Wall clock time and date at job start Tue Mar 31 2020 23:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47625 * 2 1 4 4 C 1.52993 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47345 * 180.02562 * 4 3 2 6 6 C 1.47015 * 110.99932 * 288.08077 * 5 4 3 7 7 C 1.53099 * 109.25810 * 177.60154 * 6 5 4 8 8 O 1.43016 * 109.25645 * 56.85076 * 7 6 5 9 9 C 1.43024 * 113.77431 * 301.35162 * 8 7 6 10 10 C 1.47009 * 111.00261 * 164.44033 * 5 4 3 11 11 H 1.08998 * 109.50766 * 62.41751 * 10 5 4 12 12 C 1.50701 * 109.51092 * 302.32904 * 10 5 4 13 13 O 1.21282 * 119.99456 * 332.94050 * 12 10 5 14 14 N 1.34775 * 120.00089 * 152.93966 * 12 10 5 15 15 C 1.46494 * 119.99964 * 180.02562 * 14 12 10 16 16 H 1.09002 * 109.49915 * 325.06497 * 15 14 12 17 17 C 1.53039 * 109.49816 * 205.00206 * 15 14 12 18 18 C 1.53045 * 109.53933 * 178.65210 * 17 15 14 19 19 C 1.53194 * 109.31210 * 61.36364 * 18 17 15 20 20 N 1.46926 * 108.77389 * 305.36633 * 19 18 17 21 21 C 1.36941 * 120.62562 * 233.58620 * 20 19 18 22 22 H 1.08006 * 119.99591 * 149.12052 * 21 20 19 23 23 C 1.38806 * 120.00297 * 329.11236 * 21 20 19 24 24 N 1.31617 * 119.99949 * 334.99812 * 23 21 20 25 25 Si 1.86809 * 119.99879 * 154.99336 * 23 21 20 26 26 H 1.48494 * 109.46767 * 90.00483 * 25 23 21 27 27 H 1.48497 * 109.46923 * 210.00565 * 25 23 21 28 28 H 1.48496 * 109.46740 * 330.00207 * 25 23 21 29 29 C 1.46923 * 118.74138 * 53.85995 * 20 19 18 30 30 H 1.09000 * 109.47984 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47073 * 300.00488 * 1 2 3 32 32 H 1.08998 * 109.47015 * 59.99473 * 1 2 3 33 33 H 1.09006 * 109.46554 * 239.99548 * 2 1 3 34 34 H 1.08998 * 109.47015 * 120.00526 * 2 1 3 35 35 H 1.08994 * 109.46847 * 59.99968 * 3 2 1 36 36 H 1.08999 * 109.46466 * 300.00104 * 3 2 1 37 37 H 1.09004 * 109.47582 * 59.99547 * 4 3 2 38 38 H 1.09004 * 109.47460 * 300.00009 * 4 3 2 39 39 H 1.08996 * 109.50478 * 297.54161 * 6 5 4 40 40 H 1.08998 * 109.50498 * 57.62265 * 6 5 4 41 41 H 1.08996 * 109.50318 * 176.77760 * 7 6 5 42 42 H 1.08998 * 109.50852 * 296.91556 * 7 6 5 43 43 H 1.08995 * 109.47251 * 298.69009 * 9 8 7 44 44 H 1.09001 * 109.54850 * 178.55963 * 9 8 7 45 45 H 0.97000 * 119.99870 * 0.02562 * 14 12 10 46 46 H 1.08996 * 109.46101 * 58.63091 * 17 15 14 47 47 H 1.08996 * 109.44933 * 298.66477 * 17 15 14 48 48 H 1.09004 * 109.49327 * 301.41234 * 18 17 15 49 49 H 1.08994 * 109.52110 * 181.33308 * 18 17 15 50 50 H 1.09003 * 109.58442 * 185.58002 * 19 18 17 51 51 H 1.08998 * 109.70488 * 65.22357 * 19 18 17 52 52 H 0.96996 * 120.00360 * 354.34126 * 24 23 21 53 53 H 1.09002 * 109.58158 * 65.92547 * 29 20 19 54 54 H 1.08999 * 109.58924 * 186.34737 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0599 2.8272 0.0000 6 6 3.8334 3.4667 -1.3043 7 6 4.3026 4.9227 -1.2410 8 8 5.6784 4.9584 -0.8521 9 6 5.9359 4.3444 0.4137 10 6 5.4822 2.8829 0.3675 11 1 6.0710 2.3422 -0.3734 12 6 5.6769 2.2525 1.7225 13 8 4.7677 2.2473 2.5251 14 7 6.8614 1.6946 2.0422 15 6 7.0505 1.0813 3.3591 16 1 6.4907 1.6440 4.1063 17 6 8.5378 1.0932 3.7193 18 6 8.7327 0.4832 5.1093 19 6 8.2498 -0.9706 5.0969 20 7 6.8632 -1.0041 4.6122 21 6 5.8830 -1.6193 5.3443 22 1 4.8667 -1.2564 5.2985 23 6 6.1953 -2.7092 6.1451 24 7 7.2422 -3.4551 5.8622 25 14 5.1299 -3.1172 7.6243 26 1 4.0463 -4.0453 7.2129 27 1 5.9627 -3.7616 8.6714 28 1 4.5341 -1.8688 8.1645 29 6 6.5495 -0.3705 3.3243 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9562 0.8899 36 1 1.6767 1.9562 -0.8900 37 1 3.9330 0.9285 -0.8908 38 1 3.9338 0.9283 0.8891 39 1 4.3959 2.9360 -2.0724 40 1 2.7708 3.4362 -1.5450 41 1 4.1896 5.3843 -2.2219 42 1 3.7037 5.4667 -0.5107 43 1 5.3851 4.8720 1.1922 44 1 7.0035 4.3874 0.6295 45 1 7.5886 1.6991 1.4004 46 1 8.9034 2.1200 3.7189 47 1 9.0936 0.5096 2.9855 48 1 8.1571 1.0516 5.8400 49 1 9.7893 0.5134 5.3754 50 1 8.2939 -1.3789 6.1066 51 1 8.8826 -1.5624 4.4355 52 1 7.7472 -3.2941 5.0499 53 1 7.0469 -0.9123 2.5198 54 1 5.4715 -0.3829 3.1639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008051217.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:48 Heat of formation + Delta-G solvation = -91.155211 kcal Electronic energy + Delta-G solvation = -31614.627146 eV Core-core repulsion = 27585.430763 eV Total energy + Delta-G solvation = -4029.196383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.73614 -40.16855 -38.98242 -37.59062 -36.13787 -35.27055 -34.32036 -32.67657 -32.29254 -30.75180 -30.13089 -27.47267 -27.10253 -25.99645 -24.09163 -23.75817 -23.69203 -22.17022 -21.83434 -21.40312 -20.74455 -19.41565 -18.48600 -17.74882 -17.48137 -16.95770 -16.60932 -16.27977 -16.23974 -16.06719 -15.73185 -15.58568 -15.48917 -15.39364 -15.15323 -14.86597 -14.57189 -14.39530 -14.16854 -13.92715 -13.84031 -13.62884 -13.40166 -13.07167 -12.97587 -12.64584 -12.52579 -12.46451 -12.27317 -12.05941 -11.96365 -11.96016 -11.90433 -11.85967 -11.74527 -11.67268 -11.41670 -11.27097 -11.02207 -10.68130 -10.58000 -10.16774 -9.48119 -8.96532 -8.30386 -5.50166 1.46708 1.53669 1.61227 1.80403 1.91094 2.55678 2.60435 2.87185 3.15289 3.47810 3.62528 3.66765 3.78031 3.85052 3.86467 3.90892 3.99437 4.04952 4.09343 4.16830 4.24151 4.25049 4.31241 4.34094 4.39646 4.49376 4.60074 4.62858 4.64630 4.66247 4.70787 4.75728 4.86169 4.87892 4.90985 4.93758 4.98683 5.01160 5.02284 5.12902 5.19079 5.21788 5.31891 5.34887 5.38011 5.49799 5.72856 5.80039 5.89233 6.01006 6.34725 6.52267 7.00764 7.21674 7.71015 8.13616 8.92080 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003396 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.756261 B = 8242.110116 C =10403.148176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.100 4.100 4 C 0.057 3.943 5 N -0.532 5.532 6 C 0.019 3.981 7 C 0.058 3.942 8 O -0.386 6.386 9 C 0.083 3.917 10 C 0.040 3.960 11 H 0.085 0.915 12 C 0.515 3.485 13 O -0.560 6.560 14 N -0.708 5.708 15 C 0.145 3.855 16 H 0.055 0.945 17 C -0.104 4.104 18 C -0.125 4.125 19 C 0.152 3.848 20 N -0.614 5.614 21 C -0.363 4.363 22 H 0.032 0.968 23 C -0.064 4.064 24 N -0.933 5.933 25 Si 1.113 2.887 26 H -0.282 1.282 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.149 3.851 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.125 0.875 45 H 0.415 0.585 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.091 0.909 50 H 0.042 0.958 51 H 0.013 0.987 52 H 0.255 0.745 53 H 0.019 0.981 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 16.470 -18.308 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.071 4.071 5 N -0.258 5.258 6 C -0.108 4.108 7 C -0.019 4.019 8 O -0.304 6.304 9 C 0.005 3.995 10 C -0.072 4.072 11 H 0.103 0.897 12 C 0.301 3.699 13 O -0.437 6.437 14 N -0.361 5.361 15 C 0.038 3.962 16 H 0.073 0.927 17 C -0.142 4.142 18 C -0.164 4.164 19 C 0.027 3.973 20 N -0.339 5.339 21 C -0.493 4.493 22 H 0.050 0.950 23 C -0.262 4.262 24 N -0.573 5.573 25 Si 0.937 3.063 26 H -0.209 1.209 27 H -0.206 1.206 28 H -0.207 1.207 29 C 0.022 3.978 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.252 0.748 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.109 0.891 50 H 0.060 0.940 51 H 0.031 0.969 52 H 0.065 0.935 53 H 0.037 0.963 54 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.365 15.816 -16.190 22.882 hybrid contribution 0.447 -0.233 -1.657 1.732 sum -2.918 15.583 -17.846 23.871 Atomic orbital electron populations 1.21720 0.94455 1.02038 1.02182 1.21492 0.97129 0.96385 1.01369 1.21437 0.93089 0.96813 1.02399 1.22146 0.97156 0.87915 0.99880 1.61953 1.14625 1.18471 1.30782 1.22983 1.03562 0.95882 0.88385 1.22920 0.81648 0.94848 1.02436 1.87999 1.27271 1.78534 1.36575 1.22531 1.02575 0.87955 0.86391 1.22289 0.91689 0.99661 0.93549 0.89699 1.20722 0.82151 0.77839 0.89217 1.90747 1.42232 1.58638 1.52065 1.45946 1.14772 1.58076 1.17306 1.21283 0.97903 0.92903 0.84097 0.92658 1.21618 0.92843 1.02440 0.97281 1.21929 1.01469 0.96003 0.97034 1.20923 0.84047 0.94952 0.97346 1.44255 1.05728 1.64773 1.19125 1.20080 0.91252 1.11398 1.26538 0.94985 1.27189 1.01609 0.91458 1.05912 1.70872 1.22042 1.37121 1.27292 0.82913 0.74068 0.75876 0.73490 1.20864 1.20605 1.20717 1.21266 0.96822 0.92282 0.87388 0.92373 0.93333 0.91187 0.91185 0.94430 0.93093 0.89956 0.93730 0.93689 0.93055 0.87585 0.85353 0.92396 0.92891 0.85680 0.74761 0.88857 0.90355 0.93257 0.89105 0.93985 0.96859 0.93478 0.96298 0.95930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.13 -2.81 5.93 30.59 0.18 -2.63 16 3 C -0.10 -2.25 5.26 30.59 0.16 -2.09 16 4 C 0.06 1.43 4.63 86.30 0.40 1.83 16 5 N -0.53 -12.33 4.23 -874.41 -3.70 -16.02 16 6 C 0.02 0.30 5.47 86.31 0.47 0.77 16 7 C 0.06 0.84 7.01 72.02 0.50 1.34 16 8 O -0.39 -7.07 10.82 -148.98 -1.61 -8.68 16 9 C 0.08 1.58 6.28 72.02 0.45 2.03 16 10 C 0.04 0.90 2.38 44.18 0.10 1.00 16 11 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 12 C 0.52 15.41 5.75 87.66 0.50 15.92 16 13 O -0.56 -22.89 15.18 -3.04 -0.05 -22.93 16 14 N -0.71 -18.83 5.08 -441.49 -2.24 -21.07 16 15 C 0.14 5.06 2.62 45.22 0.12 5.18 16 16 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 17 C -0.10 -2.93 5.35 30.62 0.16 -2.77 16 18 C -0.12 -4.33 6.08 30.67 0.19 -4.14 16 19 C 0.15 7.11 4.75 86.36 0.41 7.52 16 20 N -0.61 -32.27 2.80 -698.26 -1.95 -34.23 16 21 C -0.36 -21.73 9.45 84.03 0.79 -20.94 16 22 H 0.03 2.02 7.95 -2.91 -0.02 2.00 16 23 C -0.06 -3.78 4.66 84.86 0.40 -3.39 16 24 N -0.93 -57.47 12.55 21.65 0.27 -57.20 16 25 Si 1.11 53.05 29.99 68.60 2.06 55.11 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 C 0.15 6.73 6.12 86.51 0.53 7.26 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.43 6.72 -2.39 -0.02 1.41 16 37 H 0.04 0.99 8.05 -2.38 -0.02 0.97 16 38 H 0.04 1.51 5.93 -2.38 -0.01 1.49 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 1.37 6.62 -2.39 -0.02 1.36 16 41 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.42 7.61 8.60 -92.71 -0.80 6.81 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 50 H 0.04 2.23 6.54 -2.39 -0.02 2.21 16 51 H 0.01 0.63 7.87 -2.39 -0.02 0.61 16 52 H 0.26 15.96 6.86 -92.71 -0.64 15.32 16 53 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.02 1.14 7.93 -2.39 -0.02 1.12 16 Total: -1.00 -77.18 412.68 -0.94 -78.12 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.20 Total: 22.05 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 6.09 Total: 4.86 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -7.62 Total: -128.52 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.66 Total: -31.61 kcal Atomic # 14 Polarization: 53.05 SS G_CDS: 2.06 Total: 55.11 kcal Total: -77.18 -0.94 -78.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008051217.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.037 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds