 10 C 0.02 0.45 5.62 86.31 0.48 0.93 16 11 C 0.51 17.78 5.02 87.66 0.44 18.22 16 12 O -0.58 -25.81 11.65 -3.04 -0.04 -25.84 16 13 N -0.58 -19.05 2.46 -832.18 -2.04 -21.09 16 14 C 0.10 2.28 4.14 84.22 0.35 2.63 16 15 C -0.17 -4.72 4.80 29.04 0.14 -4.59 16 16 C 0.15 5.74 5.63 87.21 0.49 6.23 16 17 N -0.60 -28.86 2.53 -699.01 -1.77 -30.63 16 18 C -0.24 -13.39 9.25 84.03 0.78 -12.61 16 19 H 0.06 3.21 7.85 -2.91 -0.02 3.19 16 20 C -0.04 -2.54 5.04 84.86 0.43 -2.11 16 21 N -0.94 -57.41 10.88 21.65 0.24 -57.18 16 22 Si 0.94 47.33 29.56 68.60 2.03 49.36 16 23 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 25 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 26 C 0.18 9.12 5.14 86.40 0.44 9.56 16 27 C 0.10 3.99 5.18 87.39 0.45 4.45 16 28 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 29 H 0.08 1.18 5.24 -2.39 -0.01 1.17 16 30 H 0.06 0.98 8.07 -2.39 -0.02 0.96 16 31 H 0.03 1.00 6.83 -2.39 -0.02 0.98 16 32 H 0.08 1.74 3.68 -2.39 -0.01 1.73 16 33 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.11 2.01 7.77 -2.39 -0.02 2.00 16 35 H 0.02 0.73 7.23 -2.39 -0.02 0.71 16 36 H 0.01 0.62 7.83 -2.39 -0.02 0.60 16 37 H 0.09 4.05 4.31 -2.39 -0.01 4.04 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.12 1.94 8.04 -2.39 -0.02 1.92 16 43 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.09 1.69 8.06 -2.39 -0.02 1.67 16 45 H 0.13 2.22 2.59 -2.39 -0.01 2.21 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 1.84 5.65 -2.39 -0.01 1.83 16 48 H 0.05 1.59 7.58 -2.39 -0.02 1.57 16 49 H 0.03 1.36 8.02 -2.39 -0.02 1.34 16 50 H 0.24 14.84 8.31 -92.70 -0.77 14.07 16 51 H 0.01 0.46 7.95 -2.39 -0.02 0.44 16 52 H 0.02 1.45 6.66 -2.39 -0.02 1.43 16 53 H 0.05 2.19 7.43 -2.39 -0.02 2.17 16 54 H 0.08 2.67 7.73 -2.38 -0.02 2.65 16 Total: -1.00 -75.16 381.12 1.24 -73.92 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.88 Total: 20.50 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 6.70 Total: 26.08 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -6.72 Total: -127.75 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.65 Total: -42.11 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -75.16 1.24 -73.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981447310.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.503 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds